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[[Category:Software]]
'''rareMETAL''' is a program that facilitates the meta-analysis of rare variants from genotype arrays or sequencing (manuscript in preparation). It was first developed by Shuang Feng, Dajiang Liu and Gonçalo Abecasis. Currently, rareMETAL is being used for the analyses in Exomechip lipids consortium and EMADS [http://genome.sph.umich.edu/wiki/EMADS].
== Useful Wiki Pages ==
There are a few pages in this Wiki that may be useful to METAL users. Here are links to a few:
* The [[METAL FAQ]]
* The [[METAL Command Reference]]
* The [[METAL Documentation]]
* The [[METAL Quick Start|METAL Quick Start Page]] '''Recommended for New Users!!'''
== Option Specific Pages ==
Details of several options are available. Among those:
* [[METAL ADDFILTER|ADDFILTER]]
* [[METAL COLUMNCOUNTING|COLUMNCOUNTING]]
* [[METAL CUSTOMVARIABLE|CUSTOMVARIABLE]]
* [[METAL EFFECTLABEL|EFFECTLABEL]]
* [[METAL GENOMICCONTROL|GENOMICCONTROL]]
* [[METAL LOGPVALUE|LOGPVALUE]]
* [[METAL SOURCE|SOURCE]]
* [[METAL VERBOSE|VERBOSE]]
== Download ==
To download Metal, go to [http://www.sph.umich.edu/csg/abecasis/Metal/ the METAL website].
== Related Programs ==
[[LocusZoom]] is a program that facilitates display of genomewide association scan results.
'''rareMETAL''' is a program that facilitates the meta-analysis of rare variants from genotype arrays or sequencing (manuscript in preparation). It was first developed by Shuang Feng, Dajiang Liu and Gonçalo Abecasis. Currently, rareMETAL is being used for the analyses in Exomechip lipids consortium and EMADS [http://genome.sph.umich.edu/wiki/EMADS].
== Useful Wiki Pages ==
There are a few pages in this Wiki that may be useful to METAL users. Here are links to a few:
* The [[METAL FAQ]]
* The [[METAL Command Reference]]
* The [[METAL Documentation]]
* The [[METAL Quick Start|METAL Quick Start Page]] '''Recommended for New Users!!'''
== Option Specific Pages ==
Details of several options are available. Among those:
* [[METAL ADDFILTER|ADDFILTER]]
* [[METAL COLUMNCOUNTING|COLUMNCOUNTING]]
* [[METAL CUSTOMVARIABLE|CUSTOMVARIABLE]]
* [[METAL EFFECTLABEL|EFFECTLABEL]]
* [[METAL GENOMICCONTROL|GENOMICCONTROL]]
* [[METAL LOGPVALUE|LOGPVALUE]]
* [[METAL SOURCE|SOURCE]]
* [[METAL VERBOSE|VERBOSE]]
== Download ==
To download Metal, go to [http://www.sph.umich.edu/csg/abecasis/Metal/ the METAL website].
== Related Programs ==
[[LocusZoom]] is a program that facilitates display of genomewide association scan results.
