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GotCloud has been developed and tested on Linux Ubuntu 12.10 and 12.04.2 LTS. While it should work on other Linux systems, they have not yet been tested.
GotCloud has been developed and tested on Linux Ubuntu 12.10 and 12.04.2 LTS. While it should work on other Linux systems, they have not yet been tested.
== GotCloud Dependencies ==
GotCloud requires certain things to be installed in order to run:
* perl - gotcloud is a perl script and it calls many other perl scripts
** Zlib.pm - required for perl scripts to read compressed files.
* make - GNU make is used to run the pipelines
* java - required to run the beagle step of the ld-aware genotype refinement
== Install GotCloud Software ==
== Install GotCloud Software ==
