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35 bytes added
, 15:37, 10 September 2013
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| For example, you can modify from the following command | | For example, you can modify from the following command |
− | /net/fantasia/home/hmkang/bin/captTest/bin/capt-pileup --index /net/1000g/hmkang/1KG/phase3/index/20130502.gotcloud.low_coverage.2col.index --out /net/1000g/hmkang/1KG/phase3/wg.consensus/lcmpus/phase3.low_coverage.wgs --loci /net/1000g/hmkang/1KG/phase3/wg.consensus/union/union.snps.sites.loci --mosix-nodes 10,11,12,13 --ref /net/1000g/hmkang/1KG/phase3/gotcloud/gotcloud.ref/hs37d5.fa --clip-overlap | + | /net/fantasia/home/hmkang/bin/captTest/bin/capt-pileup --index /net/1000g/hmkang/1KG/phase3/index/20130502.gotcloud.low_coverage.2col.index \\ |
| + | --out /net/1000g/hmkang/1KG/phase3/wg.consensus/lcmpus/phase3.low_coverage.wgs \\ |
| + | --loci /net/1000g/hmkang/1KG/phase3/wg.consensus/union/union.snps.sites.loci \\ |
| + | --mosix-nodes 10,11,12,13 \\ |
| + | --ref /net/1000g/hmkang/1KG/phase3/gotcloud/gotcloud.ref/hs37d5.fa \\ |
| + | --clip-overlap |
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| Have a peek of the each input file to better understand what you actually need to prepare | | Have a peek of the each input file to better understand what you actually need to prepare |