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499 bytes added
, 07:36, 25 March 2011
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| FLIP | | FLIP |
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− | Additional details on the [[METAL COLUMNCOUNTING|COLUMNCOUNTING]] option are available. | + | Additional details on the [[METAL COLUMNCOUNTING|COLUMNCOUNTING]] and [[METAL EFFECTLABEL|EFFECTLABEL]] options are available. |
| | | |
| === Filtering Input Files === | | === Filtering Input Files === |
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| (available conditions are <, >, <=, >=, =, !=, IN) | | (available conditions are <, >, <=, >=, =, !=, IN) |
| REMOVEFILTERS | | REMOVEFILTERS |
| + | |
| + | Additional details on these options are [[METAL ADDFILTER|available]]. |
| | | |
| === Sample Size Weighted Meta-analysis === | | === Sample Size Weighted Meta-analysis === |
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| CUSTOMVARIABLE [VARNAME] | | CUSTOMVARIABLE [VARNAME] |
| LABEL [VARNAME] AS [HEADER] | | LABEL [VARNAME] AS [HEADER] |
| + | |
| + | Additional details on these options are [[METAL CUSTOMVARIABLE|available]]. |
| | | |
| === Explicit Strand Information === | | === Explicit Strand Information === |
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| === Genomic Control Correction of Input Statistics === | | === Genomic Control Correction of Input Statistics === |
− | GENOMICCONTROL [ON|OFF|VALUE] (default = OFF) | + | GENOMICCONTROL [ON|OFF|VALUE|LIST snps.txt](default = OFF) |
| + | |
| + | Additional details on this option are [[METAL GENOMICCONTROL|available]]. |
| | | |
| === General Analysis Control === | | === General Analysis Control === |
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| ANALYZE [HETEROGENEITY] | | ANALYZE [HETEROGENEITY] |
| CLEAR | | CLEAR |
| + | |
| + | Additional details on the [[METAL LOGPVALUE|LogPValue]] and [[METAL VERBOSE|Verbose]] commands are available. |
| + | |
| + | === Script Control === |
| + | |
| + | SOURCE [FILENAME] |
| + | |
| + | Additional details on this command are [[METAL SOURCE|available]]. |