From Genome Analysis Wiki
Jump to navigationJump to search
410 bytes added
, 16:46, 3 December 2013
Line 117: |
Line 117: |
| | | |
| *Note: SNPs that cannot be converted from rsID to chr:pos format are listed in the output file rsid.index.snp.txt. SNPs for which there are no LD proxies or no MAF data available are listed in the output file nonannoted.index.snp.txt. | | *Note: SNPs that cannot be converted from rsID to chr:pos format are listed in the output file rsid.index.snp.txt. SNPs for which there are no LD proxies or no MAF data available are listed in the output file nonannoted.index.snp.txt. |
| + | |
| + | == Testing FallInBed == |
| + | There is an example directory in ~/FallInBed. You can find index SNP file, 3 bed files, bed file index and example config file. |
| + | After change your config file, you can run a test. |
| + | |
| + | perl ~/FallInBed/script/FallInBed.pl --conf ~/FallInBed/example/example.conf |
| + | |
| + | After running 2 minutes +/- 1 minutes. You will get result file "StatisticSummaryFile.txt" in your defined output directory. |
| | | |
| == Acknowledgements == | | == Acknowledgements == |
| FallInBed is the result of collaborative efforts by Cristen Willer, Jin Chen, Wei Zhou, Ellen Schmidt, He Zhang, and Goncalo Abecasis. Please email Cristen Willer [cristen@umich.edu] for any questions. | | FallInBed is the result of collaborative efforts by Cristen Willer, Jin Chen, Wei Zhou, Ellen Schmidt, He Zhang, and Goncalo Abecasis. Please email Cristen Willer [cristen@umich.edu] for any questions. |