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should work well.
 
should work well.
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= Alternatives =
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Note that Cristen Willer and Serena Sanna have also made many beautiful plots for GWAS data using R base graphics. They have provided a sample script that does many of the same things as the above function, plus takes care of reading in the data, highlighting known SNPs, and making QQ plots. The sample code can be found at
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    snowwhite:/home/cristen/scripts/makeplot_manhattan_qq_forsharing.R
      
[[Category:Code Samples]]
 
[[Category:Code Samples]]

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