From Genome Analysis Wiki
Jump to navigationJump to search
38 bytes added
, 12:32, 22 January 2014
Line 11: |
Line 11: |
| **An example is at /net/wonderland/home/yancylo/bin/umake-glfSingle/umake-glfSingle.conf | | **An example is at /net/wonderland/home/yancylo/bin/umake-glfSingle/umake-glfSingle.conf |
| **Note that the glfSingle and merging steps are included by enabling these two steps: | | **Note that the glfSingle and merging steps are included by enabling these two steps: |
− | RUN_PILEUP = TRUE # create GLF file from BAM then individual VCF using glfSingle | + | RUN_PILEUP = TRUE # create GLF file from BAM then individual VCF using glfSingle (sorry, you have to redo the pileups) |
| RUN_GLFMULTIPLES = TRUE # create unfiltered SNP calls, population VCF by merging the glfSingle outputs | | RUN_GLFMULTIPLES = TRUE # create unfiltered SNP calls, population VCF by merging the glfSingle outputs |
| | | |