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, 23:06, 25 March 2014
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| * --LDwindow specifies the length of the window that LD Matrix should be generated upon each variant. The default is 1MB. | | * --LDwindow specifies the length of the window that LD Matrix should be generated upon each variant. The default is 1MB. |
| * --zip gives users the option of writing compressed files (bgzip compressed) automatically for convenient sharing. | | * --zip gives users the option of writing compressed files (bgzip compressed) automatically for convenient sharing. |
− | * --thin tells RAREMETALWORKER to thin points when generating QQ plot and Manhattan plots, so the file size is smaller. | + | * --thin tells RMW to thin points when generating QQ plot and Manhattan plots, so the file size is smaller. |
− | * --labelHits tells RAREMETALWORKER to to label the hits using pvalue threshold 0.05/(#of variants tested) with gene name, based on human genome build 19. | + | * --labelHits tells RMW to to label the hits using pvalue threshold 0.05/(#of variants tested) with gene name, based on human genome build 19. |
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| ==== VC Options ==== | | ==== VC Options ==== |