SeqShop: May 2015: Difference between revisions

Revision as of 09:48, 20 May 2015

Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/

Monday	Lecture	Practical	Own Genome Analysis
	Brief Introduction and Background	SeqShop: Quick intro to Linux	SeqShop: Aligning Your Own Genome
	Design of Human Genetic Studies	SeqShop: Sequence Mapping and Assembly Practical
	Sequence Mapping and Assembly	iobio: Visualizing BAM statistics
Tuesday	Lecture	Practical	Own Genome Analysis
	Variant Calling and Filtering for SNPs	SeqShop: Variant Calling and Filtering for SNPs Practical	SeqShop: Calling Your Own Genome
	Analysis of Structural Variation - Part 1 Analysis of Structural Variation - Part 2	SeqShop: Analysis of Structural Variation Practical	SeqShop: Calling Your Own Genome
Wednesday	Lecture	Practical	Own Genome Analysis
	Variant Calling and Filtering for INDELs More Lessons on Indels + De-novo Assembly Methods	SeqShop: Variant Calling and Filtering for INDELs Practical	SeqShop: Calling Your Own Genome
Thursday	Lecture	Practical	Own Genome Analysis
	Estimates of Genetic Ancestry	SeqShop: Estimates of Genetic Ancestry Practical
	Genetic Association Analysis	SeqShop: Association Analysis
Friday	Lecture	Practical	Own Genome Analysis
	Summary		SeqShop: Ancestry On Your Own Genome

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-| [[Media:Variant Calling and Filtering for INDELs.pdf|Variant Calling and Filtering for INDELs]]
+| [[Media:Seqshop 2015 non-SNP variation.pdf|Variant Calling and Filtering for INDELs]]
 [[Media:seqshop_2015_day3_indel_assembly.pdf|More Lessons on Indels + De-novo Assembly Methods]]