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Jump to navigationJump to search- 21:21, 7 December 2014 diff hist +106 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Goals of This Session
- 21:19, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud snpcall.pdf"
- 20:30, 7 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Running GotCloud Genotype Refinement
- 20:24, 7 December 2014 diff hist 0 File:Vcfsout.png Mktrost uploaded a new version of "File:Vcfsout.png" current
- 20:04, 7 December 2014 diff hist -177 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 20:00, 7 December 2014 diff hist 0 File:SnpcallStartNew.png Mktrost uploaded a new version of "File:SnpcallStartNew.png" current
- 19:58, 7 December 2014 diff hist -1 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 19:58, 7 December 2014 diff hist -1 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 19:54, 7 December 2014 diff hist +108 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 19:52, 7 December 2014 diff hist 0 File:BamList2.png Mktrost uploaded a new version of "File:BamList2.png" current
- 19:46, 7 December 2014 diff hist +52 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM List File
- 19:43, 7 December 2014 diff hist +19 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM List File
- 19:43, 7 December 2014 diff hist 0 File:BamindexNew.png Mktrost uploaded a new version of "File:BamindexNew.png" current
- 19:42, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud snpcall.pdf"
- 19:21, 7 December 2014 diff hist +60 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Introduction
- 19:20, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - GotCloud snpcall.pdf
- 18:26, 7 December 2014 diff hist +41 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Logging Off
- 18:02, 7 December 2014 diff hist +124 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 17:59, 7 December 2014 diff hist 0 File:GcalignStartNew.png Mktrost uploaded a new version of "File:GcalignStartNew.png" current
- 17:53, 7 December 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 17:39, 7 December 2014 diff hist +539 Template:SeqShopLogin
- 17:33, 7 December 2014 diff hist +83 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup your run environment
- 17:26, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud Align.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud Align.pdf" current
- 16:17, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - Linux.pdf"
- 15:24, 7 December 2014 diff hist +158 SeqShop: Aligning Your Own Genome, December 2014
- 15:22, 7 December 2014 diff hist 0 N File:Sequence Analysis Workshop-Risks viewing genetic information Dec2014.pdf current
- 14:02, 7 December 2014 diff hist +90 SeqShop: December 2014
- 14:01, 7 December 2014 diff hist 0 N File:SeqShopScheduleDec2014.pdf current
- 13:59, 7 December 2014 diff hist +53 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Introduction
- 13:56, 7 December 2014 diff hist -2 SeqShop: December 2014
- 13:55, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - Linux.pdf"
- 13:54, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - Linux.pdf
- 12:01, 7 December 2014 diff hist +53 SeqShop: December 2014
- 00:19, 7 December 2014 diff hist +8 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Introduction
- 00:18, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - GotCloud Align.pdf
- 23:27, 6 December 2014 diff hist +4 SeqShop: Ancestry On Your Own Genome, December 2014 →Setup
- 23:26, 6 December 2014 diff hist -136 SeqShop: Ancestry On Your Own Genome, December 2014 →Setup
- 17:57, 6 December 2014 diff hist +155 SeqShop: Calling Your Own Genome, December 2014
- 17:49, 6 December 2014 diff hist +155 SeqShop: Aligning Your Own Genome, December 2014 →Goals of This Session
- 15:47, 6 December 2014 diff hist -482 SeqShop: Aligning Your Own Genome, December 2014 →I didn't get sequenced, what can I do?
- 15:45, 6 December 2014 diff hist -3 SeqShop: Aligning Your Own Genome, December 2014 →Goals of This Session
- 15:44, 6 December 2014 diff hist +115 SeqShop: Aligning Your Own Genome, December 2014
- 15:26, 6 December 2014 diff hist +700 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:14, 6 December 2014 diff hist +121 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:11, 6 December 2014 diff hist 0 File:IndelRef.png Mktrost uploaded a new version of "File:IndelRef.png": Reverted to version as of 19:10, 6 December 2014 current
- 15:11, 6 December 2014 diff hist +101 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:11, 6 December 2014 diff hist 0 File:IndelRef.png Mktrost uploaded a new version of "File:IndelRef.png"
- 15:10, 6 December 2014 diff hist 0 File:IndelRef.png Mktrost uploaded a new version of "File:IndelRef.png"
- 01:22, 6 December 2014 diff hist +42 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Summary
- 01:16, 6 December 2014 diff hist +2 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Records
- 01:10, 6 December 2014 diff hist +10 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Records
- 01:07, 6 December 2014 diff hist -77 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Header
- 01:03, 6 December 2014 diff hist +166 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Did I find interesting variants?
- 01:00, 6 December 2014 diff hist +6 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Did I find interesting variants?
- 00:59, 6 December 2014 diff hist +152 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud indel Ouptut
- 00:55, 6 December 2014 diff hist 0 File:IndelOut.png Mktrost uploaded a new version of "File:IndelOut.png" current
- 23:50, 5 December 2014 diff hist +38 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Setup your run environment
- 23:50, 5 December 2014 diff hist +19 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup in person at the SeqShop Workshop
- 23:49, 5 December 2014 diff hist 0 File:Setup.png Mktrost uploaded a new version of "File:Setup.png" current
- 23:38, 5 December 2014 diff hist +38 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Setup your run environment
- 13:46, 3 December 2014 diff hist +24 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Improvements
- 11:09, 2 December 2014 diff hist -54 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 18:06, 1 December 2014 diff hist +78 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud indel Ouptut
- 14:48, 1 December 2014 diff hist -22 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Improvements
- 22:44, 26 November 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud Indel Input files
- 22:41, 26 November 2014 diff hist +42 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 11:43, 26 November 2014 diff hist +65 N SeqShop: Ancestry On Your Own Genome Mktrost moved page SeqShop: Ancestry On Your Own Genome to SeqShop: Ancestry On Your Own Genome, December 2014 current
- 11:43, 26 November 2014 diff hist 0 m SeqShop: Ancestry On Your Own Genome, December 2014 Mktrost moved page SeqShop: Ancestry On Your Own Genome to SeqShop: Ancestry On Your Own Genome, December 2014
- 11:43, 26 November 2014 diff hist +61 N SeqShop: Calling Your Own Genome Mktrost moved page SeqShop: Calling Your Own Genome to SeqShop: Calling Your Own Genome, December 2014 current
- 11:43, 26 November 2014 diff hist 0 m SeqShop: Calling Your Own Genome, December 2014 Mktrost moved page SeqShop: Calling Your Own Genome to SeqShop: Calling Your Own Genome, December 2014
- 11:42, 26 November 2014 diff hist 0 SeqShop: December 2014
- 11:42, 26 November 2014 diff hist -25 SeqShop: December 2014
- 11:42, 26 November 2014 diff hist +346 SeqShop: December 2014
- 11:41, 26 November 2014 diff hist +73 N SeqShop: Friday - Practicing what we learned Mktrost moved page SeqShop: Friday - Practicing what we learned to SeqShop: Friday - Practicing what we learned, December 2014 current
- 11:41, 26 November 2014 diff hist +76 N SeqShop: Genetic Association Analysis Practical Mktrost moved page SeqShop: Genetic Association Analysis Practical to SeqShop: Genetic Association Analysis Practical, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Genetic Association Analysis Practical, December 2014 Mktrost moved page SeqShop: Genetic Association Analysis Practical to SeqShop: Genetic Association Analysis Practical, December 2014
- 11:41, 26 November 2014 diff hist +77 N SeqShop: Estimates of Genetic Ancestry Practical Mktrost moved page SeqShop: Estimates of Genetic Ancestry Practical to SeqShop: Estimates of Genetic Ancestry Practical, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Estimates of Genetic Ancestry Practical, December 2014 Mktrost moved page SeqShop: Estimates of Genetic Ancestry Practical to SeqShop: Estimates of Genetic Ancestry Practical, December 2014
- 11:41, 26 November 2014 diff hist +62 N SeqShop: Aligning Your Own Genome Mktrost moved page SeqShop: Aligning Your Own Genome to SeqShop: Aligning Your Own Genome, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Aligning Your Own Genome, December 2014 Mktrost moved page SeqShop: Aligning Your Own Genome to SeqShop: Aligning Your Own Genome, December 2014
- 11:41, 26 November 2014 diff hist +80 N SeqShop: Analysis of Structural Variation Practical Mktrost moved page SeqShop: Analysis of Structural Variation Practical to SeqShop: Analysis of Structural Variation Practical, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Analysis of Structural Variation Practical, December 2014 Mktrost moved page SeqShop: Analysis of Structural Variation Practical to SeqShop: Analysis of Structural Variation Practical, December 2014
- 11:40, 26 November 2014 diff hist +88 N SeqShop: Variant Calling and Filtering for INDELs Practical Mktrost moved page SeqShop: Variant Calling and Filtering for INDELs Practical to SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 11:40, 26 November 2014 diff hist 0 m SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for INDELs Practical to SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 13:30, 24 November 2014 diff hist 0 N File:CampusMap.jpg current
- 23:20, 23 November 2014 diff hist -3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Improvements
- 23:13, 23 November 2014 diff hist -182 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Did I find interesting variants?
- 23:13, 23 November 2014 diff hist 0 N File:SamtoolstviewsnpNew.png current
- 23:06, 23 November 2014 diff hist +28 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Genotype Refinement Output
- 23:04, 23 November 2014 diff hist -6 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Genotype Refinement Output
- 23:02, 23 November 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Running GotCloud Genotype Refinement
- 23:01, 23 November 2014 diff hist +3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Running GotCloud Genotype Refinement
- 23:01, 23 November 2014 diff hist 0 N File:GcldrefineOutNew.png current
- 22:53, 23 November 2014 diff hist -1 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Genotype Refinement Input
- 22:50, 23 November 2014 diff hist +3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Filtered VCF
- 22:49, 23 November 2014 diff hist 0 N File:SvmFiltGLNew.png current
- 22:46, 23 November 2014 diff hist +15 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Examining GotCloud SnpCall Output
- 22:38, 23 November 2014 diff hist 0 N File:SvmFiltNew.png current
- 22:31, 23 November 2014 diff hist +6 Understanding vcf-summary output →Example output from vcf-summary current
- 22:31, 23 November 2014 diff hist +3 Understanding vcf-summary output →Example output from vcf-summary