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Jump to navigationJump to search- 22:21, 10 December 2014 diff hist +1 SeqShop: Ancestry On Your Own Genome, December 2014 →Setup your terminal
- 22:21, 10 December 2014 diff hist +36 SeqShop: Ancestry On Your Own Genome, December 2014
- 22:19, 10 December 2014 diff hist +179 SeqShop: Ancestry On Your Own Genome, December 2014
- 22:17, 10 December 2014 diff hist -283 SeqShop: Ancestry On Your Own Genome, December 2014
- 22:06, 10 December 2014 diff hist -62 SeqShop: Calling Your Own Genome, December 2014
- 22:06, 10 December 2014 diff hist -67 SeqShop: Calling Your Own Genome, December 2014 →Friday
- 21:59, 10 December 2014 diff hist +118 SeqShop: Calling Your Own Genome, December 2014 →Friday
- 21:45, 10 December 2014 diff hist +208 SeqShop: Calling Your Own Genome, December 2014 →Association Analysis Tutorial
- 21:41, 10 December 2014 diff hist +348 SeqShop: Genetic Association Analysis Practical, December 2014 →Setup in person at the SeqShop Workshop
- 21:33, 10 December 2014 diff hist +114 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup your run environment
- 21:29, 10 December 2014 diff hist +3 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup in person at the SeqShop Workshop
- 21:28, 10 December 2014 diff hist -13 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup in person at the SeqShop Workshop
- 21:27, 10 December 2014 diff hist +176 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup in person at the SeqShop Workshop
- 21:23, 10 December 2014 diff hist +13 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 21:17, 10 December 2014 diff hist +2 SeqShop: Calling Your Own Genome, December 2014 →Friday: Reviewing SNPCALL Results
- 21:16, 10 December 2014 diff hist +658 SeqShop: Calling Your Own Genome, December 2014 →Friday: Reviewing Indel Results
- 21:09, 10 December 2014 diff hist +15 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 21:08, 10 December 2014 diff hist +14 SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 21:05, 10 December 2014 diff hist -15 Template:SeqShopRemoteEnv current
- 20:56, 10 December 2014 diff hist +88 SeqShop: December 2014
- 20:53, 10 December 2014 diff hist +193 SeqShop: Ancestry On Your Own Genome, December 2014 →Visualizing Ancestry
- 20:51, 10 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014 →Thursday
- 20:50, 10 December 2014 diff hist +7 SeqShop: Calling Your Own Genome, December 2014 →Checking Completion
- 20:46, 10 December 2014 diff hist -90 SeqShop: Calling Your Own Genome, December 2014 →Thursday
- 20:43, 10 December 2014 diff hist +892 SeqShop: Calling Your Own Genome, December 2014
- 20:23, 10 December 2014 diff hist -2 SeqShop: December 2014
- 20:23, 10 December 2014 diff hist -28 SeqShop: December 2014
- 20:08, 10 December 2014 diff hist +144 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Visualizing results
- 20:07, 10 December 2014 diff hist +24 SeqShop: December 2014
- 20:06, 10 December 2014 diff hist 0 N File:DecWorshop2014-ancestry.pdf current
- 18:01, 10 December 2014 diff hist 0 SeqShop: December 2014
- 12:33, 10 December 2014 diff hist +37 SeqShop: Analysis of Structural Variation Practical, December 2014 →Setup your run environment
- 11:25, 10 December 2014 diff hist +4 SeqShop: Calling Your Own Genome, December 2014 →Looking at final INDEL VCF
- 11:18, 10 December 2014 diff hist +100 SeqShop: Calling Your Own Genome, December 2014
- 10:51, 10 December 2014 diff hist +445 SeqShop: Calling Your Own Genome, December 2014 →Configuring SnpCall
- 10:43, 10 December 2014 diff hist +2 SeqShop: Calling Your Own Genome, December 2014 →Structural Variation Tutorial
- 10:42, 10 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014
- 10:37, 10 December 2014 diff hist +458 SeqShop: Calling Your Own Genome, December 2014 →Checking if INDEL Completed
- 19:34, 9 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014 →Thursday
- 19:34, 9 December 2014 diff hist -49 SeqShop: Calling Your Own Genome, December 2014 →Log Out
- 19:34, 9 December 2014 diff hist -215 SeqShop: Calling Your Own Genome, December 2014 →Resume screen
- 19:33, 9 December 2014 diff hist -341 SeqShop: Calling Your Own Genome, December 2014
- 19:28, 9 December 2014 diff hist +398 SeqShop: Calling Your Own Genome, December 2014
- 19:25, 9 December 2014 diff hist +1,656 SeqShop: Calling Your Own Genome, December 2014
- 19:25, 9 December 2014 diff hist +139 SeqShop: Analysis of Structural Variation Practical, December 2014
- 19:24, 9 December 2014 diff hist +91 SeqShop: December 2014
- 19:23, 9 December 2014 diff hist +7 SeqShop: December 2014
- 19:02, 9 December 2014 diff hist +89 SeqShop: December 2014
- 18:52, 9 December 2014 diff hist +23 SeqShop: December 2014
- 18:52, 9 December 2014 diff hist 0 File:Mapping and assemblyDec2014.pdf Mktrost uploaded a new version of "File:Mapping and assemblyDec2014.pdf" current
- 18:50, 9 December 2014 diff hist 0 N File:Dec2014 Analysis of SV.pdf current
- 13:57, 9 December 2014 diff hist +41 SeqShop: December 2014
- 13:56, 9 December 2014 diff hist 0 File:Variant Calling and Filtering for INDELs.pdf Mktrost uploaded a new version of "File:Variant Calling and Filtering for INDELs.pdf" current
- 11:24, 9 December 2014 diff hist +102 SeqShop: December 2014
- 11:21, 9 December 2014 diff hist +79 SeqShop: Calling Your Own Genome, December 2014 →Setup
- 00:09, 9 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014 →Indel Step 2 (Day 2): Checking Indel
- 00:08, 9 December 2014 diff hist +2,998 SeqShop: Calling Your Own Genome, December 2014 →Indel Step 2 (Day 2): Checking Indel
- 23:23, 8 December 2014 diff hist +208 SeqShop: Calling Your Own Genome, December 2014
- 23:22, 8 December 2014 diff hist +2,515 SeqShop: Calling Your Own Genome, December 2014
- 23:15, 8 December 2014 diff hist -1 SeqShop: Calling Your Own Genome, December 2014 →Configuration Updates
- 23:14, 8 December 2014 diff hist -2 SeqShop: Calling Your Own Genome, December 2014 →Configuration Updates
- 23:08, 8 December 2014 diff hist -1,236 SeqShop: Calling Your Own Genome, December 2014
- 22:55, 8 December 2014 diff hist +8 SeqShop: Calling Your Own Genome, December 2014
- 22:54, 8 December 2014 diff hist -85 SeqShop: Calling Your Own Genome, December 2014 →Running SnpCall
- 22:50, 8 December 2014 diff hist +2 SeqShop: Calling Your Own Genome, December 2014 →Configuring SnpCall
- 22:50, 8 December 2014 diff hist +2 SeqShop: Calling Your Own Genome, December 2014 →List of BAMs
- 22:48, 8 December 2014 diff hist +182 SeqShop: Calling Your Own Genome, December 2014 →Log Out
- 22:11, 8 December 2014 diff hist -1,473 SeqShop: Calling Your Own Genome, December 2014 →Chromosome 20
- 21:46, 8 December 2014 diff hist 0 SeqShop: Genetic Association Analysis Practical, December 2014
- 13:34, 8 December 2014 diff hist +948 SeqShop: Calling Your Own Genome, December 2014
- 12:38, 8 December 2014 diff hist -335 SeqShop: Calling Your Own Genome, December 2014 →Setup
- 12:37, 8 December 2014 diff hist -3 SeqShop: Calling Your Own Genome, December 2014 →Setup
- 11:08, 8 December 2014 diff hist +147 SeqShop: December 2014
- 10:39, 8 December 2014 diff hist 0 File:Mapping and assemblyDec2014.pdf Mktrost uploaded a new version of "File:Mapping and assemblyDec2014.pdf"
- 10:24, 8 December 2014 diff hist 0 SeqShop: December 2014
- 10:23, 8 December 2014 diff hist +294 SeqShop: Aligning Your Own Genome, December 2014 →Recalibration Comparison current
- 10:18, 8 December 2014 diff hist 0 N File:QplotComp.pdf current
- 10:14, 8 December 2014 diff hist +28 SeqShop: December 2014
- 10:13, 8 December 2014 diff hist 0 N File:Mapping and assemblyDec2014.pdf
- 00:53, 8 December 2014 diff hist +27 SeqShop: December 2014
- 00:31, 8 December 2014 diff hist 0 N File:Sequencing symposium 2014.pptx current
- 23:47, 7 December 2014 diff hist +4 SeqShop: December 2014
- 23:47, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - Linux.pdf" current
- 23:08, 7 December 2014 diff hist +799 SeqShop: Aligning Your Own Genome, December 2014 →Quality Control Output
- 22:56, 7 December 2014 diff hist +739 SeqShop: Aligning Your Own Genome, December 2014 →Quality Control Output
- 22:28, 7 December 2014 diff hist +165 SeqShop: Aligning Your Own Genome, December 2014 →Quality Control Output
- 22:27, 7 December 2014 diff hist +476 SeqShop: Aligning Your Own Genome, December 2014 →Alignment Pipeline Output
- 22:15, 7 December 2014 diff hist +85 SeqShop: Aligning Your Own Genome, December 2014 →FEEDBACK!
- 22:10, 7 December 2014 diff hist -1,437 SeqShop: Aligning Your Own Genome, December 2014
- 22:07, 7 December 2014 diff hist +1,634 SeqShop: Calling Your Own Genome, December 2014
- 22:03, 7 December 2014 diff hist +12 SeqShop: Aligning Your Own Genome, December 2014 →Created a GotCloud Configuration File
- 21:54, 7 December 2014 diff hist 0 SeqShop: Aligning Your Own Genome, December 2014 →Create your GotCloud Configuration File
- 21:54, 7 December 2014 diff hist +81 SeqShop: Aligning Your Own Genome, December 2014 →Locating your FASTQs
- 21:52, 7 December 2014 diff hist -6,504 SeqShop: Aligning Your Own Genome, December 2014 →I got sequence, how to I get my data ready to run?
- 21:39, 7 December 2014 diff hist +47 SeqShop: Aligning Your Own Genome, December 2014 →Goals of This Session
- 21:30, 7 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Running GotCloud Indel
- 21:26, 7 December 2014 diff hist -2 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Running GotCloud Indel
- 21:26, 7 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud Indel Input files
- 21:25, 7 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud Indel Input files
- 21:22, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - GotCloud indel.pdf current
- 21:21, 7 December 2014 diff hist +106 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Goals of This Session
- 21:19, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud snpcall.pdf"
- 20:30, 7 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Running GotCloud Genotype Refinement
- 20:24, 7 December 2014 diff hist 0 File:Vcfsout.png Mktrost uploaded a new version of "File:Vcfsout.png" current
- 20:04, 7 December 2014 diff hist -177 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 20:00, 7 December 2014 diff hist 0 File:SnpcallStartNew.png Mktrost uploaded a new version of "File:SnpcallStartNew.png" current
- 19:58, 7 December 2014 diff hist -1 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 19:58, 7 December 2014 diff hist -1 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 19:54, 7 December 2014 diff hist +108 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 19:52, 7 December 2014 diff hist 0 File:BamList2.png Mktrost uploaded a new version of "File:BamList2.png" current
- 19:46, 7 December 2014 diff hist +52 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM List File
- 19:43, 7 December 2014 diff hist +19 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM List File
- 19:43, 7 December 2014 diff hist 0 File:BamindexNew.png Mktrost uploaded a new version of "File:BamindexNew.png" current
- 19:42, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud snpcall.pdf"
- 19:21, 7 December 2014 diff hist +60 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Introduction
- 19:20, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - GotCloud snpcall.pdf
- 18:26, 7 December 2014 diff hist +41 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Logging Off
- 18:02, 7 December 2014 diff hist +124 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 17:59, 7 December 2014 diff hist 0 File:GcalignStartNew.png Mktrost uploaded a new version of "File:GcalignStartNew.png" current
- 17:53, 7 December 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 17:39, 7 December 2014 diff hist +539 Template:SeqShopLogin
- 17:33, 7 December 2014 diff hist +83 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup your run environment
- 17:26, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud Align.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud Align.pdf" current
- 16:17, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - Linux.pdf"
- 15:24, 7 December 2014 diff hist +158 SeqShop: Aligning Your Own Genome, December 2014
- 15:22, 7 December 2014 diff hist 0 N File:Sequence Analysis Workshop-Risks viewing genetic information Dec2014.pdf current
- 14:02, 7 December 2014 diff hist +90 SeqShop: December 2014
- 14:01, 7 December 2014 diff hist 0 N File:SeqShopScheduleDec2014.pdf current
- 13:59, 7 December 2014 diff hist +53 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Introduction
- 13:56, 7 December 2014 diff hist -2 SeqShop: December 2014
- 13:55, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - Linux.pdf"
- 13:54, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - Linux.pdf
- 12:01, 7 December 2014 diff hist +53 SeqShop: December 2014
- 00:19, 7 December 2014 diff hist +8 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Introduction
- 00:18, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - GotCloud Align.pdf
- 23:27, 6 December 2014 diff hist +4 SeqShop: Ancestry On Your Own Genome, December 2014 →Setup
- 23:26, 6 December 2014 diff hist -136 SeqShop: Ancestry On Your Own Genome, December 2014 →Setup
- 17:57, 6 December 2014 diff hist +155 SeqShop: Calling Your Own Genome, December 2014
- 17:49, 6 December 2014 diff hist +155 SeqShop: Aligning Your Own Genome, December 2014 →Goals of This Session
- 15:47, 6 December 2014 diff hist -482 SeqShop: Aligning Your Own Genome, December 2014 →I didn't get sequenced, what can I do?
- 15:45, 6 December 2014 diff hist -3 SeqShop: Aligning Your Own Genome, December 2014 →Goals of This Session
- 15:44, 6 December 2014 diff hist +115 SeqShop: Aligning Your Own Genome, December 2014
- 15:26, 6 December 2014 diff hist +700 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:14, 6 December 2014 diff hist +121 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:11, 6 December 2014 diff hist 0 File:IndelRef.png Mktrost uploaded a new version of "File:IndelRef.png": Reverted to version as of 19:10, 6 December 2014 current
- 15:11, 6 December 2014 diff hist +101 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:11, 6 December 2014 diff hist 0 File:IndelRef.png Mktrost uploaded a new version of "File:IndelRef.png"
- 15:10, 6 December 2014 diff hist 0 File:IndelRef.png Mktrost uploaded a new version of "File:IndelRef.png"
- 01:22, 6 December 2014 diff hist +42 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Summary
- 01:16, 6 December 2014 diff hist +2 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Records
- 01:10, 6 December 2014 diff hist +10 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Records
- 01:07, 6 December 2014 diff hist -77 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Header
- 01:03, 6 December 2014 diff hist +166 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Did I find interesting variants?
- 01:00, 6 December 2014 diff hist +6 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Did I find interesting variants?
- 00:59, 6 December 2014 diff hist +152 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud indel Ouptut
- 00:55, 6 December 2014 diff hist 0 File:IndelOut.png Mktrost uploaded a new version of "File:IndelOut.png" current
- 23:50, 5 December 2014 diff hist +38 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Setup your run environment
- 23:50, 5 December 2014 diff hist +19 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup in person at the SeqShop Workshop
- 23:49, 5 December 2014 diff hist 0 File:Setup.png Mktrost uploaded a new version of "File:Setup.png" current
- 23:38, 5 December 2014 diff hist +38 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Setup your run environment
- 13:46, 3 December 2014 diff hist +24 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Improvements
- 11:09, 2 December 2014 diff hist -54 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 18:06, 1 December 2014 diff hist +78 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud indel Ouptut
- 14:48, 1 December 2014 diff hist -22 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Improvements
- 22:44, 26 November 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud Indel Input files
- 22:41, 26 November 2014 diff hist +42 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 11:43, 26 November 2014 diff hist +65 N SeqShop: Ancestry On Your Own Genome Mktrost moved page SeqShop: Ancestry On Your Own Genome to SeqShop: Ancestry On Your Own Genome, December 2014 current
- 11:43, 26 November 2014 diff hist 0 m SeqShop: Ancestry On Your Own Genome, December 2014 Mktrost moved page SeqShop: Ancestry On Your Own Genome to SeqShop: Ancestry On Your Own Genome, December 2014
- 11:43, 26 November 2014 diff hist +61 N SeqShop: Calling Your Own Genome Mktrost moved page SeqShop: Calling Your Own Genome to SeqShop: Calling Your Own Genome, December 2014 current
- 11:43, 26 November 2014 diff hist 0 m SeqShop: Calling Your Own Genome, December 2014 Mktrost moved page SeqShop: Calling Your Own Genome to SeqShop: Calling Your Own Genome, December 2014
- 11:42, 26 November 2014 diff hist 0 SeqShop: December 2014
- 11:42, 26 November 2014 diff hist -25 SeqShop: December 2014
- 11:42, 26 November 2014 diff hist +346 SeqShop: December 2014
- 11:41, 26 November 2014 diff hist +73 N SeqShop: Friday - Practicing what we learned Mktrost moved page SeqShop: Friday - Practicing what we learned to SeqShop: Friday - Practicing what we learned, December 2014 current
- 11:41, 26 November 2014 diff hist +76 N SeqShop: Genetic Association Analysis Practical Mktrost moved page SeqShop: Genetic Association Analysis Practical to SeqShop: Genetic Association Analysis Practical, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Genetic Association Analysis Practical, December 2014 Mktrost moved page SeqShop: Genetic Association Analysis Practical to SeqShop: Genetic Association Analysis Practical, December 2014
- 11:41, 26 November 2014 diff hist +77 N SeqShop: Estimates of Genetic Ancestry Practical Mktrost moved page SeqShop: Estimates of Genetic Ancestry Practical to SeqShop: Estimates of Genetic Ancestry Practical, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Estimates of Genetic Ancestry Practical, December 2014 Mktrost moved page SeqShop: Estimates of Genetic Ancestry Practical to SeqShop: Estimates of Genetic Ancestry Practical, December 2014
- 11:41, 26 November 2014 diff hist +62 N SeqShop: Aligning Your Own Genome Mktrost moved page SeqShop: Aligning Your Own Genome to SeqShop: Aligning Your Own Genome, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Aligning Your Own Genome, December 2014 Mktrost moved page SeqShop: Aligning Your Own Genome to SeqShop: Aligning Your Own Genome, December 2014
- 11:41, 26 November 2014 diff hist +80 N SeqShop: Analysis of Structural Variation Practical Mktrost moved page SeqShop: Analysis of Structural Variation Practical to SeqShop: Analysis of Structural Variation Practical, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Analysis of Structural Variation Practical, December 2014 Mktrost moved page SeqShop: Analysis of Structural Variation Practical to SeqShop: Analysis of Structural Variation Practical, December 2014
- 11:40, 26 November 2014 diff hist +88 N SeqShop: Variant Calling and Filtering for INDELs Practical Mktrost moved page SeqShop: Variant Calling and Filtering for INDELs Practical to SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 11:40, 26 November 2014 diff hist 0 m SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for INDELs Practical to SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 13:30, 24 November 2014 diff hist 0 N File:CampusMap.jpg current
- 23:20, 23 November 2014 diff hist -3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Improvements
- 23:13, 23 November 2014 diff hist -182 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Did I find interesting variants?
- 23:13, 23 November 2014 diff hist 0 N File:SamtoolstviewsnpNew.png current
- 23:06, 23 November 2014 diff hist +28 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Genotype Refinement Output
- 23:04, 23 November 2014 diff hist -6 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Genotype Refinement Output
- 23:02, 23 November 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Running GotCloud Genotype Refinement
- 23:01, 23 November 2014 diff hist +3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Running GotCloud Genotype Refinement
- 23:01, 23 November 2014 diff hist 0 N File:GcldrefineOutNew.png current
- 22:53, 23 November 2014 diff hist -1 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Genotype Refinement Input
- 22:50, 23 November 2014 diff hist +3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Filtered VCF
- 22:49, 23 November 2014 diff hist 0 N File:SvmFiltGLNew.png current
- 22:46, 23 November 2014 diff hist +15 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Examining GotCloud SnpCall Output
- 22:38, 23 November 2014 diff hist 0 N File:SvmFiltNew.png current
- 22:31, 23 November 2014 diff hist +6 Understanding vcf-summary output →Example output from vcf-summary current
- 22:31, 23 November 2014 diff hist +3 Understanding vcf-summary output →Example output from vcf-summary
- 22:31, 23 November 2014 diff hist 0 N File:FilterSumNew.png current
- 22:27, 23 November 2014 diff hist 0 N File:GcsnpcallOutNew.png current
- 22:19, 23 November 2014 diff hist +5 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 22:16, 23 November 2014 diff hist 0 N File:SnpcallStartNew.png
- 22:07, 23 November 2014 diff hist +3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 22:07, 23 November 2014 diff hist 0 N File:SnpcallDiagramNew.png
- 21:59, 23 November 2014 diff hist -2 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM List File
- 21:59, 23 November 2014 diff hist 0 N File:BamList2.png
- 21:42, 23 November 2014 diff hist 0 N File:BamList1.png current
- 21:38, 23 November 2014 diff hist +48 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM Index File
- 21:29, 23 November 2014 diff hist 0 N File:BamindexNew.png
- 21:20, 23 November 2014 diff hist -1 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM Index File
- 21:16, 23 November 2014 diff hist +13 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 21:16, 23 November 2014 diff hist -13 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Setup in person at the SeqShop Workshop
- 20:54, 23 November 2014 diff hist +137 SeqShop: December 2014
- 20:53, 23 November 2014 diff hist +86 N SeqShop: Variant Calling and Filtering for SNPs Practical Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 20:53, 23 November 2014 diff hist 0 m SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 20:52, 23 November 2014 diff hist -13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Logging Off
- 20:51, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Accessing BAMs by Position
- 20:51, 23 November 2014 diff hist 0 File:TviewNew.png Mktrost uploaded a new version of "File:TviewNew.png" current
- 20:48, 23 November 2014 diff hist 0 N File:TviewNew.png
- 19:44, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →BAM Files
- 19:43, 23 November 2014 diff hist 0 N File:BamRecNew.png current
- 19:32, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →QC Metrics
- 19:32, 23 November 2014 diff hist 0 N File:QplotpdfNew.png current
- 19:25, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →QC Metrics
- 19:23, 23 November 2014 diff hist 0 N File:QplotsNew.png current
- 19:21, 23 November 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →QC Metrics
- 19:00, 23 November 2014 diff hist +6 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Examining GotCloud Align Output
- 18:59, 23 November 2014 diff hist 0 N File:Contam1New.png current
- 18:51, 23 November 2014 diff hist 0 N File:GcalignOutMNew.png current
- 18:41, 23 November 2014 diff hist +124 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 18:39, 23 November 2014 diff hist 0 N File:GcalignStartNew.png
- 18:08, 23 November 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud Configuration File
- 18:07, 23 November 2014 diff hist 0 N File:GcConfNew.png
- 18:07, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud Configuration File
- 17:57, 23 November 2014 diff hist -9 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud FASTQ List File
- 17:56, 23 November 2014 diff hist 0 File:FqListFASTQ2.png Mktrost uploaded a new version of "File:FqListFASTQ2.png" current
- 17:55, 23 November 2014 diff hist 0 N File:FqListFASTQ2.png
- 17:01, 23 November 2014 diff hist 0 N File:FqindexNew.png current
- 16:58, 23 November 2014 diff hist +73 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud FASTQ Index File
- 16:14, 21 November 2014 diff hist +263 Nm User talk:Kjablons Welcome! current
- 16:14, 21 November 2014 diff hist +1,093 Nm User:Kjablons Creating user page for new user. current
- 14:34, 21 November 2014 diff hist 0 File:AlignDiagram.png Mktrost uploaded a new version of "File:AlignDiagram.png" current
- 14:32, 21 November 2014 diff hist +4 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 12:05, 21 November 2014 diff hist 0 File:Setup.png Mktrost uploaded a new version of "File:Setup.png"
- 11:45, 21 November 2014 diff hist +13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 11:45, 21 November 2014 diff hist -13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup in person at the SeqShop Workshop
- 10:46, 21 November 2014 diff hist +263 Nm User talk:ZhaominWu Welcome! current
- 10:46, 21 November 2014 diff hist +372 Nm User:ZhaominWu Creating user page for new user. current