User contributions
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Jump to navigationJump to search- 14:57, 11 February 2015 diff hist +4 GotCloud: Variant Calling Options →Chromosome X Calling current
- 18:47, 10 February 2015 diff hist +2,006 GotCloud: GenomeSTRiP Pipeline →Configuration File current
- 18:18, 10 February 2015 diff hist +1 GotCloud: GenomeSTRiP Pipeline →Analysis Region Options
- 17:13, 10 February 2015 diff hist +3,346 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 16:46, 10 February 2015 diff hist +311 GotCloud: GenomeSTRiP Pipeline →BAM List File
- 16:46, 10 February 2015 diff hist +66 GotCloud: Variant Calling Pipeline →BAM List File
- 16:45, 10 February 2015 diff hist +299 GotCloud: Variant Calling Pipeline →BAM List File
- 16:42, 10 February 2015 diff hist +1,928 GotCloud: GenomeSTRiP Pipeline →Input Data
- 15:03, 10 February 2015 diff hist +700 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 14:18, 10 February 2015 diff hist -28 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 13:03, 10 February 2015 diff hist +41 GotCloud: GenomeSTRiP Pipeline →Genotyping Pipeline
- 13:02, 10 February 2015 diff hist +50 GotCloud: GenomeSTRiP Pipeline →Discovery Pipeline
- 13:02, 10 February 2015 diff hist +886 GotCloud: GenomeSTRiP Pipeline →Running GotCloud/GenomeSTRiP
- 12:49, 10 February 2015 diff hist +1 GotCloud: GenomeSTRiP Pipeline →Metadata Pipeline
- 18:36, 9 February 2015 diff hist +1,592 GotCloud: GenomeSTRiP Pipeline
- 18:15, 9 February 2015 diff hist +3,007 N GotCloud: GenomeSTRiP Pipeline Created page with "Back to parent: GotCloud == GenomeSTRiP == GenomeSTRiP was developed at the Broad Institute and at the McCarroll Lab at the Harvard Medical School Department of Genetics:..."
- 12:44, 6 February 2015 diff hist -1 Screen Commands current
- 12:44, 6 February 2015 diff hist +215 Screen Commands
- 10:39, 19 January 2015 diff hist +911 GotCloud: FAQs →Variant Calling Pipeline FAQs
- 14:42, 13 January 2015 diff hist +180 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 11:39, 7 January 2015 diff hist +189 GotCloud: Alignment Pipeline →Configuration File
- 14:40, 5 January 2015 diff hist -4 GotCloud: Genetic Reference and Resource Files →Genetic Reference and Resource Files
- 12:17, 18 December 2014 diff hist +313 SeqShop: December 2014 current
- 18:08, 17 December 2014 diff hist +22 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 18:02, 17 December 2014 diff hist +11 SeqShop: Genetic Association Analysis Practical, December 2014 →Run Groupwise Test
- 18:02, 17 December 2014 diff hist -3 SeqShop: Genetic Association Analysis Practical, December 2014 →Run Groupwise Test
- 17:57, 17 December 2014 diff hist -1 SeqShop: Genetic Association Analysis Practical, December 2014 →Run Groupwise Test
- 17:56, 17 December 2014 diff hist 0 File:Single.epacts.qq.png Mktrost uploaded a new version of "File:Single.epacts.qq.png" current
- 17:53, 17 December 2014 diff hist +2 SeqShop: Genetic Association Analysis Practical, December 2014 →Single Variant Association Analysis
- 17:43, 17 December 2014 diff hist 0 SeqShop: Genetic Association Analysis Practical, December 2014
- 17:43, 17 December 2014 diff hist -64 SeqShop: Genetic Association Analysis Practical, December 2014 →Return to Ancestry on your own genome
- 17:42, 17 December 2014 diff hist +53 SeqShop: Genetic Association Analysis Practical, December 2014 →Introduction
- 17:26, 17 December 2014 diff hist +18 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 17:25, 17 December 2014 diff hist +66 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 17:23, 17 December 2014 diff hist -2 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 17:21, 17 December 2014 diff hist +64 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 17:14, 17 December 2014 diff hist -64 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 17:13, 17 December 2014 diff hist -13 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 17:12, 17 December 2014 diff hist +13 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup in person at the SeqShop Workshop
- 17:10, 17 December 2014 diff hist +53 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Introduction
- 17:10, 17 December 2014 diff hist -44 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Restarting SNP Call on your own Genome
- 17:09, 17 December 2014 diff hist +99 SeqShop: Analysis of Structural Variation Practical, December 2014 →What does a real SV look like? current
- 17:09, 17 December 2014 diff hist +99 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Normalization current
- 17:09, 17 December 2014 diff hist +99 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →What is GotCloud snpcall doing?
- 17:09, 17 December 2014 diff hist +98 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Logging Off
- 17:08, 17 December 2014 diff hist -139 SeqShop: Analysis of Structural Variation Practical, December 2014 →Starting SNP Call on your own Genome
- 16:35, 17 December 2014 diff hist 0 SeqShop: Analysis of Structural Variation Practical, December 2014 →How many variants are filtered out?
- 16:17, 17 December 2014 diff hist +13 SeqShop: Analysis of Structural Variation Practical, December 2014
- 16:15, 17 December 2014 diff hist +14 SeqShop: Analysis of Structural Variation Practical, December 2014 →Introduction
- 16:09, 17 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 16:00, 17 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:59, 17 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:48, 17 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 15:33, 17 December 2014 diff hist 0 File:SplitOut.png Mktrost uploaded a new version of "File:SplitOut.png" current
- 15:22, 17 December 2014 diff hist 0 File:SnpcallDiagramNew.png Mktrost uploaded a new version of "File:SnpcallDiagramNew.png" current
- 15:18, 17 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 15:17, 17 December 2014 diff hist +13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Logging Off
- 15:05, 17 December 2014 diff hist 0 File:GcConfNew.png Mktrost uploaded a new version of "File:GcConfNew.png" current
- 14:56, 17 December 2014 diff hist -113 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 14:55, 17 December 2014 diff hist +1 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 12:07, 17 December 2014 diff hist -33 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Download & Build GotCloud
- 11:09, 17 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud snpcall.pdf" current
- 20:40, 16 December 2014 diff hist +1,704 GotCloud: Versions
- 11:48, 16 December 2014 diff hist 0 File:RefDir.png Mktrost uploaded a new version of "File:RefDir.png" current
- 11:47, 16 December 2014 diff hist 0 File:RefDir.png Mktrost uploaded a new version of "File:RefDir.png"
- 10:56, 16 December 2014 diff hist +35 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 10:53, 16 December 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 12:16, 15 December 2014 diff hist -191 SeqShop: Calling Your Own Genome, December 2014 →Wednesday FEEDBACK! current
- 12:16, 15 December 2014 diff hist -175 SeqShop: Calling Your Own Genome, December 2014 →Tuesday FEEDBACK!
- 12:15, 15 December 2014 diff hist -170 SeqShop: Calling Your Own Genome, December 2014 →WORKSHOP FEEDBACK!
- 16:36, 12 December 2014 diff hist +48 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:34, 12 December 2014 diff hist +181 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:31, 12 December 2014 diff hist +18 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:25, 12 December 2014 diff hist +125 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:22, 12 December 2014 diff hist +277 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:09, 12 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 15:58, 12 December 2014 diff hist +246 SeqShop: Calling Your Own Genome, December 2014 →Annotation / Lookup against dbSNP
- 15:22, 12 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014 →Annotation / Lookup against dbSNP
- 12:43, 12 December 2014 diff hist -75 SeqShop: Ancestry On Your Own Genome, December 2014 →Visualizing Ancestry current
- 12:26, 12 December 2014 diff hist -100 SeqShop: Ancestry On Your Own Genome, December 2014 →Looking at Calling results
- 22:28, 11 December 2014 diff hist -97 SeqShop: December 2014
- 22:25, 11 December 2014 diff hist -36 SeqShop: Ancestry On Your Own Genome, December 2014 →Return to Calling your own Genome
- 22:24, 11 December 2014 diff hist -34 SeqShop: Calling Your Own Genome, December 2014 →Return to SeqShop: Ancestry On Your Own Genome, December 2014
- 22:24, 11 December 2014 diff hist -625 SeqShop: Calling Your Own Genome, December 2014 →Friday
- 22:21, 11 December 2014 diff hist +164 SeqShop: Genetic Association Analysis Practical, December 2014
- 22:21, 11 December 2014 diff hist +314 SeqShop: Ancestry On Your Own Genome, December 2014 →Run
- 22:18, 11 December 2014 diff hist -1 SeqShop: Calling Your Own Genome, December 2014 →WORKSHOP FEEDBACK!
- 22:13, 11 December 2014 diff hist +22 SeqShop: Ancestry On Your Own Genome, December 2014 →Step 1: bam --> pileup
- 22:08, 11 December 2014 diff hist -16 SeqShop: Ancestry On Your Own Genome, December 2014 →Step 1: bam --> pileup
- 22:05, 11 December 2014 diff hist +718 SeqShop: Ancestry On Your Own Genome, December 2014
- 21:30, 11 December 2014 diff hist 0 SeqShop: Calling Your Own Genome, December 2014
- 12:43, 11 December 2014 diff hist +44 SeqShop: December 2014
- 12:43, 11 December 2014 diff hist 0 N File:Seqshop genetic association analysis 141211.pdf current
- 11:39, 11 December 2014 diff hist +36 SeqShop: Calling Your Own Genome, December 2014 →Checking Completion
- 22:40, 10 December 2014 diff hist +169 SeqShop: Calling Your Own Genome, December 2014 →Friday: Reviewing SNPCALL Results
- 22:34, 10 December 2014 diff hist 0 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Step 1: bam --> pileup
- 22:33, 10 December 2014 diff hist +2 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Getting started
- 22:29, 10 December 2014 diff hist +60 SeqShop: Ancestry On Your Own Genome, December 2014 →Return to Calling your own Genome
- 22:26, 10 December 2014 diff hist +200 SeqShop: Calling Your Own Genome, December 2014 →Friday
- 22:25, 10 December 2014 diff hist +217 SeqShop: Ancestry On Your Own Genome, December 2014 →Step 1: bam --> pileup