User contributions
4 October 2011
BamUtil: convert
BAM File Recovery: better grammar and more text
+229
BamUtil: convert
add recovery section
+1,047
BamUtil: convert
Parameters: add recover option
m+60
2 November 2010
30 July 2010
SAM
What is SAM: second test
m+64
SAM
What is SAM: test edit - revert
m+59
SAM
What is SAM: refer to BamFile c++ library code
+136
BAM
elaborate on details
+477
29 July 2010
16 July 2010
22 June 2010
BamGenotypeCheck
Input Files: fix link
m-2
BamGenotypeCheck
Input Files: add fasta link
+60
BamGenotypeCheck
Input Files: more detail
+21
BamGenotypeCheck
Filtering: add -f option
+81
Main Page
Sequence Analysis Tools: change name
m+1
BamGenotypeCheck
rename again
+4
GenotypeIDcheck
moved GenotypeIDcheck to BamGenotypeCheck: a better name was suggested
BamGenotypeCheck
moved GenotypeIDcheck to BamGenotypeCheck: a better name was suggested
m
21 June 2010
Software
change layout a little
m+18
BamGenotypeCheck
total rewrite - new program
+488
Main Page
rename BAMidentity check to genotypeIDcheck to match new program name
m-1
BamIdentityCheck
moved BamIdentityCheck to GenotypeIDcheck: now matches the new program name
BamGenotypeCheck
moved BamIdentityCheck to GenotypeIDcheck: now matches the new program name
m
8 June 2010
20 April 2010
13 April 2010
C++ Class: Pedigree Example
Example
+320
C++ Class: Pedigree Example
Example
+532
C++ Class: Pedigree Example
Example
+1
C++ Class: Pedigree Example
Created page with '== Example == <source lang="cpp"> #include "Pedigree.h" int main(int argc, char ** argv); { Pedigree ped; // The data file contains a description of the contents of the…'
Verifying Sample Identities - Implementation
Mathematical Details
+200
Verifying Sample Identities - Implementation
Mathematical Details
+574
Verifying Sample Identities - Implementation
Mathematical Details
+79
Verifying Sample Identities - Implementation
Mathematical Details
+1,786
Verifying Sample Identities - Implementation
Mathematical Details
+233
Verifying Sample Identities - Implementation
Mathematical Details
-8
Verifying Sample Identities - Implementation
no edit summary
+78
Verifying Sample Identities - Implementation
Created page with '== Principle == We should be able to verify that the right sample has been sequenced by comparing base calls in a read to known genotypes for a sample. If the sample has been s…'
9 April 2010
Karma
Karma CHANGELOG: fill in 0.9.0 changes
+402
Karma
add TODO items and begin listing change history
+478
8 April 2010
Karma
add features/benefits
+372
Karma
Other useful links
+1
Karma
Karma Performance Tuning
+70
Karma
fill in build info
+477
Karma
Dependencies: fill em in
+166
Karma
fill in performance details
+3,588
Karma
add mapping examples
-169
Karma
populate alignment section
+930
Karma
Testing the build: more detail
m+84
Karma
Testing the build: flesh it out
+493
