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, 17:26, 25 June 2014
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| ** The Configuration file cannot read environment variables, so we need to tell GotCloud the path to the input files, ${SS} | | ** The Configuration file cannot read environment variables, so we need to tell GotCloud the path to the input files, ${SS} |
| ** Alternatively, gotcloud.conf could be updated to specify the full paths | | ** Alternatively, gotcloud.conf could be updated to specify the full paths |
− | * <code>--out_dir</code> tells GotCloud where to write the output.[[File:gcalignStart.png|850px]] | + | * <code>--out_dir</code> tells GotCloud where to write the output. |
| ** This could be specified in gotcloud.conf, but to allow you to use the ${OUT} to change the output location, it is specified on the command-line | | ** This could be specified in gotcloud.conf, but to allow you to use the ${OUT} to change the output location, it is specified on the command-line |
| + | |
| + | [[File:gcalignStart.png|850px]] |
| | | |
| This should take 1-3 minutes to run. | | This should take 1-3 minutes to run. |