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Revision as of 17:29, 25 June 2014
, 17:29, 25 June 2014→Accessing BAMs by Position
Let's visualize what reads in that area look like using samtools tview:
Let's visualize what reads in that area look like using samtools tview:
${GC}/bin/samtools tview ${OUT}/bams/HG00551.recal.bam ${REF}/human.g1k.v37.chr22.fa
${GC}/bin/samtools tview ${OUT}/bams/HG00551.recal.bam ${SS}/ref22/human.g1k.v37.chr22.fa
* Type ‘g’
* Type ‘g’
** Type 22:36907000
** Type 22:36907000
