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Revision as of 15:18, 8 August 2014
, 15:18, 8 August 2014→Reference Files
** Configuration File Setting: <code>INDEL_PREFIX = path/indels.sites.hg19</code>
** Configuration File Setting: <code>INDEL_PREFIX = path/indels.sites.hg19</code>
** <code>path/</code> contains <code>indels.sites.hg19.chr20.vcf</code> for each chromosome being processed
** <code>path/</code> contains <code>indels.sites.hg19.chr20.vcf</code> for each chromosome being processed
** Alternatively, if you have all chromosomes in a single VCF file, you can specify (it can be, but does not have to be a gz file): <code>INDEL_VCF = path/indel.sites.hg19.vcf</code>
* DBSNP File vcf.gz file (must be indexed with tabix)
* DBSNP File vcf.gz file (must be indexed with tabix)
** Configuration File Setting: <code>DBSNP_VCF = path/dbsnp_135.b37.vcf.gz</code>
** Configuration File Setting: <code>DBSNP_VCF = path/dbsnp_135.b37.vcf.gz</code>
