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Revision as of 15:15, 8 August 2014
, 15:15, 8 August 2014→BAM files
== BAM files ==
== BAM files ==
The BAM files need to be duplicate-marked and base-quality recalibrated in order to obtain high quality SNP calls. Generating these BAM files from original FASTQs is documented elsewhere as part of the [[Alignment Pipeline]] of gotCloud.
The BAM files need to be duplicate-marked and base-quality recalibrated in order to obtain high quality SNP calls. Generating these BAM files from original FASTQs is documented as part of the [[Alignment Pipeline]] of GotCloud.
== Index File ==
== Index File ==
