66
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchno edit summary
BATCHOPTS: This parameter works with BATCHTYPE when you specify "mosix" or "slurm". For example, when you define mosix, this parameter can be "-E/tmp -i -m2000 -j10,11,12,13,14,15,16 sh -c"; when you define "slurm", it can be "--partition=1000g --time=0:30:0"
BATCHOPTS: This parameter works with BATCHTYPE when you specify "mosix" or "slurm". For example, when you define mosix, this parameter can be "-E/tmp -i -m2000 -j10,11,12,13,14,15,16 sh -c"; when you define "slurm", it can be "--partition=1000g --time=0:30:0"
== Reference Files ==
We provide two kinds of reference files. The difference between these reference data are LD buddy definitions.
LD window size = 1MB; LD r2 ≥ 0.7：
All LD buddies are in window size 1MB and r2 is greater than and equals to 0.7. If you want to calculate LD buddies in 1MB and r2 ≥ 0.7 (such as 0.9,0.8,0.7), please use these reference data.
LD window size = 1MB; LD r2 ≥ 0.2：
All LD buddies are in window size 1MB and r2 is greater than and equals to 0.2. If you want to calculate LD buddies in 1MB and r2 ≥ 0.2 (such as 0.6,0.5,0.4,0.3,0.2), please use these reference data.
== Results Output ==
== Results Output ==
The file StatisticSummaryFile.txt in the output directory contains enrichment results with the following information:
The file StatisticSummaryFile.txt in the output directory contains enrichment results with the following information:
