Changes

== Reference Files  ==

== Reference Files  ==

We provide two kinds of reference files. The difference between these reference data are LD buddy definitions.

We provide two kinds of reference files. The difference between these reference data are LD buddy definitions.

LD window size = 1MB; LD r2 ≥ 0.7：

*LD window size = 1MB; LD r2 ≥ 0.7：

    All LD buddies are in window size 1MB and r2 is greater than and equals to 0.7. If you want to calculate LD buddies in 1MB and r2 ≥ 0.7 (such as 0.9,0.8,0.7), please use these reference data.

**All LD buddies are in window size 1MB and r2 is greater than and equals to 0.7. If you want to calculate LD buddies in 1MB and r2 ≥ 0.7 (such as 0.9,0.8,0.7), please use these reference data.

LD window size = 1MB; LD r2 ≥ 0.2：  

*LD window size = 1MB; LD r2 ≥ 0.2：  

    All LD buddies are in window size 1MB and r2 is greater than and equals to 0.2. If you want to calculate LD buddies in 1MB and r2 ≥ 0.2 (such as 0.6,0.5,0.4,0.3,0.2), please use these reference data.

**All LD buddies are in window size 1MB and r2 is greater than and equals to 0.2. If you want to calculate LD buddies in 1MB and r2 ≥ 0.2 (such as 0.6,0.5,0.4,0.3,0.2), please use these reference data.

== Results Output ==

== Results Output ==

The file StatisticSummaryFile.txt in the output directory contains enrichment results with the following information:

The file StatisticSummaryFile.txt in the output directory contains enrichment results with the following information: