Changes

When a record is found in both input files, but a difference is found, the record from the first file is written with additional tags to indicate the values from the second file, using the following tags:

When a record is found in both input files, but a difference is found, the record from the first file is written with additional tags to indicate the values from the second file, using the following tags:

* ZF - Flag

* ZF - Flag

* ZP - Chrom/Pos

* ZP - Chromosome:1-based Position

* ZC - Cigar

* ZC - Cigar

* ZM - Mapping Quality

* ZM - Mapping Quality

* ZN - Mate chrom/pos

* ZN - Chromosome:1-based Mate Position

* ZI - Insert Size

* ZI - Insert Size

* ZS - Sequence

* ZS - Sequence