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91 bytes added ,  13:55, 21 May 2012
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# specified name with _only_<in1>.sam/bam with records only in the in1 file
 
# specified name with _only_<in1>.sam/bam with records only in the in1 file
 
# specified name with _only_<in2>.sam/bam with records only in the in2 file
 
# specified name with _only_<in2>.sam/bam with records only in the in2 file
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Records that are identical in the two files are not written in any of these output files.
    
When a record is found in both input files, but a difference is found, the record from the first file is written with additional tags to indicate the values from the second file, using the following tags:
 
When a record is found in both input files, but a difference is found, the record from the first file is written with additional tags to indicate the values from the second file, using the following tags:

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