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, 10:13, 1 June 2016
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| BATCHOPTS: This parameter works with BATCHTYPE when you specify "mosix" or "slurm". For example, when you define mosix, this parameter can be "-E/tmp -i -m2000 -j10,11,12,13,14,15,16 sh -c"; when you define "slurm", it can be "--partition=1000g --time=0:30:0" | | BATCHOPTS: This parameter works with BATCHTYPE when you specify "mosix" or "slurm". For example, when you define mosix, this parameter can be "-E/tmp -i -m2000 -j10,11,12,13,14,15,16 sh -c"; when you define "slurm", it can be "--partition=1000g --time=0:30:0" |
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| + | == Reference Files == |
| + | We provide two kinds of reference files. The difference between these reference data are LD buddy definitions. |
| + | LD window size = 1MB; LD r2 ≥ 0.7: |
| + | All LD buddies are in window size 1MB and r2 is greater than and equals to 0.7. If you want to calculate LD buddies in 1MB and r2 ≥ 0.7 (such as 0.9,0.8,0.7), please use these reference data. |
| + | LD window size = 1MB; LD r2 ≥ 0.2: |
| + | All LD buddies are in window size 1MB and r2 is greater than and equals to 0.2. If you want to calculate LD buddies in 1MB and r2 ≥ 0.2 (such as 0.6,0.5,0.4,0.3,0.2), please use these reference data. |
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| == Results Output == | | == Results Output == |
| The file StatisticSummaryFile.txt in the output directory contains enrichment results with the following information: | | The file StatisticSummaryFile.txt in the output directory contains enrichment results with the following information: |