From Genome Analysis Wiki
Jump to navigationJump to search
153 bytes added
, 13:56, 13 July 2011
Line 79: |
Line 79: |
| --tstv_denovo : the prior ts/tv ratio of ''de novo'' mutations. [''Default: 2.0''] | | --tstv_denovo : the prior ts/tv ratio of ''de novo'' mutations. [''Default: 2.0''] |
| --minLLR_denovo : minimum value of log10 likelihood ratio of allowing vs. disallowing ''de novo'' mutations in the data to output [''Default: 1.0''] | | --minLLR_denovo : minimum value of log10 likelihood ratio of allowing vs. disallowing ''de novo'' mutations in the data to output [''Default: 1.0''] |
| + | |
| + | --gl_off: not to output genotype likelihood values for each individual. Default is to output 3 GLs for polymorphisms and 10 GLs for de novo mutations |
| | | |
| == Output files == | | == Output files == |