SeqShop: May 2015: Difference between revisions
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Sequence Analysis Workshop | Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/ | ||
Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda | |||
{| class="wikitable" cellpadding=5 | |||
|- | |||
! style="background:#ABE" colspan="3"|Monday | |||
|- | |||
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | |||
|- | |||
| [[Media:2015.05 - Workshop Intro.pdf|Welcome/Design of Human Genetic Studies]] | |||
| [[Media:May2015 SeqShop - Linux.pdf|SeqShop: Quick intro to Linux]] | |||
|rowspan="2" | ''[[SeqShop: Aligning Your Own Genome, May 2015|SeqShop: Aligning Your Own Genome]]'' | |||
|- | |||
| [[Media:Mapping and assembly May2015.pdf|Sequence Mapping and Assembly]] | |||
| [[SeqShop: Sequence Mapping and Assembly Practical, May 2015|SeqShop: Sequence Mapping and Assembly Practical]] | |||
|- | |||
! style="background:#ABE" colspan="3" | Tuesday | |||
|- | |||
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | |||
|- | |||
| [[Media:seqshop_may_2015_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]] | |||
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015|SeqShop: Variant Calling and Filtering for SNPs Practical]] | |||
[http://bam.iobio.io iobio: Visualizing BAM statistics] | |||
| rowspan="2"|''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]'' | |||
|- | |||
| [[Media:Analysis of SV May2015.pdf|Analysis of Structural Variation - Part 1]] | |||
[[Media:May2015 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]] | |||
| [[SeqShop: Analysis of Structural Variation Practical, May 2015|SeqShop: Analysis of Structural Variation Practical]] | |||
|- | |||
! style="background:#ABE" colspan="3" | Wednesday | |||
|- | |||
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | |||
|- | |||
| [[Media:Seqshop 2015 non-SNP variation.pdf|Variant Calling and Filtering for INDELs]] | |||
[[Media:seqshop_2015_day3_indel_assembly.pdf|More Lessons on Indels + De-novo Assembly Methods]] | |||
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015|SeqShop: Variant Calling and Filtering for INDELs Practical]] | |||
|''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]'' | |||
|- | |||
! style="background:#ABE" colspan="3" | Thursday | |||
|- | |||
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | |||
|- | |||
| [[Media:Stratification.pptx|Estimates of Genetic Ancestry]] | |||
|[[SeqShop: Estimates of Genetic Ancestry Practical, May 2015| SeqShop: Estimates of Genetic Ancestry Practical]] | |||
| | |||
|- | |||
| [[Media:Seqshop genetic association analysis 150521.pptx|Genetic Association Analysis]] | |||
|[[SeqShop: Association Analysis, May 2015| SeqShop: Association Analysis]] | |||
| ''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]'' | |||
|- | |||
! style="background:#ABE" colspan="3" | Friday | |||
|- | |||
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | |||
|- | |||
| [[Media:2015.05_-_Workshop_Closing.pdf|Summary]] | |||
| | |||
|''[[SeqShop: Ancestry On Your Own Genome, May 2015|SeqShop: Ancestry On Your Own Genome]]'' | |||
|- | |||
|} | |||
Latest revision as of 10:40, 22 May 2015
Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/
Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda
| Monday | ||
|---|---|---|
| Lecture | Practical | Own Genome Analysis |
| Welcome/Design of Human Genetic Studies | SeqShop: Quick intro to Linux | SeqShop: Aligning Your Own Genome |
| Sequence Mapping and Assembly | SeqShop: Sequence Mapping and Assembly Practical | |
| Tuesday | ||
| Lecture | Practical | Own Genome Analysis |
| Variant Calling and Filtering for SNPs | SeqShop: Variant Calling and Filtering for SNPs Practical | SeqShop: Calling Your Own Genome |
| Analysis of Structural Variation - Part 1 | SeqShop: Analysis of Structural Variation Practical | |
| Wednesday | ||
| Lecture | Practical | Own Genome Analysis |
| Variant Calling and Filtering for INDELs | SeqShop: Variant Calling and Filtering for INDELs Practical | SeqShop: Calling Your Own Genome |
| Thursday | ||
| Lecture | Practical | Own Genome Analysis |
| Estimates of Genetic Ancestry | SeqShop: Estimates of Genetic Ancestry Practical | |
| Genetic Association Analysis | SeqShop: Association Analysis | SeqShop: Calling Your Own Genome |
| Friday | ||
| Lecture | Practical | Own Genome Analysis |
| Summary | SeqShop: Ancestry On Your Own Genome | |
