SeqShop: December 2014

Sequence Analysis Workshop December 8-12, 2014: http://seqshop.sph.umich.edu/

Workshop Schedule: SeqShopScheduleDec2014.pdf

Monday	Lecture	Practical
	Brief Introduction and Background	SeqShop: Practical Intro
	Design of Human Genetic Studies	SeqShop: Sequence Mapping and Assembly Practical
	Sequence Mapping and Assembly	Live experimentation with IOBIO
		SeqShop: Aligning Your Own Genome
Tuesday	Lecture	Practical
	Variant Calling and Filtering for SNPs	SeqShop: Variant Calling and Filtering for SNPs Practical
	Variant Calling and Filtering for INDELs	SeqShop: Variant Calling and Filtering for INDELs Practical
		SeqShop: Calling Your Own Genome
Wednesday	Lecture	Practical
	Analysis of Structural Variation - Part 1 Analysis of Structural Variation - Part 2	SeqShop: Analysis of Structural Variation Practical SeqShop: Calling Your Own Genome
Thursday	Lecture	Practical
	Estimates of Genetic Ancestry	SeqShop: Calling Your Own Genome SeqShop: Estimates of Genetic Ancestry Practical
	Genetic Association Analysis
Friday	Lecture	Practical
	Example of a Whole Genome Association Study	SeqShop: Genetic Association Analysis Practical
		SeqShop: Ancestry On Your Own Genome
		SeqShop: Friday - Practicing what we learned