SeqShop: May 2015: Difference between revisions

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| [[Media:Sequencing symposium 2014.pptx|Design of Human Genetic Studies]]
| [[Media:Sequencing symposium 2014.pptx|Design of Human Genetic Studies]]
| [http://bam.iobio.io iobio: Visualizing BAM statistics]
| [[SeqShop: Sequence Mapping and Assembly Practical, May 2015|SeqShop: Sequence Mapping and Assembly Practical]]
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| [[Media:Mapping and assemblyDec2014.pdf|Sequence Mapping and Assembly]]
| [[Media:Mapping and assemblyDec2014.pdf|Sequence Mapping and Assembly]]
| [[SeqShop: Sequence Mapping and Assembly Practical, May 2015|SeqShop: Sequence Mapping and Assembly Practical]]
| [http://bam.iobio.io iobio: Visualizing BAM statistics]
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! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''

Revision as of 15:48, 15 May 2015

Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/

Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda


Monday Lecture Practical Own Genome Analysis
Brief Introduction and Background SeqShop: Quick intro to Linux SeqShop: Aligning Your Own Genome
Design of Human Genetic Studies SeqShop: Sequence Mapping and Assembly Practical
Sequence Mapping and Assembly iobio: Visualizing BAM statistics
Tuesday Lecture Practical Own Genome Analysis
Variant Calling and Filtering for SNPs SeqShop: Variant Calling and Filtering for SNPs Practical SeqShop: Calling Your Own Genome
Variant Calling and Filtering for INDELs SeqShop: Variant Calling and Filtering for INDELs Practical
Wednesday Lecture Practical Own Genome Analysis
Analysis of Structural Variation - Part 1

Analysis of Structural Variation - Part 2

SeqShop: Analysis of Structural Variation Practical SeqShop: Calling Your Own Genome
Thursday Lecture Practical Own Genome Analysis
Estimates of Genetic Ancestry SeqShop: Estimates of Genetic Ancestry Practical SeqShop: Ancestry On Your Own Genome
Genetic Association Analysis SeqShop: Association Analysis
Friday Lecture Practical Own Genome Analysis
Example of a Whole Genome Association Study SeqShop: Genetic Association Analysis Practical
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