SeqShop: May 2015: Difference between revisions

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| [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
| [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014|SeqShop: Variant Calling and Filtering for SNPs Practical]]
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015|SeqShop: Variant Calling and Filtering for SNPs Practical]]
| rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
| rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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| [[Media:Variant Calling and Filtering for INDELs.pdf|Variant Calling and Filtering for INDELs]]
| [[Media:Variant Calling and Filtering for INDELs.pdf|Variant Calling and Filtering for INDELs]]
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014|SeqShop: Variant Calling and Filtering for INDELs Practical]]
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015|SeqShop: Variant Calling and Filtering for INDELs Practical]]
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! style="background:#ABE" | Wednesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
! style="background:#ABE" | Wednesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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| [[Media:Dec2014 Analysis of SV.pdf|Analysis of Structural Variation - Part 1]]
| [[Media:Dec2014 Analysis of SV.pdf|Analysis of Structural Variation - Part 1]]
[[Media:Dec2014 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
[[Media:Dec2014 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
| [[SeqShop: Analysis of Structural Variation Practical, December 2014|SeqShop: Analysis of Structural Variation Practical]]
| [[SeqShop: Analysis of Structural Variation Practical, May 2015|SeqShop: Analysis of Structural Variation Practical]]
|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]''
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Revision as of 20:47, 3 May 2015

Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/

Workshop Schedule: SeqShopScheduleDec2014.pdf


Monday Lecture Practical Own Genome Analysis
Brief Introduction and Background SeqShop: Practical Intro SeqShop: Aligning Your Own Genome
Design of Human Genetic Studies
Sequence Mapping and Assembly SeqShop: Sequence Mapping and Assembly Practical

Live experimentation with IOBIO

Tuesday Lecture Practical Own Genome Analysis
Variant Calling and Filtering for SNPs SeqShop: Variant Calling and Filtering for SNPs Practical SeqShop: Calling Your Own Genome
Variant Calling and Filtering for INDELs SeqShop: Variant Calling and Filtering for INDELs Practical
Wednesday Lecture Practical Own Genome Analysis
Analysis of Structural Variation - Part 1

Analysis of Structural Variation - Part 2

SeqShop: Analysis of Structural Variation Practical SeqShop: Calling Your Own Genome
Thursday Lecture Practical Own Genome Analysis
Estimates of Genetic Ancestry SeqShop: Estimates of Genetic Ancestry Practical SeqShop: Calling Your Own Genome
Genetic Association Analysis
Friday Lecture Practical Own Genome Analysis
SeqShop: Genetic Association Analysis Practical SeqShop: Ancestry On Your Own Genome

SeqShop: Calling Your Own Genome

Example of a Whole Genome Association Study
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