Difference between revisions of "SeqShop: May 2015"

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Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/
 
Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/
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Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda
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{| class="wikitable" cellpadding=5
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|-
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! style="background:#ABE" colspan="3"|Monday
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|-
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! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|-
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| [[Media:2015.05 - Workshop Intro.pdf|Welcome/Design of Human Genetic Studies]]
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| [[Media:May2015 SeqShop - Linux.pdf|SeqShop: Quick intro to Linux]]
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|rowspan="2" | ''[[SeqShop: Aligning Your Own Genome, May 2015|SeqShop: Aligning Your Own Genome]]''
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|-
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| [[Media:Mapping and assembly May2015.pdf|Sequence Mapping and Assembly]]
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| [[SeqShop: Sequence Mapping and Assembly Practical, May 2015|SeqShop: Sequence Mapping and Assembly Practical]]
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|-
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! style="background:#ABE" colspan="3" | Tuesday
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|-
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! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|-
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| [[Media:seqshop_may_2015_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]]
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| [[SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015|SeqShop: Variant Calling and Filtering for SNPs Practical]]
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[http://bam.iobio.io iobio: Visualizing BAM statistics]
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| rowspan="2"|''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]''
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|-
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| [[Media:Analysis of SV May2015.pdf|Analysis of Structural Variation - Part 1]]
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[[Media:May2015 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]]
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| [[SeqShop: Analysis of Structural Variation Practical, May 2015|SeqShop: Analysis of Structural Variation Practical]]
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|-
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! style="background:#ABE" colspan="3" | Wednesday
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|-
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! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|-
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| [[Media:Seqshop 2015 non-SNP variation.pdf|Variant Calling and Filtering for INDELs]]
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[[Media:seqshop_2015_day3_indel_assembly.pdf|More Lessons on Indels + De-novo Assembly Methods]]
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| [[SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015|SeqShop: Variant Calling and Filtering for INDELs Practical]]
 +
|''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]''
 +
|-
 +
! style="background:#ABE" colspan="3" | Thursday
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|-
 +
! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|-
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| [[Media:Stratification.pptx|Estimates of Genetic Ancestry]]
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|[[SeqShop: Estimates of Genetic Ancestry Practical, May 2015| SeqShop: Estimates of Genetic Ancestry Practical]]
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|
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|-
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| [[Media:Seqshop genetic association analysis 150521.pptx|Genetic Association Analysis]]
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|[[SeqShop: Association Analysis, May 2015| SeqShop: Association Analysis]]
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| ''[[SeqShop: Calling Your Own Genome, May 2015|SeqShop: Calling Your Own Genome]]''
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|-
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! style="background:#ABE" colspan="3" | Friday
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|-
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! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis''
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|-
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| [[Media:2015.05_-_Workshop_Closing.pdf|Summary]]
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|
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|''[[SeqShop: Ancestry On Your Own Genome, May 2015|SeqShop: Ancestry On Your Own Genome]]''
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|-
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|}

Latest revision as of 10:40, 22 May 2015

Sequence Analysis Workshop May 18-22, 2015: http://seqshop.sph.umich.edu/

Course Agenda: http://seqshop.sph.umich.edu/index.php/course-agenda


Monday
Lecture Practical Own Genome Analysis
Welcome/Design of Human Genetic Studies SeqShop: Quick intro to Linux SeqShop: Aligning Your Own Genome
Sequence Mapping and Assembly SeqShop: Sequence Mapping and Assembly Practical
Tuesday
Lecture Practical Own Genome Analysis
Variant Calling and Filtering for SNPs SeqShop: Variant Calling and Filtering for SNPs Practical

iobio: Visualizing BAM statistics

SeqShop: Calling Your Own Genome
Analysis of Structural Variation - Part 1

Analysis of Structural Variation - Part 2

SeqShop: Analysis of Structural Variation Practical
Wednesday
Lecture Practical Own Genome Analysis
Variant Calling and Filtering for INDELs

More Lessons on Indels + De-novo Assembly Methods

SeqShop: Variant Calling and Filtering for INDELs Practical SeqShop: Calling Your Own Genome
Thursday
Lecture Practical Own Genome Analysis
Estimates of Genetic Ancestry SeqShop: Estimates of Genetic Ancestry Practical
Genetic Association Analysis SeqShop: Association Analysis SeqShop: Calling Your Own Genome
Friday
Lecture Practical Own Genome Analysis
Summary SeqShop: Ancestry On Your Own Genome