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Jump to navigationJump to search- 16:32, 19 June 2014 diff hist +1 SeqShop: Ancestry On Your Own Genome, June 2014 →Estimate ancestry
- 16:19, 19 June 2014 diff hist +3 SeqShop: Ancestry On Your Own Genome, June 2014 →Setup
- 16:16, 19 June 2014 diff hist -8 SeqShop: Ancestry On Your Own Genome, June 2014 →Setup
- 16:10, 19 June 2014 diff hist +66 SeqShop: June 2014
- 16:07, 19 June 2014 diff hist +297 SeqShop: Genetic Association Analysis Practical, June 2014
- 16:04, 19 June 2014 diff hist +6 SeqShop: June 2014
- 16:02, 19 June 2014 diff hist +49 SeqShop: June 2014
- 15:08, 19 June 2014 diff hist +1,052 N SeqShop: Calling Your Own Genome, June 2014 Created page with "{{SeqShopLogin}} == Setup == Set these values. If you used a different path for any of these, please update here. Also, be sure to specify your sample name instead of Sampl..."
- 15:08, 19 June 2014 diff hist -3 SeqShop: Ancestry On Your Own Genome, June 2014 →Estimate ancestry
- 14:14, 19 June 2014 diff hist +654 SeqShop: Ancestry On Your Own Genome, June 2014
- 13:09, 19 June 2014 diff hist +10 SeqShop: Ancestry On Your Own Genome, June 2014 →Step 2: pileup --> seq
- 12:39, 19 June 2014 diff hist -26 SeqShop: Ancestry On Your Own Genome, June 2014 →Step 2: pileup --> seq
- 12:08, 19 June 2014 diff hist +916 N SeqShop: Ancestry On Your Own Genome, June 2014 Created page with "{{SeqShopLogin}} == Setup == Set these values. If you used a different path for any of these, please update here. Also, be sure to specify your sample name instead of Sampl..."
- 10:36, 19 June 2014 diff hist +18 SeqShop: Estimates of Genetic Ancestry Practical, June 2014
- 12:08, 18 June 2014 diff hist +35 SeqShop: June 2014
- 12:07, 18 June 2014 diff hist 0 N File:Worshop2014-ancestry.pdf current
- 10:50, 18 June 2014 diff hist +273 SeqShop: Aligning Your Own Genome, June 2014 →Using a Script
- 10:50, 18 June 2014 diff hist 0 N File:BuildIndex.png current
- 10:28, 18 June 2014 diff hist +1,193 SeqShop: Aligning Your Own Genome, June 2014 →Generating the index file listing your FASTQs
- 10:05, 18 June 2014 diff hist +1,274 SeqShop: Aligning Your Own Genome, June 2014
- 02:39, 18 June 2014 diff hist +214 SeqShop: Aligning Your Own Genome, June 2014
- 02:24, 18 June 2014 diff hist +76 SeqShop: Aligning Your Own Genome, June 2014 →Run your Alignment
- 02:02, 18 June 2014 diff hist +340 SeqShop: Aligning Your Own Genome, June 2014
- 01:37, 18 June 2014 diff hist +332 SeqShop: Aligning Your Own Genome, June 2014 →Screen
- 01:33, 18 June 2014 diff hist +1,266 SeqShop: Aligning Your Own Genome, June 2014 →Create your GotCloud Configuration File
- 01:29, 18 June 2014 diff hist 0 File:Gc2xconf.png Mktrost uploaded a new version of "File:Gc2xconf.png" current
- 01:14, 18 June 2014 diff hist 0 N File:Screen.png current
- 01:10, 18 June 2014 diff hist +982 SeqShop: Aligning Your Own Genome, June 2014 →Copy to Text File
- 01:05, 18 June 2014 diff hist 0 File:Gc2xconf.png Mktrost uploaded a new version of "File:Gc2xconf.png"
- 01:03, 18 June 2014 diff hist 0 N File:Gc2xconf.png
- 00:41, 18 June 2014 diff hist -7 SeqShop: Aligning Your Own Genome, June 2014 →Header Row
- 00:39, 18 June 2014 diff hist +161 SeqShop: Aligning Your Own Genome, June 2014 →Generating the index file listing your FASTQs
- 00:15, 18 June 2014 diff hist -1 SeqShop: Aligning Your Own Genome, June 2014 →PLATFORM =
- 00:11, 18 June 2014 diff hist 0 File:Analysis of SV.pdf Mktrost uploaded a new version of "File:Analysis of SV.pdf" current
- 23:54, 17 June 2014 diff hist +5,345 SeqShop: Aligning Your Own Genome, June 2014
- 23:46, 17 June 2014 diff hist 0 N File:HdrSheetDone.png current
- 23:43, 17 June 2014 diff hist 0 File:HdrSheetRGannotated.png Mktrost uploaded a new version of "File:HdrSheetRGannotated.png" current
- 23:39, 17 June 2014 diff hist 0 N File:HdrSheetRGannotated.png
- 23:16, 17 June 2014 diff hist 0 N File:HdrSheetFQ2 2.png current
- 23:13, 17 June 2014 diff hist 0 N File:HdrSheetFQ2 1.png current
- 23:08, 17 June 2014 diff hist 0 N File:HdrSheetMN1.png current
- 23:06, 17 June 2014 diff hist 0 N File:HdrSheetFQ1.png current
- 23:05, 17 June 2014 diff hist 0 N File:HighlightedFASTQs.png current
- 22:54, 17 June 2014 diff hist 0 N File:FastqHdrMN.png current
- 22:51, 17 June 2014 diff hist 0 N File:HdrRow.png current
- 22:36, 17 June 2014 diff hist 0 N File:FastqlistAnnotated.png current
- 22:12, 17 June 2014 diff hist 0 N File:Fastqlist.png current
- 21:56, 17 June 2014 diff hist 0 N File:RunDir.png current
- 21:42, 17 June 2014 diff hist +1,011 N Screen Commands Created page with "Use screen to save a session so that your commands continue to run even when you log off. You really only need to use the top 3 commands. The rest are "advanced" usage. {| ..."
- 21:39, 17 June 2014 diff hist +73 Introduction to new students →Unix current
- 21:29, 17 June 2014 diff hist +27 N SeqShop: Aligning Your Own Genome, June 2014 Created page with "== Goals of This Session =="
- 21:26, 17 June 2014 diff hist +132 SeqShop: June 2014
- 21:25, 17 June 2014 diff hist 0 N File:Analysis of SV.pdf
- 15:21, 17 June 2014 diff hist +68 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
- 15:19, 17 June 2014 diff hist 0 File:Variant Calling and Filtering for INDELs.pdf Mktrost uploaded a new version of "File:Variant Calling and Filtering for INDELs.pdf"
- 14:09, 17 June 2014 diff hist +284 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:03, 17 June 2014 diff hist 0 N File:Variant Calling and Filtering for INDELs.pdf
- 14:01, 17 June 2014 diff hist -51 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Normalization
- 14:00, 17 June 2014 diff hist 0 N File:IndelNormalize.png
- 13:52, 17 June 2014 diff hist +359 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Normalization
- 11:38, 17 June 2014 diff hist 0 N File:SnpcallPipeline.jpg current
- 10:48, 17 June 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Improvements
- 10:47, 17 June 2014 diff hist +1,203 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →diff
- 10:37, 17 June 2014 diff hist +207 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 10:33, 17 June 2014 diff hist +46 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Comparison with other data sets
- 09:51, 17 June 2014 diff hist +29 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Comparison with other data sets
- 21:50, 16 June 2014 diff hist +14,843 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Examining GotCloud indel Ouptut
- 21:28, 16 June 2014 diff hist +1,469 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
- 21:27, 16 June 2014 diff hist 0 N File:IndelOutFinal.png current
- 21:17, 16 June 2014 diff hist 0 N File:IndelOut.png
- 21:06, 16 June 2014 diff hist 0 File:IndelStart.png Mktrost uploaded a new version of "File:IndelStart.png" current
- 21:04, 16 June 2014 diff hist 0 N File:IndelStart.png
- 20:56, 16 June 2014 diff hist +290 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Examining GotCloud Indel Input files
- 20:37, 16 June 2014 diff hist 0 File:SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud snpcall.pdf"
- 20:35, 16 June 2014 diff hist 0 File:SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud snpcall.pdf"
- 20:26, 16 June 2014 diff hist +218 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Genotype Refinement Input
- 20:24, 16 June 2014 diff hist 0 N File:ThunderConf.png current
- 20:20, 16 June 2014 diff hist -11 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Filtering Summary Statistics
- 20:19, 16 June 2014 diff hist +20 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Examining GotCloud SnpCall Input files
- 20:17, 16 June 2014 diff hist 0 File:SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud snpcall.pdf"
- 20:16, 16 June 2014 diff hist 0 File:SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud snpcall.pdf"
- 19:58, 16 June 2014 diff hist 0 File:Bamindex.png Mktrost uploaded a new version of "File:Bamindex.png" current
- 19:57, 16 June 2014 diff hist 0 File:Bamindex.png Mktrost uploaded a new version of "File:Bamindex.png"
- 19:44, 16 June 2014 diff hist +41 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Reference Files
- 19:42, 16 June 2014 diff hist +370 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Reference Files
- 19:23, 16 June 2014 diff hist +1 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 →Running GotCloud Indel
- 19:20, 16 June 2014 diff hist +120 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
- 15:29, 16 June 2014 diff hist +141 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Logging Off
- 14:27, 16 June 2014 diff hist +15 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud Configuration File
- 12:11, 16 June 2014 diff hist 0 N File:CSG-SeqShop-UNIX-Intro-Presentation.pdf current
- 11:25, 16 June 2014 diff hist 0 N File:Sequence Analysis Workshop-Risks viewing genetic information.pdf current
- 09:25, 16 June 2014 diff hist -5 SeqShop: June 2014
- 09:25, 16 June 2014 diff hist +40 SeqShop: June 2014
- 09:24, 16 June 2014 diff hist -286 SeqShop: June 2014
- 09:19, 16 June 2014 diff hist 0 N File:Mapping and assembly.pdf
- 00:43, 16 June 2014 diff hist 0 File:SeqShop - GotCloud Align.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud Align.pdf"
- 23:33, 15 June 2014 diff hist -4 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →GotCloud BAM Index File
- 22:00, 15 June 2014 diff hist 0 File:SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud snpcall.pdf"
- 22:00, 15 June 2014 diff hist 0 File:SeqShop - GotCloud Align.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud Align.pdf"
- 21:56, 15 June 2014 diff hist +179 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →BAM Files
- 21:55, 15 June 2014 diff hist 0 N File:BamRec.png current
- 21:47, 15 June 2014 diff hist -6 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud FASTQ Index File
- 21:44, 15 June 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Accessing BAMs by Position
- 21:32, 15 June 2014 diff hist 0 File:FqindexRG.png Mktrost uploaded a new version of "File:FqindexRG.png"
- 21:28, 15 June 2014 diff hist +228 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud FASTQ Index File
- 21:10, 15 June 2014 diff hist +159 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Sequnce Alignment Files: BAM Files
- 21:06, 15 June 2014 diff hist 0 File:SeqShop - GotCloud Align.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud Align.pdf"
- 20:41, 15 June 2014 diff hist 0 File:Fqindex.png Mktrost uploaded a new version of "File:Fqindex.png"
- 16:24, 15 June 2014 diff hist +267 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Genotype Refinement Output
- 16:23, 15 June 2014 diff hist +1,277 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Genotype Refinement Output
- 16:10, 15 June 2014 diff hist 0 File:SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud snpcall.pdf"
- 15:52, 15 June 2014 diff hist +119 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 15:51, 15 June 2014 diff hist -2 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Introduction
- 15:50, 15 June 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Introduction
- 15:50, 15 June 2014 diff hist 0 N File:SeqShop - GotCloud snpcall.pdf
- 14:23, 15 June 2014 diff hist +519 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →BAM Files
- 14:17, 15 June 2014 diff hist +25 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Accessing BAMs by Position
- 14:16, 15 June 2014 diff hist +1,374 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →BAM Files
- 14:15, 15 June 2014 diff hist 0 N File:Tview.png current
- 13:47, 15 June 2014 diff hist -82 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Genotype Refinement Output
- 13:40, 15 June 2014 diff hist +4 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Run GotCloud Align
- 13:40, 15 June 2014 diff hist +4 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Setup your run environment
- 13:39, 15 June 2014 diff hist +8 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining GotCloud Align Input Files
- 13:37, 15 June 2014 diff hist 0 File:SeqShop - GotCloud Align.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud Align.pdf"
- 13:16, 15 June 2014 diff hist +12 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Comparing the refined genotypes to the unrefined genotypes
- 13:15, 15 June 2014 diff hist +70 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Genotype Refinement Output
- 13:14, 15 June 2014 diff hist +1,458 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →GotCloud Genotype Refinement
- 12:54, 15 June 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Filtered VCF
- 12:53, 15 June 2014 diff hist +1 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Passing SNPs
- 12:39, 15 June 2014 diff hist +1,241 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Examining GotCloud SnpCall Output
- 12:29, 15 June 2014 diff hist 0 N File:SvmFiltGL.png current
- 12:17, 15 June 2014 diff hist +466 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Filtered VCF
- 12:13, 15 June 2014 diff hist -12 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining Raw Sequence Reads : FASTQs
- 12:11, 15 June 2014 diff hist +41 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Filtered VCF
- 12:09, 15 June 2014 diff hist +30 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Filtered VCF
- 12:02, 15 June 2014 diff hist 0 File:SvmFilt.png Mktrost uploaded a new version of "File:SvmFilt.png" current
- 12:00, 15 June 2014 diff hist +1,456 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Examining GotCloud SnpCall Output
- 11:58, 15 June 2014 diff hist 0 N File:SvmFilt.png
- 11:45, 15 June 2014 diff hist 0 N File:SplitOut.png
- 11:45, 15 June 2014 diff hist 0 N File:Vcfsout.png
- 11:00, 15 June 2014 diff hist +264 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Examining GotCloud SnpCall Output
- 10:58, 15 June 2014 diff hist 0 N File:GcsnpcallOut.png
- 10:31, 15 June 2014 diff hist +10 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →GotCloud BAM Index File
- 02:54, 15 June 2014 diff hist 0 File:SeqShop - GotCloud Align.pdf Mktrost uploaded a new version of "File:SeqShop - GotCloud Align.pdf"
- 02:15, 15 June 2014 diff hist -18 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →GotCloud Genotype Refinement
- 01:52, 15 June 2014 diff hist -4 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Filtering Summary Statistics
- 01:48, 15 June 2014 diff hist 0 File:SnpcallDiagram.png Mktrost uploaded a new version of "File:SnpcallDiagram.png" current
- 01:28, 15 June 2014 diff hist +1 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →GotCloud Configuration File
- 01:28, 15 June 2014 diff hist +213 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →GotCloud Configuration File
- 01:24, 15 June 2014 diff hist +23 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →GotCloud Configuration File
- 01:17, 15 June 2014 diff hist +434 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Run GotCloud SnpCall
- 01:12, 15 June 2014 diff hist 0 N File:SnpcallStart.png current
- 01:02, 15 June 2014 diff hist +255 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Examining GotCloud SnpCall Input files
- 00:51, 15 June 2014 diff hist +233 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Sequnce Alignment Files: BAM Files
- 00:47, 15 June 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →GotCloud Configuration File
- 00:46, 15 June 2014 diff hist +252 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →GotCloud Configuration File
- 00:21, 15 June 2014 diff hist +1,837 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Examining GotCloud SnpCall Input files
- 00:19, 15 June 2014 diff hist 0 N File:Bamindex2.png current
- 00:15, 15 June 2014 diff hist 0 N File:BamindexConf.png current
- 00:07, 15 June 2014 diff hist 0 N File:Bamindex1.png current
- 23:53, 14 June 2014 diff hist 0 N File:Bamindex.png
- 23:30, 14 June 2014 diff hist +35 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 23:29, 14 June 2014 diff hist 0 N File:SeqShop - GotCloud Align.pdf
- 23:25, 14 June 2014 diff hist -9 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Run GotCloud SnpCall
- 23:25, 14 June 2014 diff hist -34 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 23:23, 14 June 2014 diff hist +922 N SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 Created page with "== Goals of This Session == * What we want to learn ** How to generate variant calls for INDELs from BAMs ** How to examine the variants at particular genomic positions *..."
- 23:20, 14 June 2014 diff hist +101 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Setup your run environment
- 23:19, 14 June 2014 diff hist 0 File:Setup.png Mktrost uploaded a new version of "File:Setup.png"
- 23:10, 14 June 2014 diff hist -326 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Setup your run environment
- 23:09, 14 June 2014 diff hist +10 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Goals of This Session
- 23:09, 14 June 2014 diff hist -35 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Goals of This Session
- 23:06, 14 June 2014 diff hist 0 File:GcalignOutBAMm.png Mktrost uploaded a new version of "File:GcalignOutBAMm.png" current
- 23:04, 14 June 2014 diff hist 0 File:GcalignOutQCm.png Mktrost uploaded a new version of "File:GcalignOutQCm.png" current
- 23:02, 14 June 2014 diff hist 0 File:GcalignOutM.png Mktrost uploaded a new version of "File:GcalignOutM.png" current
- 23:00, 14 June 2014 diff hist +150 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →QC Metrics
- 22:59, 14 June 2014 diff hist +127 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →BAM Files
- 22:57, 14 June 2014 diff hist +30 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →BAM Files
- 22:44, 14 June 2014 diff hist +27 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud Configuration File
- 22:42, 14 June 2014 diff hist +18 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud Configuration File
- 22:41, 14 June 2014 diff hist +417 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 22:35, 14 June 2014 diff hist +67 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud FASTQ Index File
- 22:35, 14 June 2014 diff hist +67 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Reference Files
- 22:34, 14 June 2014 diff hist +78 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining Raw Sequence Reads : FASTQs
- 22:29, 14 June 2014 diff hist -912 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 21:31, 14 June 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining GotCloud Align Output
- 21:29, 14 June 2014 diff hist +427 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →QC Metrics
- 21:28, 14 June 2014 diff hist 0 N File:Qplotpdfwg.png current
- 21:27, 14 June 2014 diff hist 0 N File:Qplotpdf.png current
- 21:27, 14 June 2014 diff hist 0 N File:Qplots.png current
- 21:04, 14 June 2014 diff hist -181 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Sample Contamination/Swap
- 20:55, 14 June 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →BAM Files
- 20:55, 14 June 2014 diff hist 0 File:GcConf.png Mktrost uploaded a new version of "File:GcConf.png"
- 20:54, 14 June 2014 diff hist +205 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →BAM Files
- 20:53, 14 June 2014 diff hist 0 N File:Bam.png
- 20:53, 14 June 2014 diff hist 0 File:GcConf.png Mktrost uploaded a new version of "File:GcConf.png": Reverted to version as of 00:11, 15 June 2014
- 20:53, 14 June 2014 diff hist 0 File:GcConf.png Mktrost uploaded a new version of "File:GcConf.png"
- 20:27, 14 June 2014 diff hist -64 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining GotCloud Align Output
- 20:22, 14 June 2014 diff hist +23 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Run GotCloud Align
- 20:18, 14 June 2014 diff hist -1,113 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud Configuration File
- 20:11, 14 June 2014 diff hist 0 N File:GcConf.png
- 19:03, 14 June 2014 diff hist -1,821 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud FASTQ Index File
- 19:00, 14 June 2014 diff hist 0 N File:FqindexRG.png
- 18:52, 14 June 2014 diff hist 0 N File:Fqindex.png
- 18:09, 14 June 2014 diff hist -14 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 18:09, 14 June 2014 diff hist +407 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Reference Files
- 18:06, 14 June 2014 diff hist 0 N File:Fasta.png current
- 17:44, 14 June 2014 diff hist 0 File:RefDir.png Mktrost uploaded a new version of "File:RefDir.png"
- 17:42, 14 June 2014 diff hist -7 GotCloud: Genetic Reference and Resource Files →Generating BWA Reference Files
- 17:42, 14 June 2014 diff hist -23 GotCloud: Genetic Reference and Resource Files →Generating BWA Reference Files
- 17:03, 14 June 2014 diff hist +27 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining Raw Sequence Reads
- 17:02, 14 June 2014 diff hist +199 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining Raw Sequence Reads
- 16:56, 14 June 2014 diff hist 0 N File:Fastq.png current
- 16:53, 14 June 2014 diff hist +369 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining Raw Sequence Reads
- 16:52, 14 June 2014 diff hist 0 N File:Fastq3.png current
- 16:04, 14 June 2014 diff hist 0 N File:Fastqsm.png current
- 15:53, 14 June 2014 diff hist +268 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Step 0: Setup environment
- 15:51, 14 June 2014 diff hist 0 N File:Setup.png
- 14:06, 14 June 2014 diff hist +82 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 13:42, 14 June 2014 diff hist -12 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Why GotCloud?
- 11:39, 14 June 2014 diff hist +6 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Step 0: Setup environment
- 11:32, 14 June 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 →Goals of This Session
- 11:31, 14 June 2014 diff hist +2,774 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 11:26, 14 June 2014 diff hist 0 N File:FilterSum.png current
- 10:56, 14 June 2014 diff hist 0 File:SnpcallDiagram.png Mktrost uploaded a new version of "File:SnpcallDiagram.png"
- 10:46, 14 June 2014 diff hist 0 N File:SnpcallDiagram.png
- 10:31, 14 June 2014 diff hist 0 File:AlignDiagram.png Mktrost uploaded a new version of "File:AlignDiagram.png"
- 02:19, 14 June 2014 diff hist +112 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 00:09, 14 June 2014 diff hist -930 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 00:08, 14 June 2014 diff hist -6 Template:SeqShopLogin
- 00:07, 14 June 2014 diff hist +840 Template:SeqShopLogin
- 23:13, 13 June 2014 diff hist +112 N SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 Created page with " seqshop/gotcloud/gotcloud snpcall --conf seqshop/inputs/gotcloud.conf --numjobs 2 --region 22:36000000-37000000"
- 22:56, 13 June 2014 diff hist +990 N Template:SeqShopLogin Created page with "== Step 0: Login to the machine & setup environment== <ol> <li> Login to the windows machine * The username/password for the Windows machine should be written on the right-ha..."
- 15:47, 13 June 2014 diff hist +631 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Step 0: Login to the machine & setup environment
- 15:47, 13 June 2014 diff hist 0 N File:SeqshopX11.png current
- 15:46, 13 June 2014 diff hist 0 N File:Seqshop.png current
- 15:37, 13 June 2014 diff hist 0 N File:PuttyS.png current
- 15:35, 13 June 2014 diff hist 0 N File:Xming.png current
- 11:43, 13 June 2014 diff hist +48 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining Raw Sequence Reads
- 11:21, 13 June 2014 diff hist +864 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining GotCloud Align Output
- 10:45, 13 June 2014 diff hist 0 N File:Contam1.png
- 10:39, 13 June 2014 diff hist +189 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining GotCloud Align Output
- 10:33, 13 June 2014 diff hist +1,272 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 10:29, 13 June 2014 diff hist 0 File:BAM.png Mktrost uploaded a new version of "File:BAM.png" current
- 10:23, 13 June 2014 diff hist 0 File:BAM.png Mktrost uploaded a new version of "File:BAM.png"
- 10:21, 13 June 2014 diff hist 0 N File:BAM.png
- 22:17, 12 June 2014 diff hist +241 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud FASTQ Index File
- 22:00, 12 June 2014 diff hist +248 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Why GotCloud?
- 21:57, 12 June 2014 diff hist +37 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Reference Files
- 21:50, 12 June 2014 diff hist +30 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining GotCloud Align Input Files
- 21:49, 12 June 2014 diff hist +53 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining Raw Sequence Reads
- 21:28, 12 June 2014 diff hist +588 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud Alignment Pipeline
- 21:12, 12 June 2014 diff hist +6 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud Alignment Pipeline
- 21:12, 12 June 2014 diff hist 0 File:AlignDiagram.png Mktrost uploaded a new version of "File:AlignDiagram.png"
- 20:58, 12 June 2014 diff hist +709 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 15:24, 12 June 2014 diff hist +259 Nm User talk:Santy.8128 Welcome! current
- 15:24, 12 June 2014 diff hist +544 Nm User:Santy.8128 Creating user page for new user. current
- 17:30, 11 June 2014 diff hist +307 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Examining GotCloud Align Output
- 17:16, 11 June 2014 diff hist 0 N File:GcalignOutBAMm.png
- 17:08, 11 June 2014 diff hist 0 N File:GcalignOutQCm.png
- 16:55, 11 June 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Run GotCloud Align
- 16:54, 11 June 2014 diff hist 0 File:GcalignStart.png Mktrost uploaded a new version of "File:GcalignStart.png" current
- 16:53, 11 June 2014 diff hist 0 File:GcalignStart.png Mktrost uploaded a new version of "File:GcalignStart.png"
- 16:51, 11 June 2014 diff hist 0 File:GcalignStart.png Mktrost uploaded a new version of "File:GcalignStart.png"
- 16:48, 11 June 2014 diff hist +90 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Run GotCloud Align
- 16:30, 11 June 2014 diff hist -1 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Run GotCloud Align
- 16:30, 11 June 2014 diff hist +646 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 16:29, 11 June 2014 diff hist 0 N File:GcalignOutM.png
- 16:05, 11 June 2014 diff hist 0 N File:GcalignStart.png
- 15:59, 11 June 2014 diff hist +797 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 15:40, 11 June 2014 diff hist +1 GotCloud: Variant Calling Pipeline →Reference Files
- 15:00, 11 June 2014 diff hist 0 N File:Align index.png current
- 13:56, 11 June 2014 diff hist +99 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Reference Files
- 13:54, 11 June 2014 diff hist 0 File:RefDir.png Mktrost uploaded a new version of "File:RefDir.png"
- 13:50, 11 June 2014 diff hist +55 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Sequence Data Files : FASTQs
- 13:49, 11 June 2014 diff hist -969 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 13:44, 11 June 2014 diff hist 0 File:RefDir.png Mktrost uploaded a new version of "File:RefDir.png"
- 13:35, 11 June 2014 diff hist 0 File:RefDir.png Mktrost uploaded a new version of "File:RefDir.png"
- 13:34, 11 June 2014 diff hist 0 N File:RefDir.png
- 11:59, 11 June 2014 diff hist +1,658 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 11:04, 11 June 2014 diff hist +1,490 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Reference Files
- 10:54, 11 June 2014 diff hist 0 N File:Fasta3 (copy).png current
- 10:54, 11 June 2014 diff hist 0 N File:Fasta3.png current
- 16:37, 10 June 2014 diff hist +371 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →GotCloud FASTQ Index File
- 11:43, 10 June 2014 diff hist -132 Introduction to new students →Programming
- 22:33, 9 June 2014 diff hist +2,660 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 21:51, 9 June 2014 diff hist 0 N File:FASTQ.png current
- 21:20, 9 June 2014 diff hist 0 File:AlignDiagram.png Mktrost uploaded a new version of "File:AlignDiagram.png"
- 21:14, 9 June 2014 diff hist 0 N File:AlignDiagram.png
- 20:36, 9 June 2014 diff hist +372 SeqShop: June 2014
- 20:35, 9 June 2014 diff hist +2 SeqShop: Sequence Mapping and Assembly Practical, June 2014 →Step 1: setup Environment
- 20:34, 9 June 2014 diff hist 0 Short Workshops
- 17:37, 9 June 2014 diff hist +1,092 N SeqShop: Sequence Mapping and Assembly Practical, June 2014 Created page with "== Step 0: Login to the machine == # Login to the windows machine #* The username/password for the Windows machine should be written on it # Open putty #* Start->..... # In p..."
- 15:57, 9 June 2014 diff hist +27 Short Workshops
- 15:56, 9 June 2014 diff hist -420 SeqShop: June 2014
- 15:56, 9 June 2014 diff hist +33 SeqShop: June 2014
- 15:56, 9 June 2014 diff hist +1,407 N SeqShop: June 2014 Created page with "Sequence Analysis Workshop June 16-20, 2014 {| class="wikitable" cellpadding=5 |- ! style="background:#ABE" | Topic !! style="background:#ABE" | Lecture !! style="background:..."
- 14:58, 9 June 2014 diff hist +47 Short Workshops →Low Pass Whole Genomes
- 11:44, 4 June 2014 diff hist +15 Abecasis Lab →Current Members
- 11:44, 4 June 2014 diff hist 0 N File:BenLerch crop.jpg current
- 11:43, 4 June 2014 diff hist 0 N File:SaraRashkin crop.jpg current
- 11:43, 4 June 2014 diff hist 0 N File:TomBlackwell crop.jpg current
- 11:32, 4 June 2014 diff hist +222 Abecasis Lab →Current Members
- 11:31, 4 June 2014 diff hist +8 Abecasis Lab →Research Fellows
- 11:31, 4 June 2014 diff hist 0 N File:LarsFritsche crop.jpg current
- 11:30, 4 June 2014 diff hist +66 Abecasis Lab →Research Fellows
- 11:29, 4 June 2014 diff hist 0 N File:Kuser.png current
- 12:14, 30 May 2014 diff hist -9 Abecasis Lab
- 12:11, 30 May 2014 diff hist -9 Main Page
- 12:09, 30 May 2014 diff hist 0 N File:Abecasis2014Retreat.JPG current
- 12:05, 30 May 2014 diff hist +68 Abecasis Lab →Staff
- 12:04, 30 May 2014 diff hist 0 N File:Laura Head.jpg current
- 11:47, 30 May 2014 diff hist +2 Abecasis Lab →Staff
- 11:46, 30 May 2014 diff hist +59 Abecasis Lab →Research Fellows
- 11:43, 30 May 2014 diff hist +117 Abecasis Lab
- 11:25, 30 May 2014 diff hist +207 Abecasis Lab →Staff
- 08:36, 19 May 2014 diff hist +258 Nm User talk:Slowkow Welcome! current
- 08:36, 19 May 2014 diff hist +464 Nm User:Slowkow Creating user page for new user. current
- 17:48, 15 May 2014 diff hist -71 GotCloud: Alignment Pipeline
- 17:44, 15 May 2014 diff hist +324 GotCloud: Alignment Pipeline →Running the GotCloud Alignment Pipeline
- 17:41, 15 May 2014 diff hist +113 GotCloud: Alignment Pipeline →Running the GotCloud Alignment Pipeline
- 17:38, 15 May 2014 diff hist +91 GotCloud: Alignment Pipeline
- 17:37, 15 May 2014 diff hist +105 GotCloud →Sequence Analysis Background Information
- 17:34, 15 May 2014 diff hist +15 GotCloud: Source Releases current
- 17:34, 15 May 2014 diff hist -1 GotCloud: FAQs →GotCloud Frequently Asked Questions (FAQs)
- 10:47, 14 May 2014 diff hist +81 BamUtil →Full Release (includes libStatGen)
- 10:46, 14 May 2014 diff hist 0 N File:BamUtilLibStatGen.1.0.12.tar.gz current
- 10:46, 14 May 2014 diff hist 0 N File:BamUtil.1.0.12.tgz current
- 10:45, 14 May 2014 diff hist +861 BamUtil →Releases
- 10:00, 14 May 2014 diff hist 0 N File:LibStatGen.1.0.12.tgz current
- 09:59, 14 May 2014 diff hist +446 LibStatGen Download →Official Releases
- 08:48, 23 April 2014 diff hist +260 Nm User talk:Magarwal Welcome! current
- 08:48, 23 April 2014 diff hist +540 Nm User:Magarwal Creating user page for new user. current
- 10:16, 28 March 2014 diff hist +23 RAREMETAL FAQ
- 11:58, 26 March 2014 diff hist +250 BamUtil: squeeze current
- 15:34, 25 March 2014 diff hist -105 Template:Ground Transportation current
- 15:26, 25 March 2014 diff hist +3 Template:Ground Transportation
- 15:18, 25 March 2014 diff hist +2 Template:Ann Arbor Hotels current
- 15:17, 25 March 2014 diff hist +2 Template:Air Transportation current
- 15:16, 25 March 2014 diff hist -1 Ann Arbor Travel Basics current
- 15:16, 25 March 2014 diff hist +7 Ann Arbor Travel Basics
- 09:49, 25 March 2014 diff hist +1,261 BamUtil: FAQ
- 09:39, 25 March 2014 diff hist +72 BamUtil →Getting Help
- 09:40, 24 March 2014 diff hist +260 Nm User talk:Scottcr Welcome! current
- 09:40, 24 March 2014 diff hist +619 Nm User:Scottcr Creating user page for new user. current
- 09:10, 21 March 2014 diff hist +260 Nm User talk:Jjandshi Welcome! current
- 09:10, 21 March 2014 diff hist +705 Nm User:Jjandshi Creating user page for new user. current
- 09:10, 21 March 2014 diff hist +260 Nm User talk:David.chengyu Welcome! current
- 09:10, 21 March 2014 diff hist +3,857 Nm User:David.chengyu Creating user page for new user. current
- 17:31, 28 February 2014 diff hist +71 BamUtil →Release of just BamUtil (does not include libStatGen)
- 17:21, 28 February 2014 diff hist 0 BamUtil →Release of just BamUtil (does not include libStatGen)
- 17:21, 28 February 2014 diff hist 0 N File:BamUtilLibStatGen.1.0.11.tar.gz current
- 17:20, 28 February 2014 diff hist +405 BamUtil →Full Release (includes libStatGen)
- 17:19, 28 February 2014 diff hist 0 N File:BamUtil.1.0.11.tgz current
- 17:18, 28 February 2014 diff hist +828 BamUtil →Release of just BamUtil (does not include libStatGen)
- 16:55, 28 February 2014 diff hist -3 LibStatGen Download
- 16:54, 28 February 2014 diff hist 0 N File:LibStatGen.1.0.11.tgz current
- 16:53, 28 February 2014 diff hist +693 LibStatGen Download
- 10:01, 27 February 2014 diff hist +263 Nm User talk:Wfly2004 2007 Welcome! current
- 14:58, 17 February 2014 diff hist +8 Template:PhoneHomeParameters current
- 14:57, 17 February 2014 diff hist +11 Template:PhoneHomeParameters
- 11:30, 17 February 2014 diff hist +167 VerifyBamID →Command Line Options
- 11:24, 17 February 2014 diff hist +9 RAREMETALWORKER →Software Options
- 11:24, 17 February 2014 diff hist +24 Template:PhoneHomeParameters
- 11:22, 17 February 2014 diff hist +85 Template:PhoneHomeParameters
- 11:19, 17 February 2014 diff hist +73 Template:PhoneHomeParameters
- 11:10, 17 February 2014 diff hist +12 RAREMETALWORKER →Software Options
- 10:07, 14 February 2014 diff hist +69 UMAKE
- 13:32, 13 February 2014 diff hist +1,204 VerifyBamID
- 13:06, 29 January 2014 diff hist +156 Abecasis Lab
- 11:26, 27 January 2014 diff hist +65 GotCloud: Genetic Reference and Resource Files
- 12:03, 24 January 2014 diff hist -123 GotCloud: Alignment Pipeline
- 13:37, 17 January 2014 diff hist +31 GotCloud: Versions →Version 1.12 (Full Release on 1/17/2014)
- 13:37, 17 January 2014 diff hist +1,838 GotCloud: Versions
- 09:55, 14 January 2014 diff hist +262 Nm User talk:Wpgilks Welcome! current
- 09:54, 14 January 2014 diff hist +511 Nm User:Wpgilks Creating user page for new user. current
- 12:35, 10 January 2014 diff hist -7 Tutorial: GotCloud current
- 11:48, 7 January 2014 diff hist +200 GotCloud →GotCloud Dependencies
- 19:01, 6 January 2014 diff hist +1,614 N BamUtil: explainFlags Created page with "explainFlags Category:BAM Software Category:Software = Overview of the <code>explainFlags</code> function of <code>bamUtil</code> = The <code>exp..." current
- 18:48, 6 January 2014 diff hist 0 BamUtil: bam2FastQ →Output Files
- 18:47, 6 January 2014 diff hist +1,825 BamUtil: bam2FastQ
- 18:07, 6 January 2014 diff hist +653 BamUtil: readReference current
- 18:01, 6 January 2014 diff hist +21 BamUtil: dumpIndex →Optional Parameters current
- 18:00, 6 January 2014 diff hist +517 BamUtil: dumpIndex
- 17:55, 6 January 2014 diff hist -1 Template:PhoneHomeParameters
- 17:54, 6 January 2014 diff hist +304 BamUtil: dumpRefInfo current
- 17:48, 6 January 2014 diff hist +529 BamUtil: readIndexedBam current
- 17:46, 6 January 2014 diff hist +221 Template:BamIndex current
- 17:00, 6 January 2014 diff hist -4 BamUtil: diff →Optional Parmaeters current
- 16:58, 6 January 2014 diff hist -1,664 BamUtil: trimBam →Required Parameters
- 16:56, 6 January 2014 diff hist +329 Template:OutBAMOutputFile current
- 16:53, 6 January 2014 diff hist +11 Template:InBAMInputFile
- 16:50, 6 January 2014 diff hist -809 BamUtil: dumpHeader current
- 16:49, 6 January 2014 diff hist +264 Template:InBAMInputFile
- 16:26, 6 January 2014 diff hist +1,269 BamUtil: dumpHeader
- 16:25, 6 January 2014 diff hist +6 Template:PhoneHomeParameters
- 16:25, 6 January 2014 diff hist -1,927 Template:PhoneHomeParameters
- 16:24, 6 January 2014 diff hist +2,095 N PhoneHome Created page with "= Phone Home Description = PhoneHome means a program will check and report to the user if a new version is available. The program will also send a completion status back to t..." current
- 16:02, 6 January 2014 diff hist +17 BamUtil: gapInfo →Return Value
- 16:02, 6 January 2014 diff hist +7 BamUtil: gapInfo →Optional Parameters for --detailed
- 16:01, 6 January 2014 diff hist +597 BamUtil: gapInfo
- 15:55, 6 January 2014 diff hist +2,552 BamUtil: stats
- 14:08, 6 January 2014 diff hist +23 BamUtil: clipOverlap
- 14:07, 6 January 2014 diff hist +23 BamUtil: filter current
- 14:07, 6 January 2014 diff hist +23 BamUtil: revert current
- 14:07, 6 January 2014 diff hist +23 BamUtil: squeeze
- 14:07, 6 January 2014 diff hist +23 BamUtil: trimBam
- 14:06, 6 January 2014 diff hist +23 BamUtil: mergeBam current
- 14:06, 6 January 2014 diff hist +49 BamUtil: polishBam current
- 14:05, 6 January 2014 diff hist +23 BamUtil: dedup
- 14:05, 6 January 2014 diff hist +23 BamUtil: recab
- 14:05, 6 January 2014 diff hist +23 BamUtil: validate current
- 14:04, 6 January 2014 diff hist +23 BamUtil: diff
- 14:03, 6 January 2014 diff hist +166 BamUtil: diff
- 13:59, 6 January 2014 diff hist +1,368 BamUtil: validate
- 13:39, 6 January 2014 diff hist +1,242 BamUtil: recab
- 13:29, 6 January 2014 diff hist +641 BamUtil: dedup
- 13:17, 6 January 2014 diff hist +2,042 BamUtil: polishBam
- 12:47, 6 January 2014 diff hist +1,735 BamUtil: mergeBam
- 12:30, 6 January 2014 diff hist +90 BamUtil: writeRegion current
- 12:28, 6 January 2014 diff hist +45 BamUtil: clipOverlap
- 12:25, 6 January 2014 diff hist +1 BamUtil: trimBam →Optional parameters
- 12:24, 6 January 2014 diff hist +3,385 BamUtil: trimBam
- 11:40, 6 January 2014 diff hist +2,646 BamUtil: squeeze
- 10:38, 6 January 2014 diff hist +1,309 BamUtil: revert
- 10:29, 6 January 2014 diff hist +1,014 BamUtil: filter
- 09:57, 6 January 2014 diff hist +34 BamUtil: clipOverlap →Return Value
- 09:56, 6 January 2014 diff hist +785 BamUtil: clipOverlap
- 09:54, 6 January 2014 diff hist -3 BamUtil: writeRegion →Skip an Records with any of the Specified Flags (--excludeFlags)
- 18:28, 3 January 2014 diff hist +53 BamUtil: splitBam current
- 18:27, 3 January 2014 diff hist +20 BamUtil: convert →Return Value current
- 18:27, 3 January 2014 diff hist +35 BamUtil: findCigars →Return Value current
- 18:26, 3 January 2014 diff hist +855 BamUtil: findCigars
- 18:19, 3 January 2014 diff hist -8 BamUtil: writeRegion
- 18:15, 3 January 2014 diff hist -16 BamUtil: writeRegion
- 18:15, 3 January 2014 diff hist +764 BamUtil: splitBam
- 18:07, 3 January 2014 diff hist +27 BamUtil: writeRegion
- 17:43, 3 January 2014 diff hist +58 BamUtil: splitChromosome current
- 17:42, 3 January 2014 diff hist +56 BamUtil: convert
- 17:39, 3 January 2014 diff hist +28 BamUtil: dumpAsp current
- 17:39, 3 January 2014 diff hist +28 BamUtil: dumpAsp
- 17:38, 3 January 2014 diff hist +58 BamUtil: asp current
- 17:37, 3 January 2014 diff hist +21 Template:RefFile current
- 17:36, 3 January 2014 diff hist +2 Template:ParamsParameter current
- 17:36, 3 January 2014 diff hist +2 Template:OutBAMOutputFile
- 17:36, 3 January 2014 diff hist +2 Template:NoeofBGZFParameter current
- 17:36, 3 January 2014 diff hist +2 Template:InBAMInputFile
- 17:35, 3 January 2014 diff hist +2 Template:BamIndex
- 17:32, 3 January 2014 diff hist +451 BamUtil: writeRegion →Optional Parameters For Other Operations
- 17:29, 3 January 2014 diff hist +407 BamUtil: writeRegion
- 17:27, 3 January 2014 diff hist +58 Template:PhoneHomeParameters
- 17:26, 3 January 2014 diff hist +19 Template:ParamsParameter
- 17:26, 3 January 2014 diff hist +20 Template:OutBAMOutputFile
- 17:26, 3 January 2014 diff hist +19 Template:NoeofBGZFParameter
- 17:25, 3 January 2014 diff hist +19 Template:InBAMInputFile
- 17:25, 3 January 2014 diff hist +3 Template:BamIndex
- 17:15, 3 January 2014 diff hist +16 Template:BamIndex
- 16:58, 3 January 2014 diff hist +637 BamUtil: splitChromosome
- 16:45, 3 January 2014 diff hist -125 BamUtil: convert →Parameters
- 16:45, 3 January 2014 diff hist +161 N Template:PhoneHomeParamDesc Created page with "<pre> PhoneHome: --noPhoneHome : disable PhoneHome (default enabled) --phoneHomeThinning : adjust the PhoneHome thinning parameter (default 50) </pre>" current
- 16:42, 3 January 2014 diff hist -13 BamUtil: convert →Parameters
- 16:41, 3 January 2014 diff hist -1 BamUtil: convert →Parameters
- 16:41, 3 January 2014 diff hist -22 BamUtil: convert →Parameters
- 16:41, 3 January 2014 diff hist +183 BamUtil: convert →Parameters
- 16:36, 3 January 2014 diff hist -3 Template:PhoneHomeParameters
- 16:36, 3 January 2014 diff hist -6 Template:PhoneHomeParameters →PhoneHome Parameters
- 16:32, 3 January 2014 diff hist -10 Template:PhoneHomeParameters →PhoneHome Parameters
- 16:27, 3 January 2014 diff hist +23 BamUtil: writeRegion
- 16:27, 3 January 2014 diff hist -1 Template:PhoneHomeParameters
- 16:26, 3 January 2014 diff hist -30 BamUtil: convert
- 16:25, 3 January 2014 diff hist +2,808 N Template:PhoneHomeParameters Created page with "== PhoneHome Parameters == Phoning Home means a program will check and report to the user if a new version is available. The program will also send a completion status back t..."
- 15:06, 3 January 2014 diff hist +14 BamUtil: convert →Return Value
- 14:24, 3 January 2014 diff hist -20 Template:BamUtilPrograms
- 14:23, 3 January 2014 diff hist -2,951 BamUtil →Programs
- 14:21, 3 January 2014 diff hist -44 Template:BamUtilPrograms
- 14:18, 3 January 2014 diff hist -2,744 Software →BAM Util Tools
- 13:41, 3 January 2014 diff hist +3,695 N Template:BamUtilPrograms Created page with " The following tools are part of the BamUtil program which is built using libStatGen. Running <code>bin/bam</code> with no parameters ..."
- 19:22, 2 January 2014 diff hist +1,944 BamUtil →Releases
- 16:58, 2 January 2014 diff hist +1,566 LibStatGen Download version 1.0.10
- 16:38, 2 January 2014 diff hist 0 N File:BamUtilLibStatGen.1.0.10.tar.gz current
- 16:38, 2 January 2014 diff hist 0 N File:BamUtil.1.0.10.tar.gz current
- 16:37, 2 January 2014 diff hist 0 N File:LibStatGen.1.0.10.tar.gz current
- 10:17, 11 December 2013 diff hist +263 Nm User talk:Well Welcome! current
- 10:17, 11 December 2013 diff hist +386 Nm User:Well Creating user page for new user. current
- 11:51, 31 October 2013 diff hist +254 N Ann Arbor Travel Basics Created page with "= Travel Basics= This page contains some basic information about traveling to/from Ann Arbor & the University of Michigan. =Traveling To/From Ann Arbor= {{Air Transportation..."
- 11:38, 31 October 2013 diff hist +25 Template:Ground Transportation
- 11:36, 31 October 2013 diff hist +480 N Template:Ann Arbor Hotels Created page with "==Hotels In Ann Arbor== [http://www.campusinn.com/ Campus Inn] 734-769-2200 or 1-800-666-8693 :616 East Huron St., Ann Arbor, MI 48109 [http://www.belltowerhotel.com/ Bell..."
- 11:27, 31 October 2013 diff hist +1,577 N Template:Ground Transportation Created page with "==Ground Transportation== [https://www.metrocars.com/michigan/reservations/index.asp Metro Cars] 734-946-5700 or 1-800-456-1701 :$60 one way from DTW to AA. Book online and ..."
- 11:26, 31 October 2013 diff hist +49 Template:Air Transportation
- 11:26, 31 October 2013 diff hist +11 Template:Air Transportation
- 11:25, 31 October 2013 diff hist +348 N Template:Air Transportation Created page with "==Air Transportation== Closest airport to Ann Arbor: [http://www.metroairport.com/ Detroit Metro Airport] (DTW) * about 30 minute drive to/from Ann Arbor Some tools for bro..."
- 08:05, 31 October 2013 diff hist +958 Git FAQs
- 12:54, 15 October 2013 diff hist +262 Nm User talk:Samliu Welcome! current
- 12:54, 15 October 2013 diff hist +353 Nm User:Samliu Creating user page for new user. current
- 12:52, 15 October 2013 diff hist +262 Nm User talk:Cedlund Welcome! current
- 12:52, 15 October 2013 diff hist +438 Nm User:Cedlund Creating user page for new user. current
- 14:30, 10 October 2013 diff hist +289 UMAKE
- 14:24, 10 October 2013 diff hist +39 GotCloud: Amazon
- 14:22, 10 October 2013 diff hist +610 N GotCloud: Amazon Created page with "Instructions for running on Amazon are coming soon... # First you will need to setup an Amazon Web Services account, see: https://aws.amazon.com/ # After your account is setu..."
- 14:05, 10 October 2013 diff hist +421 Mount S3 Volume current
- 13:57, 10 October 2013 diff hist +262 StarCluster