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- 1000 Genomes Project Pilot 1 SNP Calling
- 830 - BasicMapper::main()
- 830 - BestAlignment::ClearPositions()
- 830 - BestAlignment::EvaluateAlignment() (detailed comparison)
- 830 - BestAlignment::EvaluateAlignment() (main loop)
- 830 - BestAlignment::IterateCache()
- 830 - BestAlignment::MaqAlignment()
- 830 - BestAlignment::isNewPosition()
- 830 - Haplotyper::ConditionOnData()
- 830 - Haplotyper::ImputeGenotypes()
- 830 - Haplotyper::ImputeGenotypes() (edge)
- 830 - Haplotyper::ImputeGenotypes() (internal)
- 830 - Haplotyper::RandomSetup()
- 830 - Haplotyper::SampleChromosomes()
- 830 - Haplotyper::SampleHaplotypes()
- 830 - Haplotyper::SampleOneHaplotype()
- 830 - Haplotyper::ScoreLeftConditional()
- 830 - Haplotyper::ScoreLeftConditional() (smart, complicated)
- 830 - Haplotyper::SetupPrior()
- 830 - Haplotyper::SummarizeOptions()
- 830 - Haplotyper::Transpose()
- 830 - MINIMAC::main()
- 830 - MaqIndex::BuildIndex()
- 830 - MaqIndex::CompareToIndex()
- 830 - MaqIndex::GetWord()
- 830 - MaqIndex::LookupWord()
- 830 - MarkovModel::Condition()
- 830 - MarkovModel::CountErrors()
- 830 - MarkovModel::CountErrorsAndRecombinants()
- 830 - MarkovModel::CountRecombinants()
- 830 - MarkovModel::Impute()
- 830 - MarkovModel::Transpose()
- 830 - MarkovModel::WalkLeft()
- 830 - MarkovModel::WalkRight()
- Abecasis Group Awards
- An example of using libcsg
- Ancestry
- Ann Arbor Travel Basics
- BAFRegress
- BAM Review Action Items
- BamPileup
- Bam read count
- BaseQualityCheck
- Base Caller Summaries
- Basic Linux Intro
- Bayesdenovo
- Better X Sessions from Home (NX)
- Biostatistics 602: Main Page
- Biostatistics 666: Advanced Coalescent, Changing Population Size
- Biostatistics 666: Advanced Coalescent, Computation with the Coalescent
- Biostatistics 666: Advanced Haplotype Estimation
- Biostatistics 666: Analysis of Copy Number Using Sequence Data
- Biostatistics 666: Analysis of Low Pass Sequence Data
- Biostatistics 666: Applications of the Lander-Green Algorithm
- Biostatistics 666: Association Tests in Structured Populations
- Biostatistics 666: Contemporary Human Genetics
- Biostatistics 666: Copy Number Variation
- Biostatistics 666: Genotype Imputation
- Biostatistics 666: Haplotype Association Tests
- Biostatistics 666: Haplotype Estimation
- Biostatistics 666: Hardy-Weinberg Equilibrium
- Biostatistics 666: Introduction to De Novo Assembly
- Biostatistics 666: Introduction to the Coalescent
- Biostatistics 666: Introduction to the E-M Algorithm
- Biostatistics 666: Introductory Lecture
- Biostatistics 666: Likelihood Calculations for Large Pedigrees
- Biostatistics 666: Linkage Analysis in Sibling Pairs
- Biostatistics 666: Linkage Disequilibrium
- Biostatistics 666: Linkage Tests for Pairs of Individuals
- Biostatistics 666: Maximum Likelihood Allele Frequency Estimation
- Biostatistics 666: Modeling Recombination and Migration in the Coalescent
- Biostatistics 666: Modeling Variation in the Coalescent
- Biostatistics 666: Multipoint Analysis in Sibling Pairs
- Biostatistics 666: Rare Variant Burden Tests
- Biostatistics 666: Relationship Checking
- Biostatistics 666: The Lander-Green Algorithm
- Biostatistics 666: The Possible Triangle Constraint
- Biostatistics 666: Variance Component Analyses
- Biostatistics 666: Whole Genome Sequencing
- Biostatistics 815 Term Project
- C++ Class: InputFile
- C++ Class: Pedigree Example
- C++ Class Averages
- CHARGE
- CSG Tech Talks
- CalcMatch
- CheckVCF.py
- CigarRoller Proposed Update
- Code Sample: Generating Manhattan Plots in R
- Code Sample: Generating QQ Plots in R
- Dosage convertor
- Editing Sequence Analysis Practice 2011/03/10
- Evaluating a Read Mapper on Simulated Data
- Example
- Examples of Read Mapping with Karma and BWA
- ExomePicks
- FASTA
- FamRvTest tutorial
- Fst
- GREGOR