Difference between revisions of "SeqShop: December 2014"
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Workshop Schedule: [[Media:SeqShopScheduleDec2014.pdf|SeqShopScheduleDec2014.pdf]] | Workshop Schedule: [[Media:SeqShopScheduleDec2014.pdf|SeqShopScheduleDec2014.pdf]] | ||
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{| class="wikitable" cellpadding=5 | {| class="wikitable" cellpadding=5 | ||
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− | ! style="background:#ABE" | Monday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical | + | ! style="background:#ABE" | Monday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' |
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− | | [[Media: | + | | [[Media:2014.12_-_Workshop_Introduction.pdf|Brief Introduction and Background]] |
| [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Practical Intro]] | | [[Media:Dec2014 SeqShop - Linux.pdf|SeqShop: Practical Intro]] | ||
+ | |rowspan="3" | ''[[SeqShop: Aligning Your Own Genome, December 2014|SeqShop: Aligning Your Own Genome]]'' | ||
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− | | [[Media: | + | | [[Media:Sequencing symposium 2014.pptx|Design of Human Genetic Studies]] |
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− | | | + | | [[Media:Mapping and assemblyDec2014.pdf|Sequence Mapping and Assembly]] |
− | | [http://iobio.io Live experimentation with IOBIO] | + | | [[SeqShop: Sequence Mapping and Assembly Practical, December 2014|SeqShop: Sequence Mapping and Assembly Practical]] |
+ | [http://iobio.io Live experimentation with IOBIO] | ||
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− | + | ! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | |
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− | ! style="background:#ABE" | Tuesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical | ||
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− | | [[Media: | + | | [[Media:seqshop_dec14_day2_snp_lecture_v2.pdf|Variant Calling and Filtering for SNPs]] |
| [[SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014|SeqShop: Variant Calling and Filtering for SNPs Practical]] | | [[SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014|SeqShop: Variant Calling and Filtering for SNPs Practical]] | ||
+ | | rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]'' | ||
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− | | [[Media: | + | | [[Media:Variant Calling and Filtering for INDELs.pdf|Variant Calling and Filtering for INDELs]] |
| [[SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014|SeqShop: Variant Calling and Filtering for INDELs Practical]] | | [[SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014|SeqShop: Variant Calling and Filtering for INDELs Practical]] | ||
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− | ! style="background:#ABE" | Wednesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical | + | ! style="background:#ABE" | Wednesday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' |
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− | | [[Media: | + | | [[Media:Dec2014 Analysis of SV.pdf|Analysis of Structural Variation - Part 1]] |
− | [[Media: | + | [[Media:Dec2014 Analysis of SV part 2.pdf|Analysis of Structural Variation - Part 2]] |
| [[SeqShop: Analysis of Structural Variation Practical, December 2014|SeqShop: Analysis of Structural Variation Practical]] | | [[SeqShop: Analysis of Structural Variation Practical, December 2014|SeqShop: Analysis of Structural Variation Practical]] | ||
+ | |''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]'' | ||
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− | ! style="background:#ABE" | Thursday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical | + | ! style="background:#ABE" | Thursday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' |
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− | | [[Media: | + | | [[Media:DecWorshop2014-ancestry.pdf|Estimates of Genetic Ancestry]] |
− | | [[SeqShop: Estimates of Genetic Ancestry Practical, December 2014| SeqShop: Estimates of Genetic Ancestry Practical]] | + | |[[SeqShop: Estimates of Genetic Ancestry Practical, December 2014| SeqShop: Estimates of Genetic Ancestry Practical]] |
+ | | rowspan="2"|''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]'' | ||
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− | | [[Media: | + | | [[Media:Seqshop genetic association analysis 141211.pdf|Genetic Association Analysis]] |
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+ | |- | ||
+ | ! style="background:#ABE" | Friday !! style="background:#ABE" | Lecture !! style="background:#ABE" | Practical !! style="background:#ABE" | ''Own Genome Analysis'' | ||
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+ | |[[SeqShop: Genetic Association Analysis Practical, December 2014|SeqShop: Genetic Association Analysis Practical]] | ||
+ | |rowspan="2"|''[[SeqShop: Ancestry On Your Own Genome, December 2014|SeqShop: Ancestry On Your Own Genome]]'' | ||
+ | ''[[SeqShop: Calling Your Own Genome, December 2014|SeqShop: Calling Your Own Genome]]'' | ||
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− | | [[Media: | + | | [[Media:2014.12_-_Workshop_Closing.pdf|Example of a Whole Genome Association Study]] |
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|} | |} |
Latest revision as of 12:17, 18 December 2014
Sequence Analysis Workshop December 8-12, 2014: http://seqshop.sph.umich.edu/
Workshop Schedule: SeqShopScheduleDec2014.pdf