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Jump to navigationJump to search- 12:41, 5 April 2010 diff hist +604 METAL Quick Start →Describing the FUSION Input Files
- 12:40, 5 April 2010 diff hist +604 METAL Quick Start →Describing the DGI Input Files
- 12:30, 5 April 2010 diff hist +260 METAL Quick Start →Acknowledgements
- 12:28, 5 April 2010 diff hist +16 METAL Quick Start →Extracting Study by Study Results For Individual SNPs
- 12:27, 5 April 2010 diff hist +4,005 METAL Quick Start →Describing the SardiNIA Input Files
- 12:09, 5 April 2010 diff hist +12 METAL Quick Start →Describing the FUSION Input Files
- 12:08, 5 April 2010 diff hist +107 N Gzip File Created page with 'A file compressed with the venerable [http://www.gzip.org gzip] program by Mark Adler and Jean-loup Gailly.'
- 12:05, 5 April 2010 diff hist +8 METAL Quick Start →Describing the FUSION Input Files
- 12:04, 5 April 2010 diff hist +1,216 METAL Quick Start →Describing the FUSION Input Files
- 11:59, 5 April 2010 diff hist +187 METAL Quick Start →Describing the DGI Input Files
- 11:58, 5 April 2010 diff hist +204 METAL Quick Start →Describing the DGI Input Files
- 11:57, 5 April 2010 diff hist +23 METAL →Useful Wiki Pages
- 11:56, 5 April 2010 diff hist 0 METAL →Useful Wiki Pages
- 11:56, 5 April 2010 diff hist +63 METAL →Useful Wiki Pages
- 11:55, 5 April 2010 diff hist -1 Stouffer Method for Meta-Analysis →Original Reference current
- 11:55, 5 April 2010 diff hist +1,269 N Stouffer Method for Meta-Analysis Created page with 'This is a method for meta-analysis of data across studies that requires only a p-value, sample size and estimated direction of effect for each study. We rediscovered it when impl…'
- 11:49, 5 April 2010 diff hist 0 METAL Quick Start →Describing the DGI Input Files
- 11:47, 5 April 2010 diff hist +16 METAL Quick Start →Describing the DGI Input Files
- 11:47, 5 April 2010 diff hist +6 METAL Quick Start →Describing the DGI Input Files
- 11:46, 5 April 2010 diff hist +1,759 METAL Quick Start →The METAL Script
- 01:32, 2 April 2010 diff hist +21 Gene Ontology →External Link current
- 01:32, 2 April 2010 diff hist +1,205 N Gene Ontology Created page with ''''Gene Ontology''' is a structured annotation of genes that encodes information about their biological function. It is a useful aid when interpreting results of micro-array stud…'
- 00:52, 1 April 2010 diff hist +367 N Biostatistics 666: The Lander-Green Algorithm Created page with '== Objective == This lecture introduces the Lander-Green algorithm as an extension of the algorithms for sibling pair analysis that we have described earlier in the course. == …' current
- 00:50, 1 April 2010 diff hist +38 N File:666.18.pdf Introduces the Lander-Green algorithm. current
- 00:49, 1 April 2010 diff hist +14 MediaWiki:Sidebar
- 00:49, 1 April 2010 diff hist +42 N Biostatistics 666 Redirected page to Biostatistics 666: Main Page current
- 00:47, 1 April 2010 diff hist +39 MediaWiki:Sidebar
- 00:35, 1 April 2010 diff hist 0 File:666.17.pdf uploaded a new version of "File:666.17.pdf"
- 00:34, 1 April 2010 diff hist +78 Biostatistics 666: Main Page →Class Notes
- 18:35, 30 March 2010 diff hist +130 C++ Class: SamFile
- 18:31, 30 March 2010 diff hist +126 C++ Class: SamFile
- 17:52, 30 March 2010 diff hist +8,000 N C++ Class: SamFile Created page with '== Reading/Writing SAM/BAM Files In Your Program == === Reading/Writing Standard SAM/BAM Files === The '''SamFile''' class allows a user to easily read/write a SAM/BAM file. The…'
- 17:18, 30 March 2010 diff hist +21 LibStatGen: FASTQ
- 16:09, 30 March 2010 diff hist -2 METAL Quick Start →Running METAL
- 16:08, 30 March 2010 diff hist -32 METAL Quick Start →Running METAL
- 11:39, 30 March 2010 diff hist +7 GWAS current
- 11:39, 30 March 2010 diff hist +357 GWAS
- 11:37, 30 March 2010 diff hist +4 METAL Documentation →Genomic Control Correction
- 08:42, 30 March 2010 diff hist 0 Biostatistics 666: Main Page →Scheduling
- 07:33, 30 March 2010 diff hist +32 METAL Quick Start →Running METAL
- 07:32, 30 March 2010 diff hist -6 METAL Quick Start →Running METAL
- 07:31, 30 March 2010 diff hist +441 METAL Quick Start →Running METAL
- 07:28, 30 March 2010 diff hist +48 METAL Quick Start →Running METAL
- 07:27, 30 March 2010 diff hist +685 METAL Quick Start →Running METAL
- 07:22, 30 March 2010 diff hist +787 METAL Quick Start →The METAL Script
- 07:14, 30 March 2010 diff hist +1,825 N METAL Glucose Example Script Created page with '<source lang="text"> # This file includes a series of comments. Each comment is marked # by a # character as the first character in the line. # # This is a comment! # Meta-anal…' current
- 07:05, 30 March 2010 diff hist +271 METAL Quick Start
- 07:02, 30 March 2010 diff hist +481 METAL Quick Start →Input Files
- 06:59, 30 March 2010 diff hist +39 METAL Quick Start →Input Files
- 06:58, 30 March 2010 diff hist +906 METAL Quick Start
- 06:43, 30 March 2010 diff hist +294 METAL Quick Start →The Glucose Data
- 06:40, 30 March 2010 diff hist +1 METAL Quick Start →Learning by Example
- 06:40, 30 March 2010 diff hist +841 N METAL Quick Start Created page with '== Learning by Example == Many people find that it easiest to learn by example. So, if reading through our ''extensive'' [METAL Documentation|documentation] is not for you, you …'
- 06:13, 30 March 2010 diff hist +218 METAL Documentation
- 06:08, 30 March 2010 diff hist +33 N Metal Documentation moved Metal Documentation to METAL Documentation current
- 06:08, 30 March 2010 diff hist 0 m METAL Documentation moved Metal Documentation to METAL Documentation
- 05:59, 30 March 2010 diff hist -3 Biostatistics 666: Relationship Checking →Recommended Reading current
- 05:59, 30 March 2010 diff hist +529 N Biostatistics 666: Relationship Checking Created page with '== Objective == Introduce the idea that checking genetic relationships is a critical part of genetic studies. Discuss different approaches for checking genetic relationships and…'
- 05:56, 30 March 2010 diff hist +131 N File:666.17.pdf Describes approaches for multipoint analysis in different relative pairs. Describes approaches for checking genetic relationships.
- 05:55, 30 March 2010 diff hist +73 Biostatistics 666: Main Page →Class Notes
- 11:13, 25 March 2010 diff hist +2 METAL Documentation →Advanced Analysis Options
- 11:13, 25 March 2010 diff hist -1 METAL Documentation →Advanced Analysis Options
- 11:11, 25 March 2010 diff hist +11 METAL Documentation →Usage instructions
- 11:10, 25 March 2010 diff hist -29 METAL Documentation →Analyze Heterogeneity
- 11:10, 25 March 2010 diff hist +8 METAL Documentation →Filtering
- 11:09, 25 March 2010 diff hist +223 METAL Documentation →Filtering
- 11:08, 25 March 2010 diff hist +33 METAL Documentation
- 11:06, 25 March 2010 diff hist +333 METAL Documentation →Performing the Final Analysis
- 11:05, 25 March 2010 diff hist -552 METAL Documentation →Filtering
- 11:04, 25 March 2010 diff hist +664 METAL Documentation →Input File Columns
- 11:01, 25 March 2010 diff hist -418 METAL Documentation →Verbose Mode
- 10:57, 25 March 2010 diff hist -2 METAL Documentation →Example: A METAL Meta-Analysis Script
- 10:57, 25 March 2010 diff hist +7 METAL Documentation →Example text file to run metal;
- 10:56, 25 March 2010 diff hist +6 METAL Documentation
- 10:55, 25 March 2010 diff hist -325 METAL Documentation
- 10:46, 25 March 2010 diff hist +514 METAL Documentation →Input Files
- 10:44, 25 March 2010 diff hist -361 METAL Documentation →Input File Recommendations
- 10:29, 25 March 2010 diff hist +1,511 METAL Documentation
- 03:17, 25 March 2010 diff hist +312 METAL Documentation
- 03:06, 25 March 2010 diff hist +97 METAL Documentation →Authors
- 03:04, 25 March 2010 diff hist +1,674 METAL Documentation →Usage instructions
- 02:42, 25 March 2010 diff hist +1,089 METAL Documentation
- 02:26, 25 March 2010 diff hist +37 N Metal Command Reference moved Metal Command Reference to METAL Command Reference current
- 02:26, 25 March 2010 diff hist 0 m METAL Command Reference moved Metal Command Reference to METAL Command Reference
- 02:26, 25 March 2010 diff hist +26 METAL →Useful Wiki Pages
- 02:25, 25 March 2010 diff hist +4 METAL →Useful Wiki Pages
- 02:23, 25 March 2010 diff hist +489 N METAL Created page with 'METAL is a program that facilitates the meta-analysis of genomewide association scans. == Useful Wiki Pages == There are a few pages in this Wiki that may be useful to METAL us…'
- 02:21, 25 March 2010 diff hist +2 METAL FAQ
- 02:20, 25 March 2010 diff hist -8 METAL FAQ
- 02:19, 25 March 2010 diff hist +24 METAL FAQ
- 02:18, 25 March 2010 diff hist +960 N METAL FAQ Created page with 'This is the Frequently Asked Questions page for the [METAL Program] ;# Metal checks whether the direction of effect is positive or negative when combining information across sam…'
- 13:01, 24 March 2010 diff hist +133 GlfSingle
- 12:24, 24 March 2010 diff hist -7 GlfSingle →Command Line Options
- 11:04, 24 March 2010 diff hist +67 Biostatistics 666: Main Page →Scheduling
- 11:01, 24 March 2010 diff hist +324 Biostatistics 666: Main Page
- 19:39, 23 March 2010 diff hist +165 FASTA current
- 19:37, 23 March 2010 diff hist -2 FASTA →Example
- 19:37, 23 March 2010 diff hist +680 N FASTA Created page with 'A simple text format for storing DNA sequences. A FASTA file can store one or more DNA sequences. Each record in a FASTA file begins with a > character (which must be the fir…'
- 19:33, 23 March 2010 diff hist +2 Biostatistics 666: Multipoint Analysis in Sibling Pairs →Slides current
- 19:33, 23 March 2010 diff hist +154 N Biostatistics 666: Multipoint Analysis in Sibling Pairs Created page with '== Outline == This lecture introduces the principles behind multipoint analysis of sibling pairs. == Slides == [Media:666.16.pdf|Slides in PDF Format]'
- 16:18, 23 March 2010 diff hist +133 N Merlin Created page with 'A program for linkage and association analysis in human pedigrees. See [http://www.sph.umich.edu/csg/abecasis/Merlin/ Merlin Website]'
- 16:17, 23 March 2010 diff hist +449 N Phred scale Created page with 'A scale commonly used to measure data quality and error rates in sequence analysis. It was popularized by Phil Green's PHRED base-calling software. It is defined as: <math> …' current
- 12:42, 23 March 2010 diff hist 0 MediaWiki:Sidebar
- 12:42, 23 March 2010 diff hist +11 MediaWiki:Sidebar
- 12:42, 23 March 2010 diff hist +2 MediaWiki:Sidebar
- 12:41, 23 March 2010 diff hist +30 MediaWiki:Sidebar
- 12:38, 23 March 2010 diff hist +17 Abecasis Lab →Staff
- 10:28, 23 March 2010 diff hist +122 Abecasis Lab →Former Research Fellows
- 10:25, 23 March 2010 diff hist +450 Abecasis Lab →Former Research Fellows
- 10:16, 23 March 2010 diff hist +698 Abecasis Lab →Former Doctoral Students
- 10:09, 23 March 2010 diff hist +188 Abecasis Lab →Former Doctoral Students
- 10:08, 23 March 2010 diff hist +27 Abecasis Lab →Former Doctoral Students
- 07:43, 23 March 2010 diff hist +382 N Biostatistics 666: The Possible Triangle Constraint Created page with '== Content == Show how simple genetic models can be used to predict similarity between relative pairs and IBD sharing among sibling pairs. Introduce the possible triangle constr…' current
- 07:15, 23 March 2010 diff hist +1 Biostatistics 666: Linkage Tests for Pairs of Individuals →Recommended Reading
- 07:15, 23 March 2010 diff hist -132 Biostatistics 666: Linkage Tests for Pairs of Individuals →Recommended Reading
- 07:15, 23 March 2010 diff hist +648 N Biostatistics 666: Linkage Tests for Pairs of Individuals Created page with '== Overview == This lecture introduces simple linkage tests in the context of affected sibling pairs. One test, originally described by Bishop and Williamson (1990) focuses on i…'
- 07:11, 23 March 2010 diff hist +172 Biostatistics 666: Main Page →Class Notes
- 07:09, 23 March 2010 diff hist +64 N File:666.16.pdf Introduces multipoint analysis, in the context of sibling pairs.
- 07:09, 23 March 2010 diff hist +135 N File:666.15.pdf Shows how a simple disease model can be used to predict IBD probabilities for relative pairs. Introduces possible triangle constraint. current
- 07:17, 18 March 2010 diff hist +31 N MapabilityScores moved MapabilityScores to MappabilityScores current
- 07:17, 18 March 2010 diff hist 0 m MappabilityScores moved MapabilityScores to MappabilityScores current
- 07:17, 18 March 2010 diff hist 0 N File:666.14.pdf current
- 07:17, 18 March 2010 diff hist +90 Biostatistics 666: Main Page →Class Notes
- 04:37, 11 March 2010 diff hist -7 LocusZoom →Generate single plots using our publicly-available lipids GWAS data
- 04:35, 11 March 2010 diff hist -66 LocusZoom
- 04:28, 11 March 2010 diff hist -13 LocusZoom →Upload your own meta-analysis file and generate single plots using a web-based form
- 05:39, 8 March 2010 diff hist 0 ExomePicks →Download
- 04:09, 4 March 2010 diff hist +96 ExomePicks
- 04:07, 4 March 2010 diff hist 0 ExomePicks →Download
- 09:45, 3 March 2010 diff hist -1 ExomePicks →Download
- 09:45, 3 March 2010 diff hist +1 ExomePicks →Download
- 09:44, 3 March 2010 diff hist +9 ExomePicks →Download
- 09:44, 3 March 2010 diff hist +3,009 ExomePicks
- 09:28, 3 March 2010 diff hist +11 ExomePicks →Input Files
- 09:28, 3 March 2010 diff hist +2,420 N ExomePicks Created page with ''''ExomePicks''' is a program that suggests individuals to be sequenced in a large pedigree. '''ExomePicks''' assumes that a genotyping chip or another cost effective means will …'
- 03:00, 22 February 2010 diff hist +913 N Biostatistics 666: Association Tests in Structured Populations Created page with ' == Overview == This lecture introduces the problem of population stratification in the context of genetic association studies. It also discusses three possible strategies for h…'
- 02:56, 22 February 2010 diff hist +234 N File:666.13.pdf Introduces the problem of population stratification in the context of an association study. Discusses three possible solutions: a) Family based association tests. b) The genomic control method. c) Genotype based matching approaches.
- 02:54, 22 February 2010 diff hist +95 Biostatistics 666: Main Page →Class Notes
- 16:52, 19 February 2010 diff hist +1,228 N Outcomes For Mapping A Paired End Created page with '== Basics == Paired end reads have an expected relative orientation (for example, FR are expected to map to opposite strands of the genome) and distance (for example, 500 bp +/-…' current
- 08:20, 18 February 2010 diff hist +12 Biostatistics 666: Main Page →Course History
- 08:19, 18 February 2010 diff hist +940 N Biostatistics 666: Haplotype Association Tests Created page with '== Objective == This page introduces the idea of haplotype association tests. It includes a discussion of when haplotype association tests might be preferable to single marker a…'
- 08:15, 18 February 2010 diff hist +39 N File:666.12.pdf Introduces Haplotype Association Tests.
- 08:15, 18 February 2010 diff hist +79 Biostatistics 666: Main Page →Class Notes
- 02:42, 17 February 2010 diff hist -738 1000 Genomes Project Pilot 1 SNP Calling
- 02:40, 17 February 2010 diff hist -191 1000 Genomes Project Pilot 1 SNP Calling
- 17:45, 16 February 2010 diff hist -3 1000 Genomes Project Pilot 1 SNP Calling
- 23:01, 15 February 2010 diff hist -1 Biostatistics 666: Advanced Coalescent, Computation with the Coalescent →Guest Lecturer current
- 23:00, 15 February 2010 diff hist -1 Biostatistics 666: Advanced Coalescent, Changing Population Size →Guest Lecturer current
- 22:59, 15 February 2010 diff hist 0 File:666.10.pdf uploaded a new version of "File:666.10.pdf": Introduction to E-M Algorithm in Genetics. This version fixes reference to Excoffier and Slatkin paper.
- 22:58, 15 February 2010 diff hist 0 File:666.09.pdf uploaded a new version of "File:666.09.pdf": Fixed reference to Excoffier paper.
- 22:53, 15 February 2010 diff hist +42 N File:666.11.pdf Haplotyping Algorithms. February 16, 2010
- 22:48, 15 February 2010 diff hist +754 N Biostatistics 666: Haplotype Estimation Created page with '== Objective == This lecture introduces several strategies for estimating individual haplotypes and their frequencies. At heart, all population-based haplotyping algorithms look…'
- 22:42, 15 February 2010 diff hist +221 Biostatistics 666: Introduction to the E-M Algorithm
- 22:40, 15 February 2010 diff hist +72 Biostatistics 666: Main Page →Class Notes
- 09:46, 11 February 2010 diff hist 0 N File:666.10.pdf
- 06:15, 11 February 2010 diff hist +283 N Biostatistics 666: Introduction to the E-M Algorithm Created page with '== Objective == Introduce the E-M algorithm in genetics == Slides == Slide in PDF Format == Recommended Reading == Slatkin M, Excoffier L (1996) �Test…'
- 01:26, 11 February 2010 diff hist +4 Biostatistics 666: Advanced Coalescent, Changing Population Size
- 01:26, 11 February 2010 diff hist -387 Biostatistics 666: Advanced Coalescent, Computation with the Coalescent →Recommended Reading
- 01:25, 11 February 2010 diff hist +317 Biostatistics 666: Advanced Coalescent, Computation with the Coalescent
- 01:24, 11 February 2010 diff hist +642 N Biostatistics 666: Advanced Coalescent, Computation with the Coalescent Created page with '== Objective == == Slides == Slides in PDF format == Recommended Reading == Richard R. Hudson (1990) Gene genealogies and the coalescent process ''in'' O…'
- 01:23, 11 February 2010 diff hist -4 Biostatistics 666: Advanced Coalescent, Changing Population Size →Objectives
- 01:22, 11 February 2010 diff hist +6 Biostatistics 666: Advanced Coalescent, Changing Population Size →Notes
- 01:22, 11 February 2010 diff hist -1 Biostatistics 666: Advanced Coalescent, Changing Population Size →Guest Lecturer =
- 01:21, 11 February 2010 diff hist +334 N Biostatistics 666: Advanced Coalescent, Changing Population Size Created page with '== Guest Lecturer === This will be a guest lecture by Sebastian Zoellner, who is our department's resident expert on the coalescent.s == Objectives == Provide an introduction …'
- 01:19, 11 February 2010 diff hist +286 Biostatistics 666: Main Page →Class Notes
- 01:17, 11 February 2010 diff hist +123 N File:666.08.pdf Advanced guest lecture by Sebastian Zoellner. Focused on computation methods related to the coalescent. February 4, 2010. current
- 01:16, 11 February 2010 diff hist +156 N File:666.07.pdf Advanced lecture on the coalescent by guest lecturer, Sebastian Zoellner. Focused on coalescent modeling with changing population sizes. February 2, 2009. current
- 12:01, 9 February 2010 diff hist 0 File:666.09.pdf uploaded a new version of "File:666.09.pdf": Fixed minor typos. February 9, 2010
- 04:59, 9 February 2010 diff hist +6 Biostatistics 666: Modeling Variation in the Coalescent →Slides
- 04:58, 9 February 2010 diff hist 0 Biostatistics 666: Modeling Variation in the Coalescent →Slides
- 04:58, 9 February 2010 diff hist +6 Biostatistics 666: Modeling Recombination and Migration in the Coalescent →Slides
- 04:57, 9 February 2010 diff hist +6 Biostatistics 666: Maximum Likelihood Allele Frequency Estimation →Slides
- 04:57, 9 February 2010 diff hist 0 Biostatistics 666: Maximum Likelihood Allele Frequency Estimation →Slides
- 04:57, 9 February 2010 diff hist +712 N Biostatistics 666: Maximum Likelihood Allele Frequency Estimation Created page with '== Objective == This lecture examines maximum likelihood based estimation of allele frequencies in several simple settings, such as estimation of allele frequencies from samples…'
- 04:49, 9 February 2010 diff hist +189 N File:666.09.pdf This lecture reviews maximum likelihood estimation and applies maximum likelihood concepts to derive estimates of allele frequency in several simple settings. Last update February 9, 2010.
- 04:48, 9 February 2010 diff hist +1 Biostatistics 666: Main Page →Class Notes
- 04:48, 9 February 2010 diff hist +97 Biostatistics 666: Main Page →Class Notes
- 15:53, 2 February 2010 diff hist -60 MediaWiki:Sidebar
- 15:52, 2 February 2010 diff hist +31 MediaWiki:Sidebar
- 15:51, 2 February 2010 diff hist 0 MediaWiki:Sidebar
- 15:50, 2 February 2010 diff hist +242 N MediaWiki:Sidebar Created page with '* navigation ** mainpage|mainpage-description ** portal-url|portal ** currentevents-url|currentevents ** recentchanges-url|recentchanges ** randompage-url|randompage ** helppage|…'
- 15:28, 2 February 2010 diff hist +31 Evaluating a Read Mapper on Simulated Data
- 15:17, 2 February 2010 diff hist +128 Evaluating a Read Mapper on Simulated Data →Grouping
- 15:05, 2 February 2010 diff hist +1,393 N Evaluating a Read Mapper on Simulated Data Created page with '== Grouping == When evaluating read mappers, we should always focus on well defined sets of reads: * Reads with no polymorphisms. * Reads with 1, 2, 3 or more SNPs. * Reads wit…'
- 13:06, 28 January 2010 diff hist 0 Links to Sequence Analysis Tools →Base Calling Tools
- 13:06, 28 January 2010 diff hist +796 Links to Sequence Analysis Tools
- 04:23, 28 January 2010 diff hist +60 N File:666.06.pdf Coalescent with Recombination or Migration January 26, 2010
- 03:05, 28 January 2010 diff hist -1 Biostatistics 666: Modeling Recombination and Migration in the Coalescent →Recommended Reading
- 02:46, 28 January 2010 diff hist +11 Biostatistics 666: Modeling Recombination and Migration in the Coalescent →Objective
- 02:45, 28 January 2010 diff hist +227 Biostatistics 666: Modeling Recombination and Migration in the Coalescent
- 02:44, 28 January 2010 diff hist +1 Biostatistics 666: Modeling Recombination and Migration in the Coalescent →Recommended Reading
- 02:43, 28 January 2010 diff hist +543 Biostatistics 666: Modeling Recombination and Migration in the Coalescent →Recommended Reading
- 02:37, 28 January 2010 diff hist +56 N Biostatistics 666: Modeling Recombination and Migration in the Coalescent Created page with '== Objective == == Slides == == Recommended Reading =='
- 02:36, 28 January 2010 diff hist +106 Biostatistics 666: Main Page →Class Notes
- 02:21, 26 January 2010 diff hist +215 Biostatistics 666: Modeling Variation in the Coalescent →Recommended Reading
- 02:20, 26 January 2010 diff hist +407 N Biostatistics 666: Modeling Variation in the Coalescent Created page with '== Objective == This class builds on previous descriptions of the coalescent. In the class we model the impact of mutations on the coalescent and use it to study: * What is the…'
- 02:15, 26 January 2010 diff hist +214 N File:666.05.pdf This lecture covers three concepts: * Estimating theta using sequence data as input. * Modeling frequency spectra using simulations * Analytically modeling the distribution of total variant count January 26, 2010
- 02:12, 26 January 2010 diff hist +88 Biostatistics 666: Main Page →Class Notes
- 11:36, 21 January 2010 diff hist +141 N Links to Sequence Analysis Tools Created page with ' http://www.broadinstitute.org/gsa/wiki/index.php/Base_quality_score_recalibration Quality Score Calibration Tool at the Broad Institute.'
- 11:35, 21 January 2010 diff hist +65 Main Page →Sequence Analysis Tools
- 11:31, 21 January 2010 diff hist +108 Main Page →Miscellaneous Utilities
- 11:29, 21 January 2010 diff hist +2 Read Mapping
- 11:28, 21 January 2010 diff hist +505 N Read Mapping Created page with '== Read mappers that we like are == [http://bio-bwa.sourceforge.net BWA] - A much faster aligner developed by Richard Durbin and Heng Li. Karma - Currently under development…'
- 11:23, 21 January 2010 diff hist +4 Main Page →Read Mapping
- 09:37, 21 January 2010 diff hist +49 N File:666.04.pdf Introduction to the Coalescent. January 21, 2010
- 04:23, 19 January 2010 diff hist 0 File:666.03.pdf uploaded a new version of "File:666.03.pdf": Introduction to Linkage Disequilibrium. Further tweaks as of January 19, 2010. The lecture is presently too long and should be split into two.
- 03:13, 19 January 2010 diff hist 0 File:666.03.pdf uploaded a new version of "File:666.03.pdf": Updated Lecture Notes, as of January 19, 2010.
- 01:44, 19 January 2010 diff hist +412 N Biostatistics 666: Introduction to the Coalescent Created page with '== Objective == Introduce the coalescent as a practical means to model the properties of alleles in a population. == Slides == Slides in PDF Format == Ba…'
- 01:37, 19 January 2010 diff hist +82 Biostatistics 666: Main Page →Class Notes
- 08:44, 14 January 2010 diff hist +95 N File:666.03.pdf Introduces Measures of Linkage Disequibrium and Related Concepts Last updated January 14, 2010
- 07:56, 14 January 2010 diff hist +311 Biostatistics 666: Linkage Disequilibrium →Objective
- 07:54, 14 January 2010 diff hist +840 N Biostatistics 666: Linkage Disequilibrium Created page with '== Objective == == Slides == Slides in PDF Format == Background Reading == Dawson E, Abecasis GR, Bumpstead S, Chen Y, Hunt S, Beare DM, Pabial J, Diblin…'
- 07:37, 14 January 2010 diff hist +74 Biostatistics 666: Main Page →Class Notes
- 10:55, 13 January 2010 diff hist +493 FastQValidator
- 10:52, 13 January 2010 diff hist 0 Main Page →Miscellaneous Utilities
- 10:52, 13 January 2010 diff hist +29 N FastQ validator moved FastQ validator to FastQ Validator current
- 10:52, 13 January 2010 diff hist 0 m FastQValidator moved FastQ validator to FastQ Validator
- 10:51, 13 January 2010 diff hist 0 Main Page →Miscellaneous Utilities
- 10:50, 13 January 2010 diff hist +108 Main Page →Sequence Analysis Tools
- 10:44, 13 January 2010 diff hist +44 FastQValidator
- 02:49, 12 January 2010 diff hist +22 Biostatistics 666: Hardy-Weinberg Equilibrium →Objective
- 02:49, 12 January 2010 diff hist +451 Biostatistics 666: Hardy-Weinberg Equilibrium
- 02:45, 12 January 2010 diff hist +19 Biostatistics 666: Hardy-Weinberg Equilibrium →Slides
- 02:44, 12 January 2010 diff hist +2 Biostatistics 666: Main Page →Class Notes
- 02:44, 12 January 2010 diff hist -1 Biostatistics 666: Main Page →Class Notes
- 02:44, 12 January 2010 diff hist -2 Biostatistics 666: Main Page →Class Notes
- 02:44, 12 January 2010 diff hist +28 Biostatistics 666: Main Page →Class Notes
- 02:43, 12 January 2010 diff hist +55 N File:666.02.pdf Lecture on Hardy Weinberg Equilibrium January 12, 2009
- 11:28, 7 January 2010 diff hist +6 Biostatistics 666: Main Page →Office Hours
- 10:05, 7 January 2010 diff hist +54 Biostatistics 666: Main Page
- 00:40, 7 January 2010 diff hist +27 Biostatistics 666: Main Page →Class Notes
- 00:38, 7 January 2010 diff hist +1 Biostatistics 666: Introductory Lecture →Slides
- 00:28, 7 January 2010 diff hist +42 Biostatistics 666: Introductory Lecture →Slides
- 00:26, 7 January 2010 diff hist +56 N File:666.01.pdf Biostatistics 666 Introductory Lecture as of 2010/01/06.
- 00:25, 7 January 2010 diff hist +899 Biostatistics 666: Main Page
- 23:54, 6 January 2010 diff hist +41 Biostatistics 666: Hardy-Weinberg Equilibrium
- 23:53, 6 January 2010 diff hist +300 N Biostatistics 666: Introductory Lecture Created page with '== Objective == This lecture introduces course objectives, which are to provide students with a working understanding of the techniques commonly used by statistical geneticists.…'
- 23:50, 6 January 2010 diff hist +195 N Biostatistics 666: Hardy-Weinberg Equilibrium Created page with '== Background Reading == Please read the following paper: Wigginton JE, Cutler DJ and Abecasis GR (2005). A note on exact tests of Hardy-Weinberg equilibrium. ''Am J Hum Genet'…'
- 23:48, 6 January 2010 diff hist +51 Biostatistics 666: Main Page →Class Notes
- 23:47, 6 January 2010 diff hist +42 N 666 Redirected page to Biostatistics 666: Main Page current
- 23:45, 6 January 2010 diff hist +397 Biostatistics 666: Main Page
- 23:42, 6 January 2010 diff hist +45 Biostatistics 666: Main Page →Class Notes
- 23:41, 6 January 2010 diff hist +765 N Biostatistics 666: Main Page Created page with '== Objective == Gene mapping studies aim to study the relationship between genetic variation and susceptibility to human disease. These studies can be used to elucidate the bioc…'
- 23:39, 6 January 2010 diff hist -28 Class Notes
- 23:35, 6 January 2010 diff hist +263 Class Notes
- 23:31, 6 January 2010 diff hist +15 Class Notes →BIOSTAT 666 Statistical and Numerical Methods in Human Genetics
- 23:31, 6 January 2010 diff hist +537 N Class Notes Created page with '== BIOSTAT 666 Statistical and Numerical Methods in Human Genetics == Gene mapping studies aim to study the relationship between genetic variation and suscepti…'
- 23:30, 6 January 2010 diff hist -576 Main Page →Learn Genetics
- 23:28, 6 January 2010 diff hist +743 Main Page
- 02:52, 19 December 2009 diff hist +34 SAM