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Jump to navigationJump to search- 01:31, 11 December 2017 diff hist 0 File:666.Worksheet 5.Solution.pdf Goncalo uploaded a new version of File:666.Worksheet 5.Solution.pdf current
- 10:16, 10 December 2017 diff hist +102 Biostatistics 666: Main Page →Problem Sets current
- 10:15, 10 December 2017 diff hist 0 N File:666.Worksheet 5.Solution.pdf
- 10:15, 10 December 2017 diff hist 0 N File:666.Worksheet 4.Solution.pdf current
- 03:57, 4 December 2017 diff hist +55 Biostatistics 666: Main Page →Sample Mid-Term
- 03:56, 4 December 2017 diff hist 0 N File:666.SampleMidterm02.pdf current
- 03:38, 4 December 2017 diff hist +19 Biostatistics 666: Introduction to De Novo Assembly →Slides current
- 03:37, 4 December 2017 diff hist -1 Biostatistics 666: Whole Genome Sequencing →Lecture Notes current
- 03:37, 4 December 2017 diff hist +18 Biostatistics 666: Main Page →Class Notes
- 03:35, 4 December 2017 diff hist 0 N File:666.2012.01 - De Novo Assembly.pdf current
- 03:34, 4 December 2017 diff hist 0 N File:666.2017.16 - Introduction to Sequencing.pdf current
- 09:28, 27 November 2017 diff hist +30 Biostatistics 666: Whole Genome Sequencing →Lecture Notes
- 09:28, 27 November 2017 diff hist +30 Biostatistics 666: Main Page →Class Notes
- 09:27, 27 November 2017 diff hist 0 N File:666.2017.16 - Introduction to Sequencing.pptx current
- 09:11, 20 November 2017 diff hist +45 Biostatistics 666: Main Page →Problem Sets
- 09:10, 20 November 2017 diff hist +22 Biostatistics 666: Genotype Imputation →Slides current
- 09:10, 20 November 2017 diff hist +22 Biostatistics 666: Main Page →Class Notes
- 09:09, 20 November 2017 diff hist 0 N File:666.2017.15 - Genotype Imputation.pdf current
- 09:08, 20 November 2017 diff hist 0 N File:666.Worksheet 5.pdf current
- 09:30, 15 November 2017 diff hist +25 Biostatistics 666: Linkage Analysis in Sibling Pairs →Slides current
- 09:30, 15 November 2017 diff hist +25 Biostatistics 666: Main Page →Class Notes
- 09:29, 15 November 2017 diff hist 0 N File:666.2017.14 - Affected Sibling Pairs.pdf current
- 09:38, 13 November 2017 diff hist +33 Biostatistics 666: Variance Component Analyses →Lecture Notes current
- 09:37, 13 November 2017 diff hist +33 Biostatistics 666: Main Page →Class Notes
- 09:36, 13 November 2017 diff hist 0 N File:666.2017.13 - Variance Component Models.pdf current
- 09:36, 13 November 2017 diff hist 0 File:666.2017.12 - Kinship Coefficients.pdf Goncalo uploaded a new version of File:666.2017.12 - Kinship Coefficients.pdf current
- 09:44, 8 November 2017 diff hist +112 Biostatistics 666: Main Page →Class Notes
- 09:43, 8 November 2017 diff hist 0 N File:666.2017.12 - Kinship Coefficients.pdf
- 08:59, 1 November 2017 diff hist 0 File:666.2010.01 - Power of Genomewide Studies.pdf Goncalo uploaded a new version of File:666.2010.01 - Power of Genomewide Studies.pdf current
- 04:28, 1 November 2017 diff hist +28 Biostatistics 666: Power of Genomewide Association Studies →Lecture Notes current
- 04:28, 1 November 2017 diff hist +34 Biostatistics 666: Main Page →Class Notes
- 04:27, 1 November 2017 diff hist 0 Biostatistics 666: Main Page →Class Notes
- 04:26, 1 November 2017 diff hist 0 N File:666.2010.01 - Power of Genomewide Studies.pdf
- 08:16, 23 October 2017 diff hist -9 Biostatistics 666: Advanced Haplotype Estimation →Slides current
- 08:15, 23 October 2017 diff hist +626 N Biostatistics 666: Advanced Haplotype Estimation Created page with "== Objective == This lecture introduces modern methods for haplotype estimation, which based on an idea introduced by Na Li and Matthew Stephens in 2003. This approach models..."
- 08:10, 23 October 2017 diff hist 0 N File:666.Worksheet 4.pdf current
- 08:10, 23 October 2017 diff hist +45 Biostatistics 666: Main Page →Problem Sets
- 08:04, 23 October 2017 diff hist +153 Biostatistics 666: Main Page →Problem Sets
- 08:03, 23 October 2017 diff hist 0 N File:666.Worksheet 3.Solution.pdf current
- 08:03, 23 October 2017 diff hist 0 N File:666.Worksheet 2.Solution.pdf current
- 08:02, 23 October 2017 diff hist 0 N File:666.Worksheet 1.Solution.pdf current
- 08:50, 11 October 2017 diff hist +109 Biostatistics 666: Main Page →Class Notes
- 08:49, 11 October 2017 diff hist 0 N File:666.2017.10 - Advanced Haplotyping.pdf current
- 08:37, 9 October 2017 diff hist +28 Biostatistics 666: Haplotype Estimation →Slides current
- 08:37, 9 October 2017 diff hist +6 Biostatistics 666: Main Page →Class Notes
- 08:36, 9 October 2017 diff hist +22 Biostatistics 666: Main Page →Class Notes
- 08:36, 9 October 2017 diff hist 0 N File:666.2017.09 - Haplotype Estimation.pdf current
- 15:53, 6 October 2017 diff hist +45 Biostatistics 666: Main Page →Problem Sets
- 02:42, 5 October 2017 diff hist +8 Biostatistics 666: Main Page →Course History
- 08:34, 4 October 2017 diff hist +1 Biostatistics 666: Main Page →Sample MidTerm
- 08:34, 4 October 2017 diff hist 0 Biostatistics 666: Main Page →Sample MidTerm
- 08:34, 4 October 2017 diff hist +71 Biostatistics 666: Main Page →Problem Sets
- 08:33, 4 October 2017 diff hist 0 N File:666.SampleMidterm.pdf current
- 07:12, 4 October 2017 diff hist +25 Biostatistics 666: Introduction to the E-M Algorithm →Slides current
- 07:11, 4 October 2017 diff hist +25 Biostatistics 666: Main Page →Class Notes
- 07:10, 4 October 2017 diff hist 0 N File:666.2017.08 - The E-M Algorithm.pdf current
- 07:08, 4 October 2017 diff hist 0 N File:666.Worksheet 3.pdf current
- 06:52, 2 October 2017 diff hist -134 Biostatistics 666: Maximum Likelihood Allele Frequency Estimation →Slides current
- 06:50, 2 October 2017 diff hist +37 Biostatistics 666: Main Page →Class Notes
- 06:48, 2 October 2017 diff hist 0 N File:666.2017.07 - Maximum Likelihood Estimation.pdf current
- 06:20, 2 October 2017 diff hist +46 Biostatistics 666: Modeling Recombination and Migration in the Coalescent →Slides current
- 08:26, 27 September 2017 diff hist +39 Biostatistics 666: Main Page →Class Notes
- 08:25, 27 September 2017 diff hist +45 Biostatistics 666: Main Page →Problem Sets
- 08:24, 27 September 2017 diff hist 0 N File:666.2017.06 - More Advanced Coalescent Models.pdf current
- 08:23, 27 September 2017 diff hist 0 File:666.Worksheet 2.pdf Goncalo uploaded a new version of File:666.Worksheet 2.pdf current
- 08:23, 27 September 2017 diff hist 0 N File:666.Worksheet 2.pdf
- 08:27, 25 September 2017 diff hist +36 Biostatistics 666: Main Page →Class Notes
- 08:26, 25 September 2017 diff hist +36 Biostatistics 666: Modeling Variation in the Coalescent →Slides current
- 08:25, 25 September 2017 diff hist 0 N File:666.2017.05 - Coalescent and Allele Counts.pdf current
- 09:06, 22 September 2017 diff hist +75 N Talk:Biostatistics 666: Main Page Started discussion page to track future ideas for class current
- 05:55, 18 September 2017 diff hist +17 Biostatistics 666: Introduction to the Coalescent →Slides current
- 05:54, 18 September 2017 diff hist +17 Biostatistics 666: Main Page →Class Notes
- 05:53, 18 September 2017 diff hist 0 N File:666.04 - The Coalescent.pdf current
- 07:58, 13 September 2017 diff hist +1 Biostatistics 666: Main Page →Problem Sets
- 07:58, 13 September 2017 diff hist +5 Biostatistics 666: Main Page →Problem Sets
- 07:58, 13 September 2017 diff hist -12 Biostatistics 666: Main Page →Problem Sets
- 07:57, 13 September 2017 diff hist 0 N File:666.Worksheet 1.pdf current
- 07:57, 13 September 2017 diff hist +71 Biostatistics 666: Main Page →Office Hours
- 07:54, 13 September 2017 diff hist -14 Biostatistics 666: Main Page →Office Hours
- 07:53, 13 September 2017 diff hist -39 Biostatistics 666: Linkage Disequilibrium →Slides current
- 07:53, 13 September 2017 diff hist +68 Biostatistics 666: Linkage Disequilibrium →Slides
- 07:53, 13 September 2017 diff hist +30 Biostatistics 666: Main Page →Class Notes
- 07:51, 13 September 2017 diff hist 0 N File:666.2017.03 - Linkage Disequilibrium.pdf current
- 09:46, 12 September 2017 diff hist -73 Biostatistics 666: Main Page →Scheduling
- 08:33, 11 September 2017 diff hist +52 Biostatistics 666: Main Page →Class Notes
- 08:32, 11 September 2017 diff hist +38 Biostatistics 666: Contemporary Human Genetics →Slides current
- 08:32, 11 September 2017 diff hist +38 Biostatistics 666: Main Page →Class Notes
- 08:32, 11 September 2017 diff hist 0 N File:666.2017.01 - Introductory Lecture.pdf current
- 08:30, 11 September 2017 diff hist +73 Biostatistics 666: Hardy-Weinberg Equilibrium →Slides current
- 08:29, 11 September 2017 diff hist +72 Biostatistics 666: Main Page →Older Lectures
- 08:29, 11 September 2017 diff hist -38 Biostatistics 666: Main Page →Class Notes
- 08:27, 11 September 2017 diff hist +950 N Biostatistics 666: Contemporary Human Genetics Created page with "== Objective == This lecture introduces course objectives, which are to provide students with a working understanding of the techniques commonly used by statistical geneticis..."
- 08:26, 11 September 2017 diff hist +69 Biostatistics 666: Main Page →Class Notes
- 08:23, 11 September 2017 diff hist +107 Biostatistics 666: Main Page →Older Lectures
- 08:23, 11 September 2017 diff hist +43 Biostatistics 666: Main Page →Class Notes
- 08:23, 11 September 2017 diff hist -150 Biostatistics 666: Main Page →Older Lectures
- 04:44, 11 September 2017 diff hist 0 N File:666.2017.02 - Hardy Weinberg Equilibrium.pdf current
- 02:47, 5 July 2017 diff hist 0 Abecasis Lab →Former Research Fellows
- 08:40, 11 April 2017 diff hist +146 Biostatistics 866: Main Page →Class Worksheets
- 08:39, 11 April 2017 diff hist 0 N File:2017.04 - Adventures in Human Genetics.pdf current
- 08:10, 25 March 2017 diff hist +60 Biostatistics 866: Main Page →Association Analysis
- 08:10, 25 March 2017 diff hist 0 N File:Question Sheet - 2017 - Liu et al (2013) Nature Genetics.pdf current
- 08:08, 25 March 2017 diff hist +100 Biostatistics 866: Main Page →Association Analysis
- 08:07, 25 March 2017 diff hist 0 N File:Question Sheet - 2017 - Wu et al (2011) American Journal of Human Genetics.pdf current
- 19:14, 19 March 2017 diff hist -54 Biostatistics 866: Main Page →Planned Reading
- 19:13, 19 March 2017 diff hist +189 Biostatistics 866: Main Page →Short Read Sequencing
- 19:10, 19 March 2017 diff hist +45 N File:Question Sheet - 2017 - Kang et al (2010) Nature Genetics .pdf Introduction to linear mixed models for GWAS. current
- 07:37, 13 February 2017 diff hist +464 Biostatistics 866: Main Page →Class Worksheets
- 10:52, 30 January 2017 diff hist +131 Biostatistics 866: Main Page →Planned Reading
- 10:51, 30 January 2017 diff hist +104 Biostatistics 866: Main Page →Class Worksheets
- 10:50, 30 January 2017 diff hist 0 N File:Question Sheet - Boehnke and Cox (1997) AJHG.pdf current
- 12:34, 25 January 2017 diff hist +49 Minimac: Tutorial →Imputation into Phased Haplotypes - minimac(2) current
- 09:58, 25 January 2017 diff hist 0 N File:01. Genotype Imputation.pdf current
- 09:58, 25 January 2017 diff hist 0 N File:00. Warm-up to Genomewide Analyses.pdf current
- 09:36, 19 January 2017 diff hist +1 Biostatistics 866: Main Page →Class Worksheets
- 09:36, 19 January 2017 diff hist +76 Biostatistics 866: Main Page →Class Worksheets
- 09:35, 19 January 2017 diff hist 0 N File:866 - Slides for Hyun.pdf current
- 09:24, 19 January 2017 diff hist +17 830 - MarkovModel::WalkLeft() current
- 09:05, 19 January 2017 diff hist +6 Biostatistics 866: Main Page →Class Worksheets
- 09:05, 19 January 2017 diff hist +106 Biostatistics 866: Main Page →Class Worksheets
- 09:04, 19 January 2017 diff hist 0 N File:Question Sheet - Delaneau et al (2013) Nature Methods.pdf current
- 07:36, 10 January 2017 diff hist +101 Biostatistics 866: Main Page →Class Worksheets
- 16:36, 6 January 2017 diff hist -2 Biostatistics 866: Main Page →Class Worksheets
- 16:36, 6 January 2017 diff hist +42 N 866 Redirected page to Biostatistics 866: Main Page current
- 04:45, 5 January 2017 diff hist +79 Biostatistics 866: Main Page →Class Worksheets
- 04:33, 5 January 2017 diff hist +167 Biostatistics 866: Main Page →Planned Reading
- 04:31, 5 January 2017 diff hist +164 Biostatistics 866: Main Page →Planned Reading
- 04:23, 5 January 2017 diff hist +22 Biostatistics 866: Main Page →Scheduling
- 03:43, 5 January 2017 diff hist 0 Biostatistics 830: Main Page →Scheduling current
- 16:32, 15 December 2016 diff hist +171 Biostatistics 866: Main Page
- 19:11, 1 December 2016 diff hist 0 Biostatistics 866: Main Page →Scheduling
- 19:11, 1 December 2016 diff hist +39 MediaWiki:Sidebar
- 19:09, 1 December 2016 diff hist +42 N Biostatistics 866 Redirected page to Biostatistics 866: Main Page current
- 19:08, 1 December 2016 diff hist +2,396 N Biostatistics 866: Core Competencies Created page with "The Council for Education in Public Health recommends that every course document the Public Health competencies covered in its syllabus. This is the list of competencies cover..." current
- 20:04, 29 November 2016 diff hist +267 Biostatistics 866: Main Page →Planned Reading
- 20:01, 29 November 2016 diff hist +727 Biostatistics 866: Main Page →Planned Reading
- 19:56, 29 November 2016 diff hist +183 Biostatistics 866: Main Page →Planned Reading
- 19:54, 29 November 2016 diff hist +5,600 N Biostatistics 866: Main Page Created page with "== Objective == Gene mapping studies study the relationship between genetic variation and susceptibility to human disease. These studies are changing rapidly with the availab..."
- 11:14, 28 January 2016 diff hist +159 N Imputation Server: Example Created page with "There is no imputation server example yet, but there is an imputation server example file. It is here: Sample Input File" current
- 11:12, 28 January 2016 diff hist 0 N File:Chr20.1000G.EUR.330k.vcf.gz current
- 03:00, 28 January 2016 diff hist -28 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Logging Off current
- 02:57, 28 January 2016 diff hist -13 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Download & Build GotCloud
- 02:56, 28 January 2016 diff hist -14 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Setup
- 02:54, 28 January 2016 diff hist -19 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Setup
- 02:53, 28 January 2016 diff hist +16 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Setup
- 02:52, 28 January 2016 diff hist +13 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Setup
- 02:51, 28 January 2016 diff hist +13 SeqShop: Sequence Mapping and Assembly Practical, May 2015 →Setup
- 12:13, 15 January 2016 diff hist +165 Abecasis Lab →Former Research Fellows
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- 23:21, 20 August 2015 diff hist -42 Abecasis Lab →Former Doctoral Students
- 16:10, 10 July 2015 diff hist +417 Biostatistics 501: Main Page →Textbook current
- 16:03, 10 July 2015 diff hist +6 Biostatistics 501: Main Page →Textbook
- 16:02, 10 July 2015 diff hist +140 Biostatistics 501: Main Page →Scheduling
- 15:37, 10 July 2015 diff hist -114 Biostatistics 501: Main Page
- 15:36, 10 July 2015 diff hist +41 Biostatistics 501: Main Page
- 15:35, 10 July 2015 diff hist +854 Biostatistics 501: Main Page →Useful Resources
- 15:26, 10 July 2015 diff hist -1 Biostatistics 501: Main Page →Target Audience
- 15:25, 10 July 2015 diff hist +2,152 N Biostatistics 501: Main Page Created page with "== Objective == Biostatistics helps us design useful studies and interpret the data we collect. Biostatistics 501 is an introductory Masters level course that introduces stud..."
- 15:20, 10 July 2015 diff hist +8 501 Redirected page to Biostatistics 501: Main Page current
- 15:19, 10 July 2015 diff hist +34 N 501 Created page with "#REDIRECT [BIOSTAT 501: Main Page]"
- 00:42, 22 May 2015 diff hist +166 Abecasis Lab →Former Research Fellows
- 00:41, 22 May 2015 diff hist -33 Abecasis Lab →Research Fellows
- 17:59, 23 April 2015 diff hist -9 Minimac2 →Download
- 16:44, 4 February 2015 diff hist +354 Class Notes →BIOSTAT 615 / 815 Statistical Computing current
- 16:42, 4 February 2015 diff hist -1 Main Page →Projects
- 16:42, 4 February 2015 diff hist +74 Main Page →Projects
- 01:04, 31 January 2015 diff hist +86 NHLBI Informatics Resource current
- 01:02, 31 January 2015 diff hist 0 NHLBI Informatics Resource →Key Technologies
- 01:00, 31 January 2015 diff hist +982 NHLBI Informatics Resource →Key Individuals
- 00:47, 31 January 2015 diff hist +66 NHLBI Informatics Resource →Key Individuals
- 00:45, 31 January 2015 diff hist +1,180 N NHLBI Informatics Resource Created page with "The '''Informatics Resource Core''' provides advice to participating studies, sequencing centers and staff at the National Institutes of Health on the handling, processing and..."
- 23:15, 29 January 2015 diff hist -8 Minimac3 Imputation Cookbook →Download
- 23:14, 29 January 2015 diff hist -82 Minimac3 Imputation Cookbook →Download Reference Panel
- 18:44, 29 January 2015 diff hist -431 Minimac3
- 13:07, 12 December 2014 diff hist +1 SeqShop: December 2014
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- 13:05, 12 December 2014 diff hist 0 N File:2014.12 - Workshop Closing.pdf current
- 05:35, 8 December 2014 diff hist +81 SeqShop: December 2014
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- 05:27, 8 December 2014 diff hist 0 N File:2014.12 - Workshop Introduction.pdf current
- 05:17, 8 December 2014 diff hist +65 Biostatistics 830: Main Page →Class Worksheets
- 05:16, 8 December 2014 diff hist 0 N File:Question Sheet - Kang et al (2010) Nature Genetics.pdf current
- 14:46, 3 December 2014 diff hist -15 LocusZoom Standalone 1.2 Redirected page to LocusZoom Standalone current
- 14:45, 3 December 2014 diff hist +22 Polymutt: a tool for calling polymorphism and de novo mutations in families for sequencing data Redirected page to Polymutt current
- 13:41, 3 December 2014 diff hist +32 Biostatistics 830: Main Page →Class Worksheets
- 03:41, 1 December 2014 diff hist +64 Biostatistics 830: Main Page →Class Worksheets
- 03:41, 1 December 2014 diff hist 0 File:Question Sheet - Liu et al (2013) Nature Genetics.pdf Goncalo uploaded a new version of "File:Question Sheet - Liu et al (2013) Nature Genetics.pdf": Update with volume and page numbers. current
- 05:19, 24 November 2014 diff hist +31 Biostatistics 830: Main Page →Class Worksheets
- 04:28, 24 November 2014 diff hist +68 Biostatistics 830: Main Page →Class Worksheets
- 04:28, 24 November 2014 diff hist 0 N File:Question Sheet - Kircher et al (2014) Nature Genetics.pdf current
- 04:27, 24 November 2014 diff hist +67 Biostatistics 830: Main Page →Class Worksheets
- 04:27, 24 November 2014 diff hist 0 N File:Question Sheet - Albers et al (2010) Genome Research.pdf current
- 15:37, 11 November 2014 diff hist +21 Biostatistics 830: Main Page →Class Worksheets
- 15:36, 11 November 2014 diff hist +50 Biostatistics 830: Main Page →Class Worksheets
- 19:29, 26 October 2014 diff hist 0 File:Question Sheet - Iqbal et al (2012) Nature Genetics.pdf Goncalo uploaded a new version of "File:Question Sheet - Iqbal et al (2012) Nature Genetics.pdf": Removed dependency on Zerbino and Birney (Velvet) paper, so as to allow more flexibility in scheduling. current
- 19:22, 26 October 2014 diff hist +45 Biostatistics 830: Main Page →Class Worksheets
- 00:29, 20 October 2014 diff hist 0 Abecasis Lab →Former Doctoral Students
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- 00:26, 20 October 2014 diff hist +172 Abecasis Lab →Former Research Fellows
- 00:24, 20 October 2014 diff hist -49 Abecasis Lab →Research Fellows
- 13:56, 22 September 2014 diff hist 0 Biostatistics 830: Main Page →Class Worksheets
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- 21:09, 18 September 2014 diff hist 0 N File:Question Sheet - Menelaou et al (2013) Bioinformatics.pdf current
- 21:08, 18 September 2014 diff hist +517 Biostatistics 830: Main Page →Class Worksheets
- 15:18, 15 September 2014 diff hist +125 Biostatistics 830: Main Page →Scheduling
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- 15:12, 9 September 2014 diff hist +178 Biostatistics 830: Main Page →Required Reading
- 18:02, 4 September 2014 diff hist +1 Xiaowei Zhan current
- 18:02, 4 September 2014 diff hist +4 Abecasis Lab →Former Doctoral Students
- 17:59, 4 September 2014 diff hist +100 ChunkChromosome
- 17:59, 4 September 2014 diff hist +100 Minimac →Additional Sources of Information
- 15:49, 2 September 2014 diff hist 0 Biostatistics 830: Main Page →Required Reading
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- 14:49, 2 September 2014 diff hist +101 Biostatistics 830: Main Page →Required Reading
- 14:48, 2 September 2014 diff hist +543 Biostatistics 830: Main Page →Required Reading
- 14:39, 2 September 2014 diff hist 0 Biostatistics 830: Main Page →Required Reading
- 14:39, 2 September 2014 diff hist +150 Biostatistics 830: Main Page →Required Reading
- 14:36, 2 September 2014 diff hist 0 Biostatistics 830: Main Page →Required Reading
- 14:35, 2 September 2014 diff hist +227 Biostatistics 830: Main Page →Required Reading
- 14:34, 2 September 2014 diff hist +531 Biostatistics 830: Main Page →Required Reading
- 14:04, 2 September 2014 diff hist -3,830 Biostatistics 830: Main Page
- 13:59, 2 September 2014 diff hist +8,505 N Biostatistics 830: Fall 2013 Edition Created page with "This is an archive of the Biostatistics 830 class page, as taught in the Fall of 2013. For the current edition of the course see Biostatistics 830: Main Page. == Objectiv..." current
- 11:06, 20 June 2014 diff hist -2 SeqShop: June 2014
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- 11:01, 20 June 2014 diff hist 0 N File:2014.06 - Workshop Closing.pdf current
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- 10:32, 25 April 2014 diff hist +256 Abecasis Lab →Alumni
- 10:25, 25 April 2014 diff hist -16 Abecasis Lab →Graduate Students
- 10:02, 27 March 2014 diff hist -95 RAREMETALWORKER METHOD →Single Variant Score Tests
- 09:58, 27 March 2014 diff hist +167 RAREMETALWORKER METHOD →Single Variant Score Tests
- 09:56, 27 March 2014 diff hist 0 RAREMETALWORKER METHOD
- 09:56, 27 March 2014 diff hist -101 RAREMETALWORKER METHOD →Brief Introduction
- 17:55, 31 January 2014 diff hist +50 Abecasis Lab →Former Research Fellows
- 17:23, 31 January 2014 diff hist +19 Abecasis Lab →Staff
- 17:22, 31 January 2014 diff hist +64 Abecasis Lab →Former Staff
- 17:20, 31 January 2014 diff hist -30 Abecasis Lab →Staff
- 17:20, 31 January 2014 diff hist +22 Abecasis Lab →Former Masters Students
- 17:18, 31 January 2014 diff hist +150 Abecasis Lab →Former Research Fellows
- 17:17, 31 January 2014 diff hist -18 Abecasis Lab →Research Fellows
- 17:17, 31 January 2014 diff hist -20 Abecasis Lab →Graduate Students
- 17:15, 31 January 2014 diff hist +14 Abecasis Lab →Former Masters Students
- 16:48, 29 January 2014 diff hist +1 Tutorial: RAREMETAL →STEP 3: Run RAREMETAL for Meta-Analysis
- 16:48, 29 January 2014 diff hist +1 Tutorial: RAREMETAL →STEP 2: Analyze individual samples using RAREMETALWORKER
- 16:47, 29 January 2014 diff hist +17 Tutorial: RAREMETAL →STEP 3: Run RAREMETAL for Meta-Analysis
- 16:44, 29 January 2014 diff hist +1 Tutorial: RAREMETAL →STEP 2: Analyze individual samples using RAREMETALWORKER
- 09:51, 29 January 2014 diff hist 0 Minimac →using a MaCH reference panel
- 09:51, 29 January 2014 diff hist -7 Minimac →using a VCF reference panel
- 08:46, 29 January 2014 diff hist +541 Tutorial: RAREMETAL
- 18:19, 16 January 2014 diff hist +21 Abecasis Lab →Graduate Students
- 11:38, 16 December 2013 diff hist +13 Abecasis Lab →Former Masters Students
- 11:37, 16 December 2013 diff hist -1 Abecasis Lab →Graduate Students
- 16:08, 6 December 2013 diff hist 0 Biostatistics 830: Main Page →Class Worksheets
- 16:08, 6 December 2013 diff hist +83 Biostatistics 830: Main Page →Class Worksheets
- 16:08, 6 December 2013 diff hist 0 N File:Question Sheet - Jun et al (2012) American Journal of Human Genetics.pdf current
- 16:07, 4 December 2013 diff hist 0 Rvtests →Genotyep filters
- 15:44, 4 December 2013 diff hist +1 RAREMETAL Documentation →Where to Download
- 13:30, 4 December 2013 diff hist 0 Biostatistics 830: Main Page →Class Worksheets
- 13:30, 4 December 2013 diff hist +82 Biostatistics 830: Main Page →Class Worksheets
- 13:29, 4 December 2013 diff hist 0 N File:Question Sheet - Wu et al (2011) American Journal of Human Genetics.pdf current
- 18:03, 26 November 2013 diff hist +64 Biostatistics 830: Main Page →Class Worksheets
- 17:55, 26 November 2013 diff hist 0 N File:Question Sheet - Liu et al (2013) Nature Genetics.pdf
- 16:33, 25 November 2013 diff hist 0 Biostatistics 830: Main Page →Class Worksheets
- 16:33, 25 November 2013 diff hist +93 Biostatistics 830: Main Page →Class Worksheets
- 16:10, 25 November 2013 diff hist +94 Biostatistics 830: Main Page →Class Worksheets
- 16:01, 25 November 2013 diff hist 0 N File:Question Sheet - Li and Durbin (2011) Nature.pdf current
- 18:19, 18 November 2013 diff hist +28 Abecasis Group Awards
- 18:19, 18 November 2013 diff hist +152 Abecasis Group Awards →International Genetic Epidemiology Society
- 16:10, 12 November 2013 diff hist -1 Biostatistics 830: Main Page →Class Worksheets
- 16:09, 12 November 2013 diff hist +7 Biostatistics 830: Main Page →Class Worksheets
- 16:09, 12 November 2013 diff hist +60 Biostatistics 830: Main Page →Class Worksheets
- 16:09, 12 November 2013 diff hist 0 N File:Question Sheet - Iqbal et al (2012) Nature Genetics.pdf
- 04:01, 7 November 2013 diff hist +146 Biostatistics 830: Main Page →Class Worksheets
- 04:00, 7 November 2013 diff hist 0 File:Question Sheet - Zerbino and Birney (2008) Bioinformatics.pdf Goncalo uploaded a new version of "File:Question Sheet - Zerbino and Birney (2008) Bioinformatics.pdf": Removed unnecessary second page. current
- 03:58, 7 November 2013 diff hist 0 File:Question Sheet - Li and Durbin (2009) Bioinformatics.pdf Goncalo uploaded a new version of "File:Question Sheet - Li and Durbin (2009) Bioinformatics.pdf": Fixed typos in code example. current
- 03:57, 7 November 2013 diff hist 0 N File:Question Sheet - Zerbino and Birney (2008) Bioinformatics.pdf
- 12:19, 30 October 2013 diff hist +78 Biostatistics 830: Main Page →Class Worksheets
- 12:19, 30 October 2013 diff hist 0 N File:Question Sheet - Li and Durbin (2009) Bioinformatics.pdf
- 12:18, 30 October 2013 diff hist +24 Biostatistics 830: Main Page →Class Worksheets
- 16:09, 28 October 2013 diff hist +6 830 - MaqIndex::LookupWord() current
- 13:58, 28 October 2013 diff hist +268 N 830 - BestAlignment::IterateCache() Created page with "<source lang="cpp"> unsigned int BestAlignment::IterateCache(unsigned int key) { int h = (key * PRIME) % cacheSize; while (cache[h] != -1 && cache[h] ..." current
- 13:53, 28 October 2013 diff hist +4 Biostatistics 830 - Code Snippets →Code Snippets current
- 13:53, 28 October 2013 diff hist +51 N 830 - BestAlignment::ClearCache() Goncalo moved page 830 - BestAlignment::ClearCache() to 830 - BestAlignment::ClearPositions() current
- 13:53, 28 October 2013 diff hist 0 m 830 - BestAlignment::ClearPositions() Goncalo moved page 830 - BestAlignment::ClearCache() to 830 - BestAlignment::ClearPositions() current
- 13:52, 28 October 2013 diff hist +142 N 830 - BestAlignment::ClearPositions() Created page with "<source lang="cpp"> void BestAlignment::ClearPositions() { cacheItems = 0; for (int i = 0; i < cacheSize; i++) cache[i] = -1; } </source>"
- 13:51, 28 October 2013 diff hist +265 N 830 - BestAlignment::isNewPosition() Created page with "<source lang="cpp"> bool BestAlignment::isNewPosition(unsigned int pos) { int h = IterateCache(pos); if (cache[h] == pos) return false; cache[h] = pos; cacheItems++; ..." current
- 13:49, 28 October 2013 diff hist +122 Biostatistics 830 - Code Snippets →Code Snippets
- 13:47, 28 October 2013 diff hist +32 830 - BestAlignment::EvaluateAlignment() (detailed comparison) current
- 13:47, 28 October 2013 diff hist +584 N 830 - BestAlignment::EvaluateAlignment() (detailed comparison) Created page with "void BestAlignment::EvaluateAlignment(String & reference, FastQ & read, unsigned int pos, bool fwd) { if (pos < 0 || read.Length() + pos > reference.Length()) return; if ..."
- 13:46, 28 October 2013 diff hist +350 N 830 - BestAlignment::EvaluateAlignment() (main loop) Created page with "<source lang="cpp"> void BestAlignment::EvaluateAlignment(MaqIndex & index, FastQ & read, unsigned int offset, bool fwd) { unsigned int start, stop; index.LookupWord(read...." current
- 13:45, 28 October 2013 diff hist +32 830 - BestAlignment::MaqAlignment() current
- 13:44, 28 October 2013 diff hist +1,224 N 830 - BestAlignment::MaqAlignment() Created page with "void BestAlignment::MaqAlignment(MaqIndex & index1, MaqIndex & index2, MaqIndex & index3, FastQ & read) { position = -1; sumQ = mapQ = 0; mismatches = read.Length(); forwa..."
- 13:44, 28 October 2013 diff hist +167 Biostatistics 830 - Code Snippets →Code Snippets
- 13:39, 28 October 2013 diff hist +500 N 830 - MaqIndex::GetWord() Created page with "<source lang="cpp"> long long MaqIndex::GetWord(String & sequence, unsigned int position) { long long word = 0; if (position + mask.Length() > sequence.Length()) return -..." current
- 13:38, 28 October 2013 diff hist +613 N 830 - MaqIndex::BuildIndex() Created page with "<source lang="cpp"> void MaqIndex::BuildIndex() { // This function could use quite a lot of memory ... // 4 bytes per word // 4 bytes per position // 4 bytes per ..." current
- 13:36, 28 October 2013 diff hist +1,079 N 830 - MaqIndex::LookupWord() Created page with "<source lang="cpp"> bool MaqIndex::LookupWord(String & sequence, int offset, unsigned int & firstOccurrence, unsigned int & lastOccurrence) { firstOccurrence = 0; lastOccurr..."
- 13:34, 28 October 2013 diff hist -2 830 - MaqIndex::CompareToIndex() current
- 13:34, 28 October 2013 diff hist +345 N 830 - MaqIndex::CompareToIndex() Created page with "<source lang="cpp"> int MaqIndex::CompareToIndex(String & sequence, unsigned int offset, unsigned int index) { index = sortedPositions[index]; for (unsigned int i = 0; i <..."
- 13:33, 28 October 2013 diff hist +137 Biostatistics 830 - Code Snippets →Code Snippets
- 13:29, 28 October 2013 diff hist +2,285 N 830 - BasicMapper::main() Created page with "<source lang="cpp"> int main(int argc, char ** argv) { // Record start time for this run time_t start = time(NULL); // This function summarizes available options and proc..." current
- 13:28, 28 October 2013 diff hist +266 Biostatistics 830 - Code Snippets →Howie et al (2012) Nat Genet
- 13:26, 28 October 2013 diff hist +54 Biostatistics 830: Main Page →Required Reading
- 12:45, 25 October 2013 diff hist +220 Abecasis Lab →Former Doctoral Students
- 14:48, 14 October 2013 diff hist +95 RAREMETAL Documentation →Useful Wiki Pages
- 05:11, 11 October 2013 diff hist +93 Biostatistics 830: Main Page →Class Worksheets
- 05:10, 11 October 2013 diff hist 0 N File:Question Sheet - Li et al (2008) Genome Research.pdf current
- 11:13, 3 October 2013 diff hist +53 N RAREMETAL-SOFTWARE Goncalo moved page RAREMETAL-SOFTWARE to Rare Variant Analysis and Meta-Analysis current
- 11:13, 3 October 2013 diff hist 0 m Rare Variant Analysis and Meta-Analysis Goncalo moved page RAREMETAL-SOFTWARE to Rare Variant Analysis and Meta-Analysis current
- 16:16, 2 October 2013 diff hist 0 830 - Haplotyper::ImputeGenotypes() (edge) current
- 16:15, 2 October 2013 diff hist 0 830 - Haplotyper::ImputeGenotypes() (internal) current
- 16:03, 2 October 2013 diff hist 0 830 - Haplotyper::SampleOneHaplotype() current
- 15:55, 2 October 2013 diff hist -1 830 - Haplotyper::SummarizeOptions() current
- 15:06, 2 October 2013 diff hist +574 830 - MINIMAC::main() current
- 14:57, 2 October 2013 diff hist +421 830 - MINIMAC::main()
- 14:52, 2 October 2013 diff hist -1 830 - MINIMAC::main()
- 14:52, 2 October 2013 diff hist +11,013 N 830 - MINIMAC::main() Created page with "</source lang="cpp"> int main(int argc, char ** argv) { time_t start = time(NULL); printf("MiniMac - Imputation into phased haplotypes\n" "(c) 2010-2011 Goncalo..."
- 14:51, 2 October 2013 diff hist +27 Biostatistics 830 - Code Snippets →Code Snippets
- 14:31, 2 October 2013 diff hist +15 Biostatistics 830 - Code Snippets →Code Snippets
- 14:31, 2 October 2013 diff hist +75 N 830 - Haplotyper::ScoreLeftConditional smart() Goncalo moved page 830 - Haplotyper::ScoreLeftConditional smart() to 830 - Haplotyper::ScoreLeftConditional() (smart, complicated): Consistency. current
- 14:31, 2 October 2013 diff hist 0 m 830 - Haplotyper::ScoreLeftConditional() (smart, complicated) Goncalo moved page 830 - Haplotyper::ScoreLeftConditional smart() to 830 - Haplotyper::ScoreLeftConditional() (smart, complicated): Consistency. current
- 14:29, 2 October 2013 diff hist +215 830 - Haplotyper::ImputeGenotypes() (internal)
- 14:28, 2 October 2013 diff hist +645 N 830 - Haplotyper::ImputeGenotypes() (internal) Created page with "void Haplotyper::ImputeGenotypes(float * matrix1, float * matrix2, int marker) { posterior[0][marker] = posterior[1][marker] = posterior[2][marker] = 0.0; for (int i..."
- 14:26, 2 October 2013 diff hist +673 N 830 - Haplotyper::ImputeGenotypes() (edge) Created page with "<source lang="cpp"> void Haplotyper::ImputeGenotypes(float * matrix, int marker) { posterior[0][marker] = posterior[1][marker] = posterior[2][marker] = 0.0; for (in..."
- 14:25, 2 October 2013 diff hist +100 Biostatistics 830 - Code Snippets →Code Snippets
- 14:19, 2 October 2013 diff hist -498 830 - Haplotyper::ImputeGenotypes() current
- 14:16, 2 October 2013 diff hist -1 830 - Haplotyper::SampleOneHaplotype()
- 14:15, 2 October 2013 diff hist +198 830 - Haplotyper::SampleOneHaplotype()
- 14:14, 2 October 2013 diff hist +316 N 830 - Haplotyper::SampleOneHaplotype() Created page with "<source lang="cpp"> float Haplotyper::SampleOneHaplotype(float * vector, double first, double & second, float & choice) { for (second = 0; second < states; second++) ..."
- 14:14, 2 October 2013 diff hist +44 Biostatistics 830 - Code Snippets →Code Snippets
- 14:13, 2 October 2013 diff hist +2 830 - Haplotyper::SummarizeOptions()
- 14:13, 2 October 2013 diff hist +1,150 N 830 - Haplotyper::SummarizeOptions() Created page with "<code lang="cpp"> float Haplotyper::SummarizeOptions(float * vector, float ** left, float ** right, float theta, int first, int second) { right[0][0] = (1. - theta) * (..."
- 14:12, 2 October 2013 diff hist +42 Biostatistics 830 - Code Snippets →Code Snippets
- 14:11, 2 October 2013 diff hist +30 830 - Haplotyper::SampleChromosomes() current
- 14:11, 2 October 2013 diff hist +1,350 N 830 - Haplotyper::SampleChromosomes() Created page with " void Haplotyper::SampleChromosomes(Random * rand) { RewindMemoryPool(); RetrieveMemoryBlock(markers - 1); int first = 0, second = 0; SampleHaplotypes(leftMat..."
- 14:10, 2 October 2013 diff hist +9 830 - Haplotyper::SampleHaplotypes() current
- 14:08, 2 October 2013 diff hist -589 830 - Haplotyper::SampleHaplotypes()
- 14:08, 2 October 2013 diff hist +43 Biostatistics 830 - Code Snippets →Code Snippets
- 14:06, 2 October 2013 diff hist +4 830 - Haplotyper::SampleHaplotypes()
- 14:05, 2 October 2013 diff hist +1,364 N 830 - Haplotyper::SampleHaplotypes() Created page with "<source lang="cpp"> void Haplotyper::SampleChromosomes(Random * rand) { RewindMemoryPool(); RetrieveMemoryBlock(markers - 1); int first = 0, second = 0; Sampl..."
- 14:05, 2 October 2013 diff hist +42 Biostatistics 830 - Code Snippets →Code Snippets
- 13:30, 2 October 2013 diff hist +1 830 - Haplotyper::ScoreLeftConditional() current
- 13:27, 2 October 2013 diff hist -376 830 - Haplotyper::ScoreLeftConditional()
- 13:26, 2 October 2013 diff hist +966 N 830 - Haplotyper::ScoreLeftConditional() (smart, complicated) Created page with "<source lang="cpp"> // This version of the ScoreLeftConditional() function deals with sites // where no genotypes are observed a little more efficiently. // void Haplotyper:..."
- 13:25, 2 October 2013 diff hist +52 Biostatistics 830 - Code Snippets →Code Snippets
- 02:03, 27 September 2013 diff hist -16 Abecasis Lab →Staff
- 01:30, 27 September 2013 diff hist 0 Abecasis Lab →Former Research Fellows
- 15:01, 25 September 2013 diff hist +1,257 N 830 - MarkovModel::CountErrorsAndRecombinants() Created page with "<source lang="cpp"> void MarkovModel::CountErrorsAndRecombinants(char * observed, char ** haplotypes, float ** freq) { float * swap; float * vector = new float [state..." current
- 14:57, 25 September 2013 diff hist +508 N 830 - MarkovModel::CountErrors() Created page with "<source lang="cpp"> double MarkovModel::CountErrors(float * vector, char ** haplotypes, int position, char observed, double e, double freq) { if (observed == 0) re..." current
- 14:54, 25 September 2013 diff hist +487 N 830 - MarkovModel::CountRecombinants() Created page with "<source lang="cpp"> double MarkovModel::CountRecombinants(float * from, float * to, double r) { if (r == 0) return 0.0; double sum = 0.0; for (int i = 0; i ..." current
- 14:53, 25 September 2013 diff hist +135 Biostatistics 830 - Code Snippets →Code Snippets
- 14:50, 25 September 2013 diff hist +1,345 N 830 - MarkovModel::Impute() Created page with "<source lang="cpp"> void MarkovModel::Impute(char * major, char * observed, float * probs, char ** haplotypes, float ** freqs, int position) { d..." current
- 14:45, 25 September 2013 diff hist +33 Biostatistics 830 - Code Snippets →Code Snippets
- 14:45, 25 September 2013 diff hist +974 N 830 - MarkovModel::WalkRight() Created page with "<source lang="cpp"> void MarkovModel::WalkRight(char * major, char * observed, char ** haplotypes, float ** freqs) { float * swap; float * vector = new float [states]..." current
- 14:43, 25 September 2013 diff hist +36 Biostatistics 830 - Code Snippets →Code Snippets
- 14:42, 25 September 2013 diff hist +637 N 830 - MarkovModel::WalkLeft() Created page with "<source lang="cpp"> void MarkovModel::WalkLeft(char * observed, char ** haplotypes, float ** freqs) { // Initialize likelihoods at first position for (int i = 0; i < ..."
- 14:41, 25 September 2013 diff hist +35 Biostatistics 830 - Code Snippets →Code Snippets
- 14:40, 25 September 2013 diff hist -36 830 - MarkovModel::Condition() current
- 14:40, 25 September 2013 diff hist +476 N 830 - MarkovModel::Condition() Created page with "<source lang="cpp"> void MarkovModel::Condition(float * vector, char ** haplotypes, int position, char observed, double e, double freq) { if ..."
- 14:40, 25 September 2013 diff hist +1 Biostatistics 830 - Code Snippets →Code Snippets
- 14:40, 25 September 2013 diff hist +35 Biostatistics 830 - Code Snippets →Code Snippets
- 14:39, 25 September 2013 diff hist -202 830 - MarkovModel::Transpose() current
- 14:37, 25 September 2013 diff hist +767 N 830 - MarkovModel::Transpose() Created page with "<source lang="cpp"> void MarkovModel::Transpose(float * from, float * to, double r) { if (r == 0) for (int i = 0; i < states; i++) to[i] = from[i]; els..."
- 14:36, 25 September 2013 diff hist +2 Biostatistics 830 - Code Snippets →Code Snippets
- 14:36, 25 September 2013 diff hist +34 Biostatistics 830 - Code Snippets →Howie et al (2012) Nat Genet
- 14:33, 25 September 2013 diff hist +72 Biostatistics 830: Main Page →Scheduling
- 14:33, 25 September 2013 diff hist 0 N File:Question Sheet - Li et al (2010) Gen Epid.pdf current
- 14:32, 25 September 2013 diff hist +81 Biostatistics 830: Main Page →Class Worksheets
- 14:32, 25 September 2013 diff hist 0 N File:Question Sheet - Howie et al (2012) Nat Genet.pdf current
- 14:31, 25 September 2013 diff hist +174 Biostatistics 830: Main Page →Scheduling
- 14:29, 25 September 2013 diff hist 0 N File:Question Sheet - Browing and Browning (2012) Am J Hum Genet.pdf current
- 11:00, 25 September 2013 diff hist +208 Biostatistics 830 - Code Snippets →Howie et al (2012) Nat Genet
- 11:00, 25 September 2013 diff hist +54 Biostatistics 830: Main Page →Required Reading
- 10:59, 25 September 2013 diff hist +82 Biostatistics 830 - Code Snippets →Li et al (2010) Genet Epidemiol
- 10:58, 25 September 2013 diff hist +1,613 Biostatistics 830: Main Page →Scheduling
- 15:56, 13 September 2013 diff hist -163 830 - Haplotyper::RandomSetup() current
- 15:07, 13 September 2013 diff hist +16 Biostatistics 830: Main Page →Required Reading
- 15:06, 13 September 2013 diff hist -1 830 - Haplotyper::ImputeGenotypes()
- 15:06, 13 September 2013 diff hist +1,221 N 830 - Haplotyper::ImputeGenotypes() Created page with "</source lang="cpp"> void Haplotyper::ImputeGenotypes() { RewindMemoryPool(); // Process the last position RetrieveMemoryBlock(markers - 1); ImputeGenotypes(le..."
- 15:04, 13 September 2013 diff hist +41 Biostatistics 830 - Code Snippets →Code Snippets
- 15:02, 13 September 2013 diff hist +31 830 - Haplotyper::ScoreLeftConditional()
- 15:01, 13 September 2013 diff hist +797 N 830 - Haplotyper::ScoreLeftConditional() Created page with "void Haplotyper::ScoreLeftConditional() { ResetMemoryPool(); GetMemoryBlock(0); SetupPrior(leftMatrices[0]); ConditionOnData(leftMatrices[0], 0, current_genoty..."
- 15:00, 13 September 2013 diff hist +46 Biostatistics 830 - Code Snippets →Code Snippets
- 14:58, 13 September 2013 diff hist 0 830 - Haplotyper::ConditionOnData() current
- 14:58, 13 September 2013 diff hist +666 N 830 - Haplotyper::ConditionOnData() Created page with "<source code="cpp"> void Haplotyper::ConditionOnData(float * matrix, int marker, char genotype) { // We treat missing genotypes as uninformative about the mosaic's //..."
- 14:56, 13 September 2013 diff hist 0 830 - Haplotyper::SetupPrior() current
- 14:56, 13 September 2013 diff hist +324 N 830 - Haplotyper::SetupPrior() Created page with "<source code="cpp"> void Haplotyper::SetupPrior(float * matrix) { float prior = 1.0 / (states * states); for (int i = 0; i < states; i++) { for (int j = ..."
- 14:55, 13 September 2013 diff hist +77 Biostatistics 830 - Code Snippets →Code Snippets
- 14:52, 13 September 2013 diff hist +1,947 N 830 - Haplotyper::Transpose() Created page with "<source lang="cpp"> void Haplotyper::Transpose(float * source, float * dest, float theta) { // *source and *dest store a vector with likelihood information for each pos..." current
- 14:48, 13 September 2013 diff hist +1 Biostatistics 830 - Code Snippets →Code Snippets
- 14:48, 13 September 2013 diff hist +34 Biostatistics 830 - Code Snippets →Code Snippets
- 14:47, 13 September 2013 diff hist +91 830 - Haplotyper::RandomSetup()
- 14:46, 13 September 2013 diff hist +1,837 N 830 - Haplotyper::RandomSetup() Created page with "<source lang="cpp"> void Haplotyper::RandomSetup(Random * rand) { // access two arrays... // genotypes[i][j] includes genotypes for each individual // i..."
- 14:42, 13 September 2013 diff hist +37 Biostatistics 830 - Code Snippets →Code Snippets
- 14:38, 13 September 2013 diff hist +263 N Biostatistics 830 - Code Snippets Created page with "== Li et al (2010) Genet Epidemiol == === Full Citation === Li Y, Willer CJ, Ding J, Scheet P, Abecasis GR (2010) MaCH: using sequence and genotype data to estimate haplotyp..."
- 14:37, 13 September 2013 diff hist +16 Biostatistics 830: Main Page →Required Reading
- 14:37, 13 September 2013 diff hist +22 Biostatistics 830: Main Page →Required Reading
- 10:50, 9 September 2013 diff hist -2 Abecasis Group Awards
- 10:50, 9 September 2013 diff hist +129 Abecasis Group Awards →Goncalo's Awards
- 15:10, 4 September 2013 diff hist -12 Biostatistics 830: Main Page →Required Reading
- 15:09, 4 September 2013 diff hist +175 Biostatistics 830: Main Page →Required Reading
- 15:08, 4 September 2013 diff hist +162 Biostatistics 830: Main Page →Required Reading
- 15:05, 4 September 2013 diff hist +51 Biostatistics 830: Main Page →Required Reading
- 10:32, 4 September 2013 diff hist -3 Biostatistics 830: Main Page →Required Reading
- 10:31, 4 September 2013 diff hist +26 Biostatistics 830: Main Page →Required Reading
- 10:30, 4 September 2013 diff hist +130 Biostatistics 830: Main Page →Required Reading
- 10:25, 4 September 2013 diff hist +2,526 Biostatistics 830: Main Page →Required Reading
- 09:27, 4 September 2013 diff hist +2,396 N Biostatistics 830: Core Competencies Created page with "The Council for Education in Public Health recommends that every course document the Public Health competencies covered in its syllabus. This is the list of competencies cover..." current
- 09:24, 4 September 2013 diff hist -198 Biostatistics 666: Main Page
- 09:22, 4 September 2013 diff hist +2,344 N Biostatistics 830: Main Page Created page with "== Objective == Gene mapping studies study the relationship between genetic variation and susceptibility to human disease. These studies are changing rapidly with the availab..."
- 09:15, 4 September 2013 diff hist +42 N 830 Redirected page to Biostatistics 830: Main Page current
- 09:15, 4 September 2013 diff hist +42 N Biostatistics 830 Redirected page to Biostatistics 830: Main Page current
- 09:13, 4 September 2013 diff hist +39 MediaWiki:Sidebar
- 12:33, 12 August 2013 diff hist +27 Short Workshops →Low Pass Whole Genomes
- 12:32, 12 August 2013 diff hist +137 Short Workshops
- 01:51, 3 August 2013 diff hist +44 Goncalo Abecasis →2013 Overton Prize current
- 01:50, 3 August 2013 diff hist -2 Goncalo Abecasis
- 01:50, 3 August 2013 diff hist +66 Goncalo Abecasis →2013 Overton Prize
- 12:10, 2 August 2013 diff hist +100 Goncalo Abecasis →See Also
- 12:07, 2 August 2013 diff hist 0 N File:2013.07 - Overton Award Final.pdf current
- 10:17, 2 August 2013 diff hist +114 Abecasis Group Awards →American Society of Human Genetics
- 15:24, 12 June 2013 diff hist +37 Dajiang Liu →Rare Metal and Rare Metal Worker
- 15:23, 12 June 2013 diff hist +228 Dajiang Liu
- 15:21, 12 June 2013 diff hist +40 Scott Vrieze
- 15:20, 12 June 2013 diff hist 0 N File:Scott Vrieze.jpg current
- 12:14, 12 June 2013 diff hist +17 Dajiang Liu
- 03:30, 12 June 2013 diff hist +324 Exome Chip Design →Cautious Sites
- 11:42, 11 June 2013 diff hist +187 N Dajiang Liu Created page with 'Dajiang Liu is currently a research fellow working on rare variant analysis methods with Goncalo Abecasis. Previously, he completed his Ph.D. at Rice University working with Suza…'
- 11:41, 11 June 2013 diff hist +4 Abecasis Lab →Research Fellows
- 04:29, 10 June 2013 diff hist +12 Abecasis Lab →Staff
- 04:28, 10 June 2013 diff hist +13 Abecasis Lab →Graduate Students
- 14:56, 7 June 2013 diff hist +118 Goncalo Abecasis: Interview with Christiana Fogg current
- 12:24, 5 June 2013 diff hist +6 Abecasis Group Awards →Goncalo's Awards
- 12:22, 5 June 2013 diff hist -8 Abecasis Group Awards →Goncalo's Awards
- 12:21, 5 June 2013 diff hist +115 Abecasis Group Awards →Goncalo's Awards
- 18:28, 21 May 2013 diff hist -9 Trial Enrichment →Download current
- 18:27, 21 May 2013 diff hist +48 VerifyBamID →Interpreting output files
- 21:08, 15 May 2013 diff hist +874 Goncalo Abecasis
- 18:32, 15 May 2013 diff hist +18,913 N Goncalo Abecasis: Interview with Christiana Fogg Created page with 'In March 2013, I was awarded the Overton Prize by the International Society for Computational Biology (ISCB). I am not sure I deserve it and, perhaps to double check if they had …'
- 18:23, 15 May 2013 diff hist +70 Goncalo Abecasis
- 18:22, 15 May 2013 diff hist +1 Goncalo Abecasis
- 18:22, 15 May 2013 diff hist -2 Goncalo Abecasis
- 00:20, 13 May 2013 diff hist +6 TrioCaller →Introduction
- 00:19, 13 May 2013 diff hist +16 TrioCaller →Note: if you are interesting in detecting de novo mutations, or are working on a small number of families with high coverage data (e.g. exome sequencing), please first try our sister program Polymutt .
- 00:14, 13 May 2013 diff hist -34 TrioCaller →Introduction
- 10:08, 8 March 2013 diff hist +231 Nm User talk:Dajiang Liu Welcome! current
- 10:08, 8 March 2013 diff hist +1,163 Nm User:Dajiang Liu Creating user page with biography of new user. current
- 21:51, 7 March 2013 diff hist -83 Tutorial: RAREMETAL →STEP 1: Install Software and Download Example Data Sets
- 21:47, 7 March 2013 diff hist -319 Tutorial: RAREMETAL →Introduction
- 13:36, 5 March 2013 diff hist +3 Minimac: Tutorial →Getting Started
- 13:35, 5 March 2013 diff hist +1 Minimac: Tutorial →Getting Started
- 13:30, 5 March 2013 diff hist +10 Minimac: Tutorial →Getting Started
- 00:05, 4 March 2013 diff hist +15 Abecasis Lab →Research Fellows
- 15:32, 31 January 2013 diff hist +89 Minimac: Tutorial →Imputation into Phased Haplotypes - minimac
- 15:29, 31 January 2013 diff hist -88 Minimac: Tutorial →Imputation into Phased Haplotypes - minimac
- 09:10, 31 January 2013 diff hist +955 Minimac Diagnostics →Leave One Out Statistics
- 09:00, 31 January 2013 diff hist +6 Minimac
- 09:00, 31 January 2013 diff hist +446 Minimac
- 12:58, 10 January 2013 diff hist +35 Abecasis Lab →Graduate Students
- 12:57, 10 January 2013 diff hist +16 Abecasis Lab →Former Masters Students
- 12:57, 10 January 2013 diff hist -1 Abecasis Lab →Graduate Students
- 12:56, 10 January 2013 diff hist +133 Abecasis Lab →Former Doctoral Students
- 12:54, 10 January 2013 diff hist -12 Abecasis Lab →Graduate Students
- 15:53, 9 January 2013 diff hist +113 Code Sample: Generating QQ Plots in R
- 15:53, 9 January 2013 diff hist +114 Code Sample: Generating Manhattan Plots in R
- 15:20, 9 January 2013 diff hist 0 N File:Sample-manhattan-plot-B.png current
- 15:20, 9 January 2013 diff hist 0 N File:Sample-manhattan-plot-A.png current
- 15:19, 9 January 2013 diff hist 0 N File:Sample-manhattan-plot.png current
- 15:17, 9 January 2013 diff hist +20,172 N Code Sample: Generating Manhattan Plots in R Created page with 'A useful way to summarize genome-wide association data is with a Manhattan plot. This type of plot has a point for every SNP or location tested with the position in the genome al…'
- 12:50, 9 January 2013 diff hist +9 Exome Chip Design →Second Generation Arrays
- 12:49, 9 January 2013 diff hist 0 Exome Chip Design →Second Generation Arrays
- 12:49, 9 January 2013 diff hist +2,085 Exome Chip Design →Illumina Exome Arrays
- 11:50, 22 December 2012 diff hist +154 Abecasis Lab →Former Research Fellows
- 11:48, 22 December 2012 diff hist -17 Abecasis Lab →Staff
- 11:48, 22 December 2012 diff hist +2 Abecasis Lab →International Visitors
- 11:47, 22 December 2012 diff hist +16 Abecasis Lab →Research Fellows
- 17:06, 21 December 2012 diff hist +235 Nm User talk:Chaolong Wang Welcome! current
- 17:06, 21 December 2012 diff hist +389 Nm User:Chaolong Wang Creating user page with biography of new user. current
- 15:34, 20 December 2012 diff hist -7 Biostatistics 666: Main Page
- 09:19, 5 December 2012 diff hist 0 File:666.24.pdf uploaded a new version of "File:666.24.pdf": →Minor tweaks current
- 06:56, 5 December 2012 diff hist -8 Biostatistics 666: Core Competencies current
- 10:58, 4 December 2012 diff hist +2,404 N Biostatistics 666: Core Competencies Created page with 'The Council for Education in Public Health recommends that every course document the Public Health competencies covered in its subject syllabus. This is the list of competencies …'
- 10:45, 4 December 2012 diff hist +131 Biostatistics 666: Main Page →Objective
- 19:25, 3 December 2012 diff hist +67 Abecasis Lab →Former Doctoral Students
- 19:22, 3 December 2012 diff hist +44 Abecasis Lab →Former Research Fellows
- 19:20, 3 December 2012 diff hist 0 Abecasis Lab →Former Doctoral Students
- 19:18, 3 December 2012 diff hist 0 Abecasis Lab →Former Doctoral Students
- 19:16, 3 December 2012 diff hist +99 Abecasis Lab →Former Research Fellows
- 05:22, 3 December 2012 diff hist 0 File:666.20.pdf uploaded a new version of "File:666.20.pdf": This version adds a tiny bit more detail on the use of empirical kinship coefficients. current
- 04:47, 3 December 2012 diff hist 0 Biostatistics 666: Main Page →Class Notes
- 04:46, 3 December 2012 diff hist +135 Biostatistics 666: Introduction to De Novo Assembly →Recommended Reading
- 04:44, 3 December 2012 diff hist +87 Biostatistics 666: Introduction to De Novo Assembly →Overview
- 04:43, 3 December 2012 diff hist 0 File:666.2012.01.pdf uploaded a new version of "File:666.2012.01.pdf": Added discussion of Lander Waterman results on contig lengths. current
- 14:58, 28 November 2012 diff hist 0 File:666.2011.01.pdf uploaded a new version of "File:666.2011.01.pdf": Typo fixes. current
- 09:28, 28 November 2012 diff hist 0 File:666.2011.01.pdf uploaded a new version of "File:666.2011.01.pdf": Minor updates (for consistency with new preceding lectures); added references for variable threshold test.
- 16:28, 27 November 2012 diff hist +116 Abecasis Group Awards →European Society of Human Genetics
- 09:40, 26 November 2012 diff hist +10 Biostatistics 666: Introduction to De Novo Assembly →Recommended Reading
- 09:39, 26 November 2012 diff hist +399 N Biostatistics 666: Introduction to De Novo Assembly Created page with '== Overview == Introduces the issues surrounding de novo assembly of complex genomes, with a particular focus on issues related to variant discovery. == Slides == [[Media:666.…'