User contributions
1 November 2010
BamUtil: mergeBam
no edit summary
+10
BamUtil: mergeBam
no edit summary
-65
BamUtil: mergeBam
no edit summary
+359
BamUtil: mergeBam
no edit summary
-1
BamUtil: mergeBam
no edit summary
+70
BamUtil: mergeBam
Created page with ' rgMergeBam merges multiple sorted BAM files into one BAM file like 'samtools merge' command, but merges BAM headers. * Checks that the HD and SQ tags are identical across the BA…'
Pileup
Created page with ' Features: # Option to include a VCF file to select chromosome locations of interest #* Input VCF file can be gzipped or plain text. #*The output VCF file when an input VCF file …'
BamUtil: polishBam
no edit summary
+3,542
29 October 2010
BamUtil: polishBam
no edit summary
-56
BamUtil: polishBam
no edit summary
-52
BamUtil: polishBam
no edit summary
+379
BamUtil: polishBam
Created page with '== Trim BAM == The <code>trimBam</code> program is released as part of the StatGen Library & Tools download. <code>trimBam</code> trims the end of reads in a SAM/BAM file, chang…'
Category:BAM Software
Created page with 'Software tools that work with BAM files.'
BamUtil: trimBam
no edit summary
+26
Category:StatGen Download
Created page with 'These are the tools and library classes that are downloaded with the statgen download.'
BamUtil: trimBam
no edit summary
+24
BamUtil: trimBam
Created page with '== Trim BAM == The <code>trimBam</code> program is released as part of the StatGen Library & Tools download. <code>trimBam</code> trims the end of reads in a SAM/BAM file, chang…'
C++ Library: libStatGen
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C++ Library: libStatGen
no edit summary
+843
25 October 2010
C++ Library: libStatGen
Created page with 'To use the StatGenLibrary, first download:'
FastQValidator
no edit summary
+207
C++ Library: libfqf
moved C++ Library: libfqf to StatGenLibrary: FASTQ
LibStatGen: FASTQ
moved C++ Library: libfqf to StatGenLibrary: FASTQ
mC++ Library: libbam
moved C++ Library: libbam to StatGenLibrary: BAM
LibStatGen: BAM
moved C++ Library: libbam to StatGenLibrary: BAM
m
13 October 2010
BamUtil: filter
no edit summary
-136
BamUtil
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-643
BamUtil: validate
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-721
BamUtil
no edit summary
+520
11 October 2010
8 October 2010
30 September 2010
BamUtil: filter
no edit summary
+2,583
BamUtil: filter
no edit summary
+1,364
BamUtil: filter
no edit summary
+129
BamUtil: filter
no edit summary
+575
BamUtil: filter
no edit summary
+698
BamUtil: filter
no edit summary
+408
BamUtil: filter
no edit summary
+637
BamUtil: filter
no edit summary
+1,175
BamUtil: filter
Created page with 'Category:libbam == filter == The <code>filter</code> option on the bam executable writes the alignments filtering them by clipping ends with too high of a mismatch …'
BamUtil
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+585
BamUtil
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+271
BamUtil
no edit summary
+1,033
BamUtil
no edit summary
+100
29 September 2010
LibStatGen: BAM
no edit summary
+39
Category:C++
Created page with 'If you create a page for C++ software, add <pre>Category:C++</pre> to the bottom of the page so that it will automatically be included here.'
C++ Class: CigarRoller
Public Methods
+129
C++ Class: CigarRoller
Public Methods
+11
C++ Class: CigarRoller
Public Methods
+135
C++ Class: CigarRoller
static Methods
+14
