User contributions
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Jump to navigationJump to search- 22:31, 23 November 2014 diff hist 0 N File:FilterSumNew.png current
- 22:27, 23 November 2014 diff hist 0 N File:GcsnpcallOutNew.png current
- 22:19, 23 November 2014 diff hist +5 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 22:16, 23 November 2014 diff hist 0 N File:SnpcallStartNew.png
- 22:07, 23 November 2014 diff hist +3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 22:07, 23 November 2014 diff hist 0 N File:SnpcallDiagramNew.png
- 21:59, 23 November 2014 diff hist -2 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM List File
- 21:59, 23 November 2014 diff hist 0 N File:BamList2.png
- 21:42, 23 November 2014 diff hist 0 N File:BamList1.png current
- 21:38, 23 November 2014 diff hist +48 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM Index File
- 21:29, 23 November 2014 diff hist 0 N File:BamindexNew.png
- 21:20, 23 November 2014 diff hist -1 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM Index File
- 21:16, 23 November 2014 diff hist +13 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 21:16, 23 November 2014 diff hist -13 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Setup in person at the SeqShop Workshop
- 20:54, 23 November 2014 diff hist +137 SeqShop: December 2014
- 20:53, 23 November 2014 diff hist +86 N SeqShop: Variant Calling and Filtering for SNPs Practical Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 20:53, 23 November 2014 diff hist 0 m SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 20:52, 23 November 2014 diff hist -13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Logging Off
- 20:51, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Accessing BAMs by Position
- 20:51, 23 November 2014 diff hist 0 File:TviewNew.png Mktrost uploaded a new version of "File:TviewNew.png" current
- 20:48, 23 November 2014 diff hist 0 N File:TviewNew.png
- 19:44, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →BAM Files
- 19:43, 23 November 2014 diff hist 0 N File:BamRecNew.png current
- 19:32, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →QC Metrics
- 19:32, 23 November 2014 diff hist 0 N File:QplotpdfNew.png current
- 19:25, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →QC Metrics
- 19:23, 23 November 2014 diff hist 0 N File:QplotsNew.png current
- 19:21, 23 November 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →QC Metrics
- 19:00, 23 November 2014 diff hist +6 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Examining GotCloud Align Output
- 18:59, 23 November 2014 diff hist 0 N File:Contam1New.png current
- 18:51, 23 November 2014 diff hist 0 N File:GcalignOutMNew.png current
- 18:41, 23 November 2014 diff hist +124 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 18:39, 23 November 2014 diff hist 0 N File:GcalignStartNew.png
- 18:08, 23 November 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud Configuration File
- 18:07, 23 November 2014 diff hist 0 N File:GcConfNew.png
- 18:07, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud Configuration File
- 17:57, 23 November 2014 diff hist -9 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud FASTQ List File
- 17:56, 23 November 2014 diff hist 0 File:FqListFASTQ2.png Mktrost uploaded a new version of "File:FqListFASTQ2.png" current
- 17:55, 23 November 2014 diff hist 0 N File:FqListFASTQ2.png
- 17:01, 23 November 2014 diff hist 0 N File:FqindexNew.png current
- 16:58, 23 November 2014 diff hist +73 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud FASTQ Index File
- 16:14, 21 November 2014 diff hist +263 Nm User talk:Kjablons Welcome! current
- 16:14, 21 November 2014 diff hist +1,093 Nm User:Kjablons Creating user page for new user. current
- 14:34, 21 November 2014 diff hist 0 File:AlignDiagram.png Mktrost uploaded a new version of "File:AlignDiagram.png" current
- 14:32, 21 November 2014 diff hist +4 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 12:05, 21 November 2014 diff hist 0 File:Setup.png Mktrost uploaded a new version of "File:Setup.png"
- 11:45, 21 November 2014 diff hist +13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 11:45, 21 November 2014 diff hist -13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup in person at the SeqShop Workshop
- 10:46, 21 November 2014 diff hist +263 Nm User talk:ZhaominWu Welcome! current
- 10:46, 21 November 2014 diff hist +372 Nm User:ZhaominWu Creating user page for new user. current
- 10:45, 21 November 2014 diff hist +263 Nm User talk:Mkarhade Welcome! current
- 10:45, 21 November 2014 diff hist +390 Nm User:Mkarhade Creating user page for new user. current
- 19:30, 20 November 2014 diff hist 0 File:Bam.png Mktrost uploaded a new version of "File:Bam.png" current
- 16:33, 19 November 2014 diff hist +77 N SeqShop: Sequence Mapping and Assembly Practical Mktrost moved page SeqShop: Sequence Mapping and Assembly Practical to SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 16:33, 19 November 2014 diff hist 0 m SeqShop: Sequence Mapping and Assembly Practical, December 2014 Mktrost moved page SeqShop: Sequence Mapping and Assembly Practical to SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 14:38, 13 November 2014 diff hist +22 SeqShop: Genetic Association Analysis Practical, June 2014
- 14:38, 13 November 2014 diff hist +11 SeqShop: Estimates of Genetic Ancestry Practical, June 2014
- 14:37, 13 November 2014 diff hist +44 SeqShop: Analysis of Structural Variation Practical, June 2014 current
- 14:37, 13 November 2014 diff hist +33 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 current
- 14:36, 13 November 2014 diff hist +33 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 current
- 14:35, 13 November 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:34, 13 November 2014 diff hist +22 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:32, 13 November 2014 diff hist +203 SeqShop: Ancestry On Your Own Genome, June 2014 current
- 14:31, 13 November 2014 diff hist +2,676 N SeqShop: Ancestry On Your Own Genome, December 2014 Created page with "{{SeqShopLogin}} == Setup == Set these values. If you used a different path for any of these, please update here. Also, be sure to specify your sample name instead of Sampl..."
- 14:31, 13 November 2014 diff hist 0 m SeqShop: Ancestry On Your Own Genome, June 2014 Mktrost moved page SeqShop: Ancestry On Your Own Genome to SeqShop: Ancestry On Your Own Genome, June 2014 without leaving a redirect
- 14:31, 13 November 2014 diff hist +234 SeqShop: Friday - Practicing what we learned, June 2014 current
- 14:30, 13 November 2014 diff hist +200 SeqShop: Calling Your Own Genome, June 2014 current
- 14:30, 13 November 2014 diff hist +4,418 N SeqShop: Calling Your Own Genome, December 2014 Created page with "{{SeqShopLogin}} == Setup == Set these values. If you used a different path for any of these, please update here. Also, be sure to specify your sample name instead of Sampl..."
- 14:29, 13 November 2014 diff hist 0 m SeqShop: Calling Your Own Genome, June 2014 Mktrost moved page SeqShop: Calling Your Own Genome to SeqShop: Calling Your Own Genome, June 2014 without leaving a redirect
- 14:28, 13 November 2014 diff hist 0 m SeqShop: Friday - Practicing what we learned, June 2014 Mktrost moved page SeqShop: Friday - Practicing what we learned to SeqShop: Friday - Practicing what we learned, June 2014 without leaving a redirect
- 14:27, 13 November 2014 diff hist +19,651 N SeqShop: Genetic Association Analysis Practical, December 2014 Created page with "== Introduction == View Lecture Slides Media:Seqshop association practice 2014 06.pdf|View Introductory Slides for Practical Sessi..."
- 14:27, 13 November 2014 diff hist +233 SeqShop: Genetic Association Analysis Practical, June 2014
- 14:26, 13 November 2014 diff hist 0 m SeqShop: Genetic Association Analysis Practical, June 2014 Mktrost moved page SeqShop: Genetic Association Analysis Practical to SeqShop: Genetic Association Analysis Practical, June 2014 without leaving a redirect
- 14:26, 13 November 2014 diff hist +9,689 SeqShop: Estimates of Genetic Ancestry Practical, December 2014
- 14:26, 13 November 2014 diff hist +215 SeqShop: Estimates of Genetic Ancestry Practical, June 2014
- 14:25, 13 November 2014 diff hist +73 N SeqShop: Estimates of Genetic Ancestry Practical, December 2014 Mktrost moved page SeqShop: Estimates of Genetic Ancestry Practical to SeqShop: Estimates of Genetic Ancestry Practical, June 2014
- 14:25, 13 November 2014 diff hist 0 m SeqShop: Estimates of Genetic Ancestry Practical, June 2014 Mktrost moved page SeqShop: Estimates of Genetic Ancestry Practical to SeqShop: Estimates of Genetic Ancestry Practical, June 2014
- 14:25, 13 November 2014 diff hist +11,475 N SeqShop: Aligning Your Own Genome, December 2014 Created page with "== First Things First == *Helpful reference to many tools: ** http://infoplatter.wordpress.com/2014/04/06/bioinformaticians-pocket-reference/ *** links to "cheat-sheets", incl..."
- 14:25, 13 November 2014 diff hist +200 SeqShop: Aligning Your Own Genome, June 2014 current
- 14:24, 13 November 2014 diff hist 0 m SeqShop: Aligning Your Own Genome, June 2014 Mktrost moved page SeqShop: Aligning Your Own Genome to SeqShop: Aligning Your Own Genome, June 2014 without leaving a redirect
- 14:24, 13 November 2014 diff hist +17,120 N SeqShop: Analysis of Structural Variation Practical, December 2014 Created page with "== Goals of This Session == * What we want to learn is calling large deletions using GenomeSTRiP implemented in GotCloud pipeline ** How to prepare metadata for running Ge..."
- 14:24, 13 November 2014 diff hist +218 SeqShop: Analysis of Structural Variation Practical, June 2014
- 14:23, 13 November 2014 diff hist 0 m SeqShop: Analysis of Structural Variation Practical, June 2014 Mktrost moved page SeqShop: Analysis of Structural Variation Practical to SeqShop: Analysis of Structural Variation Practical, June 2014 without leaving a redirect
- 14:22, 13 November 2014 diff hist +226 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
- 14:22, 13 November 2014 diff hist +22,606 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 14:22, 13 November 2014 diff hist +84 N SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for INDELs Practical to SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
- 14:22, 13 November 2014 diff hist 0 m SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for INDELs Practical to SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
- 14:21, 13 November 2014 diff hist +282 SeqShop: June 2014 current
- 14:20, 13 November 2014 diff hist +1 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:20, 13 November 2014 diff hist +8 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:15, 13 November 2014 diff hist +19,674 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 14:12, 13 November 2014 diff hist +215 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:12, 13 November 2014 diff hist +214 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 14:11, 13 November 2014 diff hist +16,464 N SeqShop: Sequence Mapping and Assembly Practical, December 2014 Created page with "== Introduction == See the introductory slides for an intro to this tutorial. == Goals of This Session == * What we want to learn ** B..."
- 14:10, 13 November 2014 diff hist 0 m SeqShop: Sequence Mapping and Assembly Practical, June 2014 Mktrost moved page SeqShop: Sequence Mapping and Assembly Practical to SeqShop: Sequence Mapping and Assembly Practical, June 2014 without leaving a redirect
- 14:09, 13 November 2014 diff hist +82 N SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:09, 13 November 2014 diff hist 0 m SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:06, 13 November 2014 diff hist +1,543 N SeqShop: December 2014 Created page with "Sequence Analysis Workshop December 8-12, 2014: http://seqshop.sph.umich.edu/ {| class="wikitable" cellpadding=5 |- ! style="background:#ABE" | Monday Lecture !! style="back..."
- 14:04, 13 November 2014 diff hist +129 Short Workshops →Low Pass Whole Genomes
- 14:04, 13 November 2014 diff hist +32 N SeqShop Mktrost moved page SeqShop to SeqShop: June 2014: Multiple SeqShops current