Long pages

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  1. (hist) ‎Vt ‎[83,191 bytes]
  2. (hist) ‎Tutorial: GotCloud UW CMG ‎[47,591 bytes]
  3. (hist) ‎LocusZoom Standalone ‎[46,553 bytes]
  4. (hist) ‎Make file tutorial ‎[44,577 bytes]
  5. (hist) ‎EPACTS ‎[41,972 bytes]
  6. (hist) ‎Biostatistics 615/815 Winter 2011 ‎[37,034 bytes]
  7. (hist) ‎Rvtests ‎[29,722 bytes]
  8. (hist) ‎Tutorial: GotCloud ‎[25,601 bytes]
  9. (hist) ‎SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 ‎[24,562 bytes]
  10. (hist) ‎RAREMETAL Documentation ‎[24,426 bytes]
  11. (hist) ‎EPACTS for DIAGRAM ‎[24,397 bytes]
  12. (hist) ‎SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 ‎[22,949 bytes]
  13. (hist) ‎SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 ‎[22,623 bytes]
  14. (hist) ‎SeqShop: Genetic Association Analysis Practical, December 2014 ‎[21,679 bytes]
  15. (hist) ‎Exome Chip Design ‎[21,182 bytes]
  16. (hist) ‎SeqShop: Analysis of Structural Variation Practical, December 2014 ‎[21,097 bytes]
  17. (hist) ‎SeqShop: Association Analysis, May 2015 ‎[20,716 bytes]
  18. (hist) ‎GotCloud: Alignment Sub-Pipelines ‎[20,619 bytes]
  19. (hist) ‎VerifyBamID ‎[20,374 bytes]
  20. (hist) ‎SeqShop: Analysis of Structural Variation Practical, May 2015 ‎[20,191 bytes]
  21. (hist) ‎SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 ‎[20,035 bytes]
  22. (hist) ‎SeqShop: Genetic Association Analysis Practical, June 2014 ‎[19,884 bytes]
  23. (hist) ‎SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 ‎[19,882 bytes]
  24. (hist) ‎Code Sample: Generating Manhattan Plots in R ‎[19,872 bytes]
  25. (hist) ‎Minimac: 1000 Genomes Imputation Cookbook ‎[19,820 bytes]
  26. (hist) ‎METAL Documentation ‎[19,274 bytes]
  27. (hist) ‎LibStatGen: ASP ‎[19,239 bytes]
  28. (hist) ‎Goncalo Abecasis: Interview with Christiana Fogg ‎[19,031 bytes]
  29. (hist) ‎SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 ‎[18,988 bytes]
  30. (hist) ‎RAREMETALWORKER ‎[18,801 bytes]
  31. (hist) ‎BamUtil: stats ‎[18,759 bytes]
  32. (hist) ‎METAL Quick Start ‎[18,743 bytes]
  33. (hist) ‎GotCloud: Variant Calling Options ‎[18,674 bytes]
  34. (hist) ‎GotCloud: Versions ‎[18,528 bytes]
  35. (hist) ‎Tutorial: Low Pass Sequence Analysis ‎[18,303 bytes]
  36. (hist) ‎LibStatGen: VCF ‎[18,261 bytes]
  37. (hist) ‎SeqShop: Calling Your Own Genome, December 2014 ‎[18,145 bytes]
  38. (hist) ‎RareMETALS ‎[17,976 bytes]
  39. (hist) ‎SeqShop: Analysis of Structural Variation Practical, June 2014 ‎[17,382 bytes]
  40. (hist) ‎BamUtil ‎[17,053 bytes]
  41. (hist) ‎SeqShop: Sequence Mapping and Assembly Practical, December 2014 ‎[17,024 bytes]
  42. (hist) ‎SeqShop: Sequence Mapping and Assembly Practical, June 2014 ‎[16,675 bytes]
  43. (hist) ‎Minimac ‎[16,428 bytes]
  44. (hist) ‎SeqShop: Sequence Mapping and Assembly Practical, May 2015 ‎[16,322 bytes]
  45. (hist) ‎UMAKE ‎[16,020 bytes]
  46. (hist) ‎QPLOT ‎[15,919 bytes]
  47. (hist) ‎TrioCaller ‎[15,816 bytes]
  48. (hist) ‎GotCloud: Binary Releases ‎[15,596 bytes]
  49. (hist) ‎Using Git Example ‎[15,268 bytes]
  50. (hist) ‎Variant Normalization ‎[15,102 bytes]
  51. (hist) ‎Variant classification ‎[14,937 bytes]
  52. (hist) ‎LocusZoom ‎[14,897 bytes]
  53. (hist) ‎Sequencing Workshop Analysis of Indels ‎[14,678 bytes]
  54. (hist) ‎EMADS Primary Analysis Plan ‎[14,621 bytes]
  55. (hist) ‎StarCluster ‎[14,547 bytes]
  56. (hist) ‎LiftOver ‎[14,512 bytes]
  57. (hist) ‎VcfCodingSnps ‎[14,342 bytes]
  58. (hist) ‎TabAnno ‎[13,891 bytes]
  59. (hist) ‎GotCloud: GenomeSTRiP Pipeline ‎[13,841 bytes]
  60. (hist) ‎Karma ‎[13,824 bytes]
  61. (hist) ‎Minimac2 ‎[13,793 bytes]
  62. (hist) ‎Polymutt ‎[13,762 bytes]
  63. (hist) ‎SeqShop: Calling Your Own Genome, May 2015 ‎[13,683 bytes]
  64. (hist) ‎RareMETALS2 ‎[13,497 bytes]
  65. (hist) ‎IMPUTE2: 1000 Genomes Imputation Cookbook ‎[13,439 bytes]
  66. (hist) ‎BamUtil: recab ‎[13,115 bytes]
  67. (hist) ‎GotCloud: Alignment Pipeline ‎[12,941 bytes]
  68. (hist) ‎MaCH FAQ ‎[12,923 bytes]
  69. (hist) ‎BamUtil: bam2FastQ ‎[12,860 bytes]
  70. (hist) ‎SAM ‎[12,664 bytes]
  71. (hist) ‎LASER ‎[12,335 bytes]
  72. (hist) ‎GotCloud: FAQs ‎[12,317 bytes]
  73. (hist) ‎SardiNIA ‎[12,256 bytes]
  74. (hist) ‎SAM/BAM Convert Sequence ‎[12,164 bytes]
  75. (hist) ‎830 - MINIMAC::main() ‎[12,007 bytes]
  76. (hist) ‎BamUtil: diff ‎[11,697 bytes]
  77. (hist) ‎SeqShop: Aligning Your Own Genome, June 2014 ‎[11,675 bytes]
  78. (hist) ‎Creating an AMI on EC2 ‎[11,514 bytes]
  79. (hist) ‎FastQValidator ‎[11,473 bytes]
  80. (hist) ‎BamUtil: clipOverlap ‎[11,334 bytes]
  81. (hist) ‎Examples of Read Mapping with Karma and BWA ‎[11,316 bytes]
  82. (hist) ‎SAM Validation Criteria ‎[11,292 bytes]
  83. (hist) ‎C++ Library: libStatGen ‎[11,231 bytes]
  84. (hist) ‎Sam Library Usage Examples ‎[11,119 bytes]
  85. (hist) ‎Generic Exome Analysis Plan ‎[11,009 bytes]
  86. (hist) ‎Relationship between Ploidy, Alleles and Genotypes ‎[10,905 bytes]
  87. (hist) ‎Biostatistics 615/815 Fall 2011 ‎[10,863 bytes]
  88. (hist) ‎LibStatGen Download ‎[10,708 bytes]
  89. (hist) ‎SeqShop: Estimates of Genetic Ancestry Practical, December 2014 ‎[10,434 bytes]
  90. (hist) ‎RAREMETALWORKER command reference ‎[10,079 bytes]
  91. (hist) ‎Git FAQs ‎[10,033 bytes]
  92. (hist) ‎Minimac3 ChangeLog ‎[9,990 bytes]
  93. (hist) ‎SeqShop: Estimates of Genetic Ancestry Practical, June 2014 ‎[9,981 bytes]
  94. (hist) ‎BAM Review Action Items ‎[9,939 bytes]
  95. (hist) ‎BamUtil: filter ‎[9,889 bytes]
  96. (hist) ‎GotCloud: Creating a New Pipeline ‎[9,770 bytes]
  97. (hist) ‎VcfCooker ‎[9,700 bytes]
  98. (hist) ‎MEAGA ‎[9,305 bytes]
  99. (hist) ‎Minimac3 Usage ‎[9,218 bytes]
  100. (hist) ‎Analyses of Indels ‎[9,176 bytes]
  101. (hist) ‎Biostatistics 602: Main Page ‎[9,083 bytes]
  102. (hist) ‎BamUtil: dedup ‎[9,059 bytes]
  103. (hist) ‎Code Sample: Generating QQ Plots in R ‎[9,023 bytes]
  104. (hist) ‎Biostatistics 866: Main Page ‎[8,966 bytes]
  105. (hist) ‎GREGOR ‎[8,786 bytes]
  106. (hist) ‎Tandem Repeat Concepts ‎[8,696 bytes]
  107. (hist) ‎SeqShop: Estimates of Genetic Ancestry Practical, May 2015 ‎[8,622 bytes]
  108. (hist) ‎GotCloud: Variant Calling Pipeline ‎[8,558 bytes]
  109. (hist) ‎RAREMETAL Change Log ‎[8,544 bytes]
  110. (hist) ‎GotCloud: Genetic Reference and Resource Files ‎[8,541 bytes]
  111. (hist) ‎GotCloud ‎[8,528 bytes]
  112. (hist) ‎Biostatistics 830: Fall 2013 Edition ‎[8,505 bytes]
  113. (hist) ‎Biostatistics 615/815: Main Page ‎[8,494 bytes]
  114. (hist) ‎Minimac4 ‎[8,492 bytes]
  115. (hist) ‎GLF ‎[8,319 bytes]
  116. (hist) ‎Triodenovo ‎[8,293 bytes]
  117. (hist) ‎DosageConvertor ‎[8,125 bytes]
  118. (hist) ‎Summary Statistics Files Specification for RAREMETAL and rvtests ‎[7,974 bytes]
  119. (hist) ‎EMADS ‎[7,895 bytes]
  120. (hist) ‎Minimac3 Info File ‎[7,826 bytes]
  121. (hist) ‎Minimac4 Documentation ‎[7,817 bytes]
  122. (hist) ‎Minimac4 - Full List of Options ‎[7,698 bytes]
  123. (hist) ‎MutationFilter ‎[7,697 bytes]
  124. (hist) ‎Abecasis Lab ‎[7,633 bytes]
  125. (hist) ‎MaCH: Input Files ‎[7,624 bytes]
  126. (hist) ‎BamUtil: validate ‎[7,543 bytes]
  127. (hist) ‎BAFRegress ‎[7,492 bytes]
  128. (hist) ‎Biostatistics 830: Main Page ‎[7,367 bytes]
  129. (hist) ‎Test EPACTS for DIAGRAM ‎[7,365 bytes]
  130. (hist) ‎Minimac: Tutorial ‎[7,357 bytes]
  131. (hist) ‎Famrvtest ‎[7,338 bytes]
  132. (hist) ‎Biostatistics 666: Main Page ‎[7,303 bytes]
  133. (hist) ‎PileupBasedVariantCalling ‎[7,294 bytes]
  134. (hist) ‎Bar Harbor Statistical Genetics Workshop ‎[7,218 bytes]
  135. (hist) ‎BamUtil: trimBam ‎[7,211 bytes]
  136. (hist) ‎Tutorial: RAREMETAL ‎[7,185 bytes]
  137. (hist) ‎Karma-colorspace ‎[7,165 bytes]
  138. (hist) ‎1000 Genomes Project Pilot 1 SNP Calling ‎[7,158 bytes]
  139. (hist) ‎Minimac3 ‎[7,147 bytes]
  140. (hist) ‎Understanding VerifyBamID output ‎[6,980 bytes]
  141. (hist) ‎Variant Call Pipeline ‎[6,909 bytes]
  142. (hist) ‎EMMAX ‎[6,887 bytes]
  143. (hist) ‎Genezoom ‎[6,873 bytes]
  144. (hist) ‎ExomePicks ‎[6,843 bytes]
  145. (hist) ‎RAREMETAL FAQ ‎[6,819 bytes]
  146. (hist) ‎BamUtil: polishBam ‎[6,775 bytes]
  147. (hist) ‎Rare variant tests ‎[6,767 bytes]
  148. (hist) ‎GTDT ‎[6,661 bytes]
  149. (hist) ‎Base Caller Summaries ‎[6,473 bytes]
  150. (hist) ‎M3vcftools Usage ‎[6,472 bytes]
  151. (hist) ‎Amazon Storage ‎[6,462 bytes]
  152. (hist) ‎Bayesdenovo ‎[6,453 bytes]
  153. (hist) ‎Minimac3 Info (Older Version) ‎[6,431 bytes]
  154. (hist) ‎RAREMETAL METHOD ‎[6,333 bytes]
  155. (hist) ‎BamUtil: squeeze ‎[6,177 bytes]
  156. (hist) ‎SeqShop: Aligning Your Own Genome, December 2014 ‎[6,175 bytes]
  157. (hist) ‎RelativeFinder ‎[6,175 bytes]
  158. (hist) ‎Minimac3 - Full List of Options ‎[6,159 bytes]
  159. (hist) ‎Installing MinGW & MSYS on Windows ‎[6,107 bytes]
  160. (hist) ‎RAREMETALWORKER METHOD ‎[5,949 bytes]
  161. (hist) ‎SeqShop: Aligning Your Own Genome, May 2015 ‎[5,922 bytes]
  162. (hist) ‎Minimac3 Imputation Cookbook ‎[5,905 bytes]
  163. (hist) ‎Tutorial: Low Pass Sequence Analysis Answers ‎[5,822 bytes]
  164. (hist) ‎BamUtil: writeRegion ‎[5,807 bytes]
  165. (hist) ‎VICES ‎[5,784 bytes]
  166. (hist) ‎M3VCF Files ‎[5,766 bytes]
  167. (hist) ‎Sequence Analysis Practice 2011/03/09 ‎[5,675 bytes]
  168. (hist) ‎GotCloud: Amazon Demo ‎[5,646 bytes]
  169. (hist) ‎MaCH: 1000 Genomes Imputation Cookbook ‎[5,646 bytes]
  170. (hist) ‎Using Gotcloud on Flux ‎[5,632 bytes]
  171. (hist) ‎C++ Class: CigarRoller ‎[5,541 bytes]
  172. (hist) ‎BamUtil: dumpAsp ‎[5,510 bytes]
  173. (hist) ‎SeqShop: Ancestry On Your Own Genome, December 2014 ‎[5,460 bytes]
  174. (hist) ‎C++ Library: general Change Log ‎[5,357 bytes]
  175. (hist) ‎Minimac3 Examples ‎[5,298 bytes]
  176. (hist) ‎BamUtil: convert ‎[5,265 bytes]
  177. (hist) ‎BamUtil: gapInfo ‎[5,230 bytes]
  178. (hist) ‎Minimac3 Cookbook : Chromosome X Imputation ‎[5,141 bytes]
  179. (hist) ‎Understanding vcf-summary output ‎[5,050 bytes]
  180. (hist) ‎Vmatch ‎[4,975 bytes]
  181. (hist) ‎CigarRoller Proposed Update ‎[4,960 bytes]
  182. (hist) ‎CalcMatch ‎[4,883 bytes]
  183. (hist) ‎An example of using libcsg ‎[4,824 bytes]
  184. (hist) ‎SeqShop: Ancestry On Your Own Genome, May 2015 ‎[4,819 bytes]
  185. (hist) ‎Meta Analysis of SNPxEnvironment Interaction ‎[4,679 bytes]
  186. (hist) ‎Garlic ‎[4,629 bytes]
  187. (hist) ‎SeqShop: Calling Your Own Genome, June 2014 ‎[4,618 bytes]
  188. (hist) ‎StatsTools ‎[4,596 bytes]
  189. (hist) ‎GotCloud: Filters ‎[4,563 bytes]
  190. (hist) ‎Verifying Sample Identities - Implementation ‎[4,546 bytes]
  191. (hist) ‎RvTests ‎[4,498 bytes]
  192. (hist) ‎SardiNIA project meeting July 15-16, 2013 ‎[4,443 bytes]
  193. (hist) ‎Arf ‎[4,318 bytes]
  194. (hist) ‎Better X Sessions from Home (NX) ‎[4,258 bytes]
  195. (hist) ‎GotCloud: Source Releases ‎[4,253 bytes]
  196. (hist) ‎Polymutt2 ‎[4,231 bytes]
  197. (hist) ‎BamUtil: indelDiscordance ‎[4,231 bytes]
  198. (hist) ‎C++ Class: SamFile ‎[4,217 bytes]
  199. (hist) ‎Biostatistics 815 Term Project ‎[4,204 bytes]
  200. (hist) ‎BamUtil: asp ‎[4,184 bytes]
  201. (hist) ‎LiftMap.py ‎[4,134 bytes]
  202. (hist) ‎CheckVCF.py ‎[4,096 bytes]
  203. (hist) ‎Regions of high linkage disequilibrium (LD) ‎[4,095 bytes]
  204. (hist) ‎Bam read count ‎[4,083 bytes]
  205. (hist) ‎Amazon Single Node ‎[4,078 bytes]
  206. (hist) ‎Amazon Snapshot ‎[4,077 bytes]
  207. (hist) ‎Thunder ‎[4,073 bytes]
  208. (hist) ‎GBR60vc.conf ‎[4,052 bytes]
  209. (hist) ‎Minimac Command Reference ‎[4,022 bytes]
  210. (hist) ‎Ancestry ‎[3,974 bytes]
  211. (hist) ‎BamUtil: FAQ ‎[3,933 bytes]
  212. (hist) ‎Tutorial: EMMAX GotCloud STOM: Lecture 2 ‎[3,906 bytes]
  213. (hist) ‎LibStatGen: BAM ‎[3,857 bytes]
  214. (hist) ‎Haploxt ‎[3,849 bytes]
  215. (hist) ‎C++ Class: FastQFile ‎[3,837 bytes]
  216. (hist) ‎Debuggers ‎[3,820 bytes]
  217. (hist) ‎Minimac3 Cookbook : Pre-Phasing ‎[3,739 bytes]
  218. (hist) ‎GlfTrio ‎[3,739 bytes]
  219. (hist) ‎GlfMultiples ‎[3,724 bytes]
  220. (hist) ‎SAM: Filtering Reads ‎[3,662 bytes]
  221. (hist) ‎GotCloud: RedHat Package ‎[3,633 bytes]
  222. (hist) ‎SplitPed ‎[3,614 bytes]
  223. (hist) ‎BamUtil: mergeBam ‎[3,601 bytes]
  224. (hist) ‎M3vcftools ‎[3,571 bytes]
  225. (hist) ‎FastQ Validation Criteria ‎[3,548 bytes]
  226. (hist) ‎RAREFY DOCUMENTATION ‎[3,545 bytes]
  227. (hist) ‎BamGenotypeCheck ‎[3,529 bytes]
  228. (hist) ‎Biostatistics 501: Main Page ‎[3,495 bytes]
  229. (hist) ‎Software ‎[3,495 bytes]
  230. (hist) ‎RAREFY COMMAND ‎[3,494 bytes]
  231. (hist) ‎SeqShop: December 2014 ‎[3,406 bytes]
  232. (hist) ‎FamLDCaller ‎[3,270 bytes]
  233. (hist) ‎SNP Call Set Properties ‎[3,258 bytes]
  234. (hist) ‎MappabilityScores ‎[3,236 bytes]
  235. (hist) ‎SeqShop: May 2015 ‎[3,209 bytes]
  236. (hist) ‎BamUtil: revert ‎[3,158 bytes]
  237. (hist) ‎Tutorial: EMMAX GotCloud STOM: Lecture 6 ‎[3,130 bytes]
  238. (hist) ‎Mount S3 Volume ‎[3,106 bytes]
  239. (hist) ‎ChunkChromosome ‎[3,106 bytes]
  240. (hist) ‎UMAKE-glfSingle ‎[3,105 bytes]
  241. (hist) ‎GotCloud: Configuration ‎[3,096 bytes]
  242. (hist) ‎GlfSingle ‎[3,005 bytes]
  243. (hist) ‎Pileup ‎[2,975 bytes]
  244. (hist) ‎LibStatGen Troubleshooting ‎[2,966 bytes]
  245. (hist) ‎TinySimulator ‎[2,957 bytes]
  246. (hist) ‎RAREMETALWORKER SPECIAL TOPICS ‎[2,950 bytes]
  247. (hist) ‎Creating a Snapshot on EC2 ‎[2,944 bytes]
  248. (hist) ‎Genotype Likelihood based Allele Frequency ‎[2,912 bytes]
  249. (hist) ‎New Fugue ‎[2,898 bytes]
  250. (hist) ‎SeqShop: Ancestry On Your Own Genome, June 2014 ‎[2,879 bytes]

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