Popular pages

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  1. Main Page‏‎ (1,245,207 views)
  2. SAM‏‎ (407,279 views)
  3. Minimac‏‎ (390,316 views)
  4. Vt‏‎ (380,823 views)
  5. EPACTS‏‎ (298,413 views)
  6. Abecasis Lab‏‎ (268,426 views)
  7. METAL Documentation‏‎ (252,133 views)
  8. Biostatistics 666: Main Page‏‎ (226,462 views)
  9. BamUtil‏‎ (224,747 views)
  10. LiftOver‏‎ (223,158 views)
  11. RAREMETALWORKER‏‎ (215,302 views)
  12. VerifyBamID‏‎ (212,176 views)
  13. Polymutt‏‎ (201,251 views)
  14. Installing MinGW & MSYS on Windows‏‎ (201,175 views)
  15. LocusZoom Standalone‏‎ (196,416 views)
  16. Variant Normalization‏‎ (195,514 views)
  17. Minimac3‏‎ (181,454 views)
  18. RAREMETAL Documentation‏‎ (178,880 views)
  19. BAM‏‎ (178,196 views)
  20. GotCloud‏‎ (147,146 views)
  21. FastQValidator‏‎ (140,845 views)
  22. Biostatistics 602: Main Page‏‎ (139,564 views)
  23. IMPUTE2: 1000 Genomes Imputation Cookbook‏‎ (125,918 views)
  24. Exome Chip Design‏‎ (122,216 views)
  25. QPLOT‏‎ (121,211 views)
  26. LocusZoom‏‎ (119,189 views)
  27. MaCH‏‎ (117,228 views)
  28. Minimac: 1000 Genomes Imputation Cookbook‏‎ (112,448 views)
  29. Biostatistics 615/815: Main Page‏‎ (111,979 views)
  30. EMADS‏‎ (101,677 views)
  31. Code Sample: Generating Manhattan Plots in R‏‎ (101,248 views)
  32. VcfCodingSnps‏‎ (100,272 views)
  33. DosageConvertor‏‎ (100,229 views)
  34. Biostatistics 830: Main Page‏‎ (96,317 views)
  35. Minimac4‏‎ (95,502 views)
  36. Tutorial: Low Pass Sequence Analysis‏‎ (94,587 views)
  37. Tutorial: GotCloud‏‎ (92,971 views)
  38. Software‏‎ (92,327 views)
  39. EMMAX‏‎ (89,056 views)
  40. Variant classification‏‎ (88,715 views)
  41. RAREMETAL‏‎ (88,320 views)
  42. Mapping Quality Scores‏‎ (85,103 views)
  43. METAL‏‎ (84,211 views)
  44. RareMETALS‏‎ (83,659 views)
  45. Famrvtest‏‎ (83,137 views)
  46. SeqShop: Calling Your Own Genome, December 2014‏‎ (82,011 views)
  47. Minimac2‏‎ (80,991 views)
  48. METAL Quick Start‏‎ (80,065 views)
  49. Triodenovo‏‎ (77,509 views)
  50. MaCH FAQ‏‎ (75,915 views)
  51. TrioCaller‏‎ (73,956 views)
  52. C++ Library: libStatGen‏‎ (72,162 views)
  53. LASER‏‎ (71,858 views)
  54. SardiNIA‏‎ (71,657 views)
  55. UMAKE‏‎ (69,745 views)
  56. Minimac3 Imputation Cookbook‏‎ (66,271 views)
  57. Biostatistics 866: Main Page‏‎ (63,451 views)
  58. GREGOR‏‎ (63,236 views)
  59. Minimac3 Info File‏‎ (62,014 views)
  60. RAREMETAL DOWNLOAD & BUILD‏‎ (61,809 views)
  61. EMADS Primary Analysis Plan‏‎ (61,408 views)
  62. SNP Call Set Properties‏‎ (59,634 views)
  63. Code Sample: Generating QQ Plots in R‏‎ (58,131 views)
  64. Thunder‏‎ (56,938 views)
  65. GotCloud: Variant Calling Pipeline‏‎ (56,413 views)
  66. SeqShop: Calling Your Own Genome, May 2015‏‎ (56,338 views)
  67. EPACTS for DIAGRAM‏‎ (55,890 views)
  68. SEQMIX‏‎ (54,857 views)
  69. RAREMETALWORKER METHOD‏‎ (53,887 views)
  70. LibStatGen: BAM‏‎ (53,548 views)
  71. GotCloud: Binary Releases‏‎ (53,140 views)
  72. BamUtil: trimBam‏‎ (52,735 views)
  73. BamUtil: stats‏‎ (52,733 views)
  74. BamUtil: bam2FastQ‏‎ (52,663 views)
  75. BamUtil: validate‏‎ (52,604 views)
  76. Rvtests‏‎ (50,320 views)
  77. BamUtil: dedup‏‎ (50,010 views)
  78. Biostatistics 615/815 Fall 2011‏‎ (49,718 views)
  79. Tutorial: RAREMETAL‏‎ (48,907 views)
  80. SeqShop: Analysis of Structural Variation Practical, June 2014‏‎ (48,533 views)
  81. LibStatGen: FASTQ‏‎ (47,772 views)
  82. RvTests‏‎ (47,320 views)
  83. LibStatGen Download‏‎ (46,312 views)
  84. Generic Exome Analysis Plan‏‎ (46,269 views)
  85. SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014‏‎ (44,950 views)
  86. GlfMultiples‏‎ (44,185 views)
  87. FTEC‏‎ (44,084 views)
  88. GotCloud: Alignment Pipeline‏‎ (44,005 views)
  89. RAREMETAL METHOD‏‎ (43,895 views)
  90. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014‏‎ (42,261 views)
  91. BamUtil: clipOverlap‏‎ (42,249 views)
  92. Short Workshops‏‎ (42,062 views)
  93. SeqShop: Analysis of Structural Variation Practical, December 2014‏‎ (41,190 views)
  94. VcfCooker‏‎ (39,737 views)
  95. Minimac3 Usage‏‎ (39,194 views)
  96. Creating an AMI on EC2‏‎ (37,721 views)
  97. RareMETALS2‏‎ (37,297 views)
  98. Relationship between Ploidy, Alleles and Genotypes‏‎ (36,689 views)
  99. Bam read count‏‎ (36,521 views)
  100. GotCloud: Genetic Reference and Resource Files‏‎ (36,410 views)
  101. Rare variant tests‏‎ (36,055 views)
  102. Arf‏‎ (35,765 views)
  103. ExomePicks‏‎ (35,746 views)
  104. SeqShop: Estimates of Genetic Ancestry Practical, December 2014‏‎ (35,744 views)
  105. SeqShop: Sequence Mapping and Assembly Practical, June 2014‏‎ (35,707 views)
  106. SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015‏‎ (35,408 views)
  107. BamUtil: writeRegion‏‎ (35,132 views)
  108. RAREMETALWORKER command reference‏‎ (34,677 views)
  109. SeqShop: Sequence Mapping and Assembly Practical, December 2014‏‎ (34,600 views)
  110. BamUtil: convert‏‎ (34,437 views)
  111. Karma‏‎ (34,078 views)
  112. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014‏‎ (33,914 views)
  113. GlfSingle‏‎ (33,650 views)
  114. MEAGA‏‎ (33,509 views)
  115. BamUtil: diff‏‎ (33,330 views)
  116. BamUtil: filter‏‎ (32,547 views)
  117. SeqShop: May 2015‏‎ (32,381 views)
  118. METAL Command Reference‏‎ (32,035 views)
  119. GTDT‏‎ (32,019 views)
  120. SeqShop: Sequence Mapping and Assembly Practical, May 2015‏‎ (31,755 views)
  121. SeqShop: Estimates of Genetic Ancestry Practical, June 2014‏‎ (31,232 views)
  122. StarCluster‏‎ (31,179 views)
  123. GotCloud: Alignment Sub-Pipelines‏‎ (30,382 views)
  124. BamUtil: recab‏‎ (30,242 views)
  125. Shuang Feng‏‎ (29,719 views)
  126. MaCH: 1000 Genomes Imputation Cookbook‏‎ (29,640 views)
  127. BamGenotypeCheck‏‎ (29,330 views)
  128. RAREFY COMMAND‏‎ (28,683 views)
  129. BAFRegress‏‎ (28,506 views)
  130. ChunkChromosome‏‎ (28,197 views)
  131. Amazon Snapshot‏‎ (28,010 views)
  132. GLF‏‎ (27,273 views)
  133. Polymutt2‏‎ (27,205 views)
  134. Abecasis Group Awards‏‎ (27,008 views)
  135. RAREFY‏‎ (26,646 views)
  136. Minimac: Tutorial‏‎ (26,448 views)
  137. SeqShop: Analysis of Structural Variation Practical, May 2015‏‎ (26,322 views)
  138. Releasing GotCloud‏‎ (26,310 views)
  139. GotCloud: Versions‏‎ (26,011 views)
  140. SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015‏‎ (25,865 views)
  141. Rare Variant Analysis and Meta-Analysis‏‎ (25,290 views)
  142. SeqShop: December 2014‏‎ (25,076 views)
  143. Bar Harbor Statistical Genetics Workshop‏‎ (24,985 views)
  144. SeqShop: Ancestry On Your Own Genome, December 2014‏‎ (24,900 views)
  145. Evaluating a Read Mapper on Simulated Data‏‎ (24,680 views)
  146. C++ Class: SamFile‏‎ (24,645 views)
  147. Class Notes‏‎ (24,533 views)
  148. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014‏‎ (24,158 views)
  149. BamUtil: mergeBam‏‎ (24,076 views)
  150. CSG Tech Talks‏‎ (24,054 views)
  151. How To Use Git‏‎ (23,849 views)
  152. BamUtil: polishBam‏‎ (23,361 views)
  153. SeqShop: Genetic Association Analysis Practical, December 2014‏‎ (23,228 views)
  154. Regions of high linkage disequilibrium (LD)‏‎ (23,188 views)
  155. SAM Validation Criteria‏‎ (23,174 views)
  156. Using Git Example‏‎ (22,545 views)
  157. Vmatch‏‎ (22,456 views)
  158. RAREMETAL FAQ‏‎ (22,212 views)
  159. GotCloud: FAQs‏‎ (21,866 views)
  160. RAREMETAL Change Log‏‎ (21,782 views)
  161. Base Caller Summaries‏‎ (21,655 views)
  162. RAREFY DOCUMENTATION‏‎ (21,611 views)
  163. Karma-colorspace‏‎ (21,212 views)
  164. Creating a Snapshot on EC2‏‎ (21,196 views)
  165. Minimac3 Cookbook : Converting Files to VCF‏‎ (21,068 views)
  166. Power Calculations: Quantitative Traits‏‎ (20,884 views)
  167. BamUtil: splitBam‏‎ (20,524 views)
  168. Tutorial: GotCloud UW CMG‏‎ (20,447 views)
  169. Biostatistics 830 - Code Snippets‏‎ (20,193 views)
  170. BAM Review Action Items‏‎ (20,140 views)
  171. Minimac Command Reference‏‎ (20,028 views)
  172. SeqShop: Aligning Your Own Genome, December 2014‏‎ (19,957 views)
  173. Verifying Sample Identities - Implementation‏‎ (19,594 views)
  174. GotCloud: GenomeSTRiP Pipeline‏‎ (19,349 views)
  175. Minimac4 Documentation‏‎ (19,194 views)
  176. Minimac3 ChangeLog‏‎ (19,144 views)
  177. Make file tutorial‏‎ (19,125 views)
  178. SeqShop: Ancestry On Your Own Genome, May 2015‏‎ (19,088 views)
  179. New Fugue‏‎ (18,979 views)
  180. Git FAQs‏‎ (18,973 views)
  181. SeqShop: June 2014‏‎ (18,948 views)
  182. METAL FAQ‏‎ (18,831 views)
  183. Genezoom‏‎ (18,592 views)
  184. Indel‏‎ (18,509 views)
  185. RAREMETAL Command Reference‏‎ (18,467 views)
  186. Minimac3 Cookbook : Chromosome X Imputation‏‎ (18,038 views)
  187. GotCloud: Creating a New Pipeline‏‎ (17,930 views)
  188. Sequence Analysis Practice 2011/03/09‏‎ (17,905 views)
  189. Introduction to new students‏‎ (17,869 views)
  190. Goncalo Abecasis‏‎ (17,508 views)
  191. LibStatGen: VCF‏‎ (17,446 views)
  192. Minimac3 Examples‏‎ (17,403 views)
  193. Mach2dat: Association with MACH output‏‎ (17,394 views)
  194. Amazon Storage‏‎ (17,338 views)
  195. SeqShop: Genetic Association Analysis Practical, June 2014‏‎ (17,326 views)
  196. Biostatistics 666: Rare Variant Burden Tests‏‎ (17,169 views)
  197. GlfTrio‏‎ (17,063 views)
  198. Tutorial: EMMAX GotCloud STOM‏‎ (17,009 views)
  199. VerifyIDintensity‏‎ (16,947 views)
  200. GotCloud: Amazon Demo‏‎ (16,841 views)
  201. Summary Statistics Files Specification for RAREMETAL and rvtests‏‎ (16,719 views)
  202. Debuggers‏‎ (16,462 views)
  203. Basic Linux Intro‏‎ (16,318 views)
  204. VICES‏‎ (16,106 views)
  205. LibStatGen Troubleshooting‏‎ (16,101 views)
  206. NHLBI Informatics Resource‏‎ (15,920 views)
  207. Sean Caron‏‎ (15,761 views)
  208. MaCH: Input Files‏‎ (15,578 views)
  209. Understanding vcf-summary output‏‎ (15,385 views)
  210. C++ Class: CigarRoller‏‎ (15,212 views)
  211. LibStatGen: ASP‏‎ (15,115 views)
  212. Examples of Read Mapping with Karma and BWA‏‎ (15,009 views)
  213. M3VCF Files‏‎ (14,994 views)
  214. TabAnno‏‎ (14,874 views)
  215. MaCH: machX‏‎ (14,783 views)
  216. CalcMatch‏‎ (14,600 views)
  217. RAREFY DOWNLOAD‏‎ (14,529 views)
  218. SplitPed‏‎ (14,520 views)
  219. RelativeFinder‏‎ (14,405 views)
  220. RAREMETALWORKER SPECIAL TOPICS‏‎ (14,316 views)
  221. Dajiang Liu‏‎ (14,272 views)
  222. BamUtil: splitChromosome‏‎ (14,042 views)
  223. Computer How-Tos‏‎ (13,979 views)
  224. 1000 Genomes Project Pilot 1 SNP Calling‏‎ (13,893 views)
  225. GotCloud: Source Releases‏‎ (13,886 views)
  226. Mach DAC‏‎ (13,871 views)
  227. Understanding VerifyBamID output‏‎ (13,833 views)
  228. BamUtil: squeeze‏‎ (13,799 views)
  229. LibStatGen: general‏‎ (13,759 views)
  230. Haploxt‏‎ (13,597 views)
  231. Tutorial: Low Pass Sequence Analysis Answers‏‎ (13,448 views)
  232. RAREFY TUTORIAL‏‎ (13,346 views)
  233. Stouffer Method for Meta-Analysis‏‎ (13,271 views)
  234. ContaminationDetection‏‎ (13,261 views)
  235. GotCloud: Variant Calling Options‏‎ (13,165 views)
  236. Samtools-hybrid‏‎ (13,038 views)
  237. C++ Class: SamFileHeader‏‎ (13,032 views)
  238. Phred scale‏‎ (13,024 views)
  239. LiftMap.py‏‎ (12,961 views)
  240. CheckVCF.py‏‎ (12,910 views)
  241. Pileup‏‎ (12,744 views)
  242. Biostatistics 666: Linkage Disequilibrium‏‎ (12,721 views)
  243. BamUtil: revert‏‎ (12,549 views)
  244. Genotype Likelihood based Allele Frequency‏‎ (12,471 views)
  245. MutationFilter‏‎ (12,363 views)
  246. Minimac3 - Full List of Options‏‎ (12,353 views)
  247. Test EPACTS for DIAGRAM‏‎ (12,292 views)
  248. FastQ Validation Criteria‏‎ (12,269 views)
  249. Raremetal Incoming updates‏‎ (12,236 views)
  250. Minimac3 Cookbook : Pre-Phasing‏‎ (12,023 views)

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