Popular pages

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  1. Main Page‏‎ (1,254,960 views)
  2. SAM‏‎ (407,395 views)
  3. Minimac‏‎ (391,006 views)
  4. Vt‏‎ (382,205 views)
  5. EPACTS‏‎ (298,813 views)
  6. Abecasis Lab‏‎ (268,750 views)
  7. METAL Documentation‏‎ (252,224 views)
  8. Biostatistics 666: Main Page‏‎ (226,903 views)
  9. BamUtil‏‎ (225,290 views)
  10. LiftOver‏‎ (223,229 views)
  11. RAREMETALWORKER‏‎ (216,352 views)
  12. VerifyBamID‏‎ (212,497 views)
  13. Polymutt‏‎ (201,683 views)
  14. Installing MinGW & MSYS on Windows‏‎ (201,228 views)
  15. LocusZoom Standalone‏‎ (196,639 views)
  16. Variant Normalization‏‎ (195,795 views)
  17. Minimac3‏‎ (181,854 views)
  18. RAREMETAL Documentation‏‎ (180,009 views)
  19. BAM‏‎ (178,216 views)
  20. GotCloud‏‎ (147,549 views)
  21. FastQValidator‏‎ (141,220 views)
  22. Biostatistics 602: Main Page‏‎ (139,692 views)
  23. IMPUTE2: 1000 Genomes Imputation Cookbook‏‎ (126,020 views)
  24. Exome Chip Design‏‎ (122,409 views)
  25. QPLOT‏‎ (121,573 views)
  26. LocusZoom‏‎ (119,475 views)
  27. MaCH‏‎ (117,468 views)
  28. Minimac: 1000 Genomes Imputation Cookbook‏‎ (112,711 views)
  29. Biostatistics 615/815: Main Page‏‎ (112,170 views)
  30. EMADS‏‎ (101,805 views)
  31. Code Sample: Generating Manhattan Plots in R‏‎ (101,282 views)
  32. VcfCodingSnps‏‎ (100,536 views)
  33. DosageConvertor‏‎ (100,349 views)
  34. Biostatistics 830: Main Page‏‎ (96,476 views)
  35. Minimac4‏‎ (95,717 views)
  36. Tutorial: Low Pass Sequence Analysis‏‎ (94,765 views)
  37. Tutorial: GotCloud‏‎ (93,132 views)
  38. Software‏‎ (92,605 views)
  39. EMMAX‏‎ (89,117 views)
  40. Variant classification‏‎ (89,034 views)
  41. RAREMETAL‏‎ (88,643 views)
  42. Mapping Quality Scores‏‎ (85,159 views)
  43. METAL‏‎ (84,281 views)
  44. RareMETALS‏‎ (83,993 views)
  45. Famrvtest‏‎ (83,380 views)
  46. SeqShop: Calling Your Own Genome, December 2014‏‎ (82,172 views)
  47. Minimac2‏‎ (81,107 views)
  48. METAL Quick Start‏‎ (80,079 views)
  49. Triodenovo‏‎ (77,625 views)
  50. MaCH FAQ‏‎ (76,076 views)
  51. TrioCaller‏‎ (74,171 views)
  52. C++ Library: libStatGen‏‎ (72,367 views)
  53. LASER‏‎ (72,008 views)
  54. SardiNIA‏‎ (71,787 views)
  55. UMAKE‏‎ (69,841 views)
  56. Minimac3 Imputation Cookbook‏‎ (66,290 views)
  57. Biostatistics 866: Main Page‏‎ (63,545 views)
  58. GREGOR‏‎ (63,349 views)
  59. RAREMETAL DOWNLOAD & BUILD‏‎ (62,299 views)
  60. Minimac3 Info File‏‎ (62,027 views)
  61. EMADS Primary Analysis Plan‏‎ (61,479 views)
  62. SNP Call Set Properties‏‎ (59,647 views)
  63. Code Sample: Generating QQ Plots in R‏‎ (58,163 views)
  64. Thunder‏‎ (57,084 views)
  65. SeqShop: Calling Your Own Genome, May 2015‏‎ (56,507 views)
  66. GotCloud: Variant Calling Pipeline‏‎ (56,493 views)
  67. EPACTS for DIAGRAM‏‎ (55,955 views)
  68. SEQMIX‏‎ (55,015 views)
  69. RAREMETALWORKER METHOD‏‎ (54,230 views)
  70. LibStatGen: BAM‏‎ (53,773 views)
  71. GotCloud: Binary Releases‏‎ (53,213 views)
  72. BamUtil: trimBam‏‎ (52,821 views)
  73. BamUtil: stats‏‎ (52,800 views)
  74. BamUtil: validate‏‎ (52,722 views)
  75. BamUtil: bam2FastQ‏‎ (52,718 views)
  76. Rvtests‏‎ (50,339 views)
  77. BamUtil: dedup‏‎ (50,069 views)
  78. Biostatistics 615/815 Fall 2011‏‎ (49,872 views)
  79. Tutorial: RAREMETAL‏‎ (49,036 views)
  80. SeqShop: Analysis of Structural Variation Practical, June 2014‏‎ (48,631 views)
  81. LibStatGen: FASTQ‏‎ (47,930 views)
  82. RvTests‏‎ (47,389 views)
  83. LibStatGen Download‏‎ (46,377 views)
  84. Generic Exome Analysis Plan‏‎ (46,304 views)
  85. SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014‏‎ (45,015 views)
  86. RAREMETAL METHOD‏‎ (44,467 views)
  87. FTEC‏‎ (44,331 views)
  88. GlfMultiples‏‎ (44,239 views)
  89. GotCloud: Alignment Pipeline‏‎ (44,115 views)
  90. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014‏‎ (42,518 views)
  91. BamUtil: clipOverlap‏‎ (42,366 views)
  92. Short Workshops‏‎ (42,144 views)
  93. SeqShop: Analysis of Structural Variation Practical, December 2014‏‎ (41,310 views)
  94. VcfCooker‏‎ (39,761 views)
  95. Minimac3 Usage‏‎ (39,268 views)
  96. Creating an AMI on EC2‏‎ (37,799 views)
  97. RareMETALS2‏‎ (37,418 views)
  98. Relationship between Ploidy, Alleles and Genotypes‏‎ (36,928 views)
  99. GotCloud: Genetic Reference and Resource Files‏‎ (36,584 views)
  100. Bam read count‏‎ (36,542 views)
  101. Rare variant tests‏‎ (36,078 views)
  102. ExomePicks‏‎ (35,832 views)
  103. Arf‏‎ (35,832 views)
  104. SeqShop: Estimates of Genetic Ancestry Practical, December 2014‏‎ (35,803 views)
  105. SeqShop: Sequence Mapping and Assembly Practical, June 2014‏‎ (35,782 views)
  106. SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015‏‎ (35,431 views)
  107. BamUtil: writeRegion‏‎ (35,156 views)
  108. RAREMETALWORKER command reference‏‎ (34,778 views)
  109. SeqShop: Sequence Mapping and Assembly Practical, December 2014‏‎ (34,653 views)
  110. BamUtil: convert‏‎ (34,472 views)
  111. Karma‏‎ (34,168 views)
  112. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014‏‎ (34,002 views)
  113. GlfSingle‏‎ (33,713 views)
  114. MEAGA‏‎ (33,558 views)
  115. BamUtil: diff‏‎ (33,339 views)
  116. BamUtil: filter‏‎ (32,577 views)
  117. SeqShop: May 2015‏‎ (32,495 views)
  118. GTDT‏‎ (32,070 views)
  119. METAL Command Reference‏‎ (32,049 views)
  120. SeqShop: Sequence Mapping and Assembly Practical, May 2015‏‎ (31,788 views)
  121. SeqShop: Estimates of Genetic Ancestry Practical, June 2014‏‎ (31,325 views)
  122. StarCluster‏‎ (31,263 views)
  123. GotCloud: Alignment Sub-Pipelines‏‎ (30,448 views)
  124. BamUtil: recab‏‎ (30,335 views)
  125. Shuang Feng‏‎ (29,838 views)
  126. MaCH: 1000 Genomes Imputation Cookbook‏‎ (29,662 views)
  127. BamGenotypeCheck‏‎ (29,401 views)
  128. RAREFY COMMAND‏‎ (28,775 views)
  129. BAFRegress‏‎ (28,550 views)
  130. ChunkChromosome‏‎ (28,282 views)
  131. Amazon Snapshot‏‎ (28,083 views)
  132. GLF‏‎ (27,292 views)
  133. Polymutt2‏‎ (27,230 views)
  134. Abecasis Group Awards‏‎ (27,058 views)
  135. RAREFY‏‎ (26,720 views)
  136. Minimac: Tutorial‏‎ (26,482 views)
  137. SeqShop: Analysis of Structural Variation Practical, May 2015‏‎ (26,377 views)
  138. Releasing GotCloud‏‎ (26,355 views)
  139. GotCloud: Versions‏‎ (26,047 views)
  140. SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015‏‎ (25,885 views)
  141. Rare Variant Analysis and Meta-Analysis‏‎ (25,301 views)
  142. SeqShop: December 2014‏‎ (25,141 views)
  143. SeqShop: Ancestry On Your Own Genome, December 2014‏‎ (24,994 views)
  144. Bar Harbor Statistical Genetics Workshop‏‎ (24,989 views)
  145. Evaluating a Read Mapper on Simulated Data‏‎ (24,745 views)
  146. C++ Class: SamFile‏‎ (24,702 views)
  147. Class Notes‏‎ (24,569 views)
  148. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014‏‎ (24,205 views)
  149. CSG Tech Talks‏‎ (24,103 views)
  150. BamUtil: mergeBam‏‎ (24,097 views)
  151. How To Use Git‏‎ (23,868 views)
  152. BamUtil: polishBam‏‎ (23,416 views)
  153. SeqShop: Genetic Association Analysis Practical, December 2014‏‎ (23,254 views)
  154. SAM Validation Criteria‏‎ (23,229 views)
  155. Regions of high linkage disequilibrium (LD)‏‎ (23,218 views)
  156. Using Git Example‏‎ (22,643 views)
  157. Vmatch‏‎ (22,512 views)
  158. RAREMETAL FAQ‏‎ (22,363 views)
  159. GotCloud: FAQs‏‎ (21,900 views)
  160. RAREMETAL Change Log‏‎ (21,818 views)
  161. RAREFY DOCUMENTATION‏‎ (21,686 views)
  162. Base Caller Summaries‏‎ (21,665 views)
  163. Karma-colorspace‏‎ (21,269 views)
  164. Creating a Snapshot on EC2‏‎ (21,226 views)
  165. Minimac3 Cookbook : Converting Files to VCF‏‎ (21,087 views)
  166. Power Calculations: Quantitative Traits‏‎ (20,890 views)
  167. BamUtil: splitBam‏‎ (20,558 views)
  168. Tutorial: GotCloud UW CMG‏‎ (20,481 views)
  169. Biostatistics 830 - Code Snippets‏‎ (20,276 views)
  170. BAM Review Action Items‏‎ (20,209 views)
  171. Minimac Command Reference‏‎ (20,072 views)
  172. SeqShop: Aligning Your Own Genome, December 2014‏‎ (19,981 views)
  173. Verifying Sample Identities - Implementation‏‎ (19,620 views)
  174. GotCloud: GenomeSTRiP Pipeline‏‎ (19,386 views)
  175. Minimac3 ChangeLog‏‎ (19,225 views)
  176. Minimac4 Documentation‏‎ (19,216 views)
  177. Make file tutorial‏‎ (19,185 views)
  178. SeqShop: Ancestry On Your Own Genome, May 2015‏‎ (19,154 views)
  179. SeqShop: June 2014‏‎ (19,027 views)
  180. Git FAQs‏‎ (19,007 views)
  181. New Fugue‏‎ (18,993 views)
  182. METAL FAQ‏‎ (18,858 views)
  183. Genezoom‏‎ (18,663 views)
  184. RAREMETAL Command Reference‏‎ (18,599 views)
  185. Indel‏‎ (18,514 views)
  186. Minimac3 Cookbook : Chromosome X Imputation‏‎ (18,067 views)
  187. GotCloud: Creating a New Pipeline‏‎ (17,968 views)
  188. Sequence Analysis Practice 2011/03/09‏‎ (17,908 views)
  189. Introduction to new students‏‎ (17,907 views)
  190. Goncalo Abecasis‏‎ (17,515 views)
  191. LibStatGen: VCF‏‎ (17,515 views)
  192. Amazon Storage‏‎ (17,410 views)
  193. Minimac3 Examples‏‎ (17,409 views)
  194. Mach2dat: Association with MACH output‏‎ (17,402 views)
  195. SeqShop: Genetic Association Analysis Practical, June 2014‏‎ (17,359 views)
  196. Biostatistics 666: Rare Variant Burden Tests‏‎ (17,179 views)
  197. GlfTrio‏‎ (17,075 views)
  198. Tutorial: EMMAX GotCloud STOM‏‎ (17,066 views)
  199. VerifyIDintensity‏‎ (16,960 views)
  200. GotCloud: Amazon Demo‏‎ (16,884 views)
  201. Summary Statistics Files Specification for RAREMETAL and rvtests‏‎ (16,759 views)
  202. Debuggers‏‎ (16,473 views)
  203. Basic Linux Intro‏‎ (16,324 views)
  204. VICES‏‎ (16,143 views)
  205. LibStatGen Troubleshooting‏‎ (16,120 views)
  206. NHLBI Informatics Resource‏‎ (15,946 views)
  207. Sean Caron‏‎ (15,763 views)
  208. MaCH: Input Files‏‎ (15,628 views)
  209. Understanding vcf-summary output‏‎ (15,401 views)
  210. C++ Class: CigarRoller‏‎ (15,278 views)
  211. LibStatGen: ASP‏‎ (15,135 views)
  212. Examples of Read Mapping with Karma and BWA‏‎ (15,035 views)
  213. M3VCF Files‏‎ (14,999 views)
  214. TabAnno‏‎ (14,887 views)
  215. MaCH: machX‏‎ (14,837 views)
  216. CalcMatch‏‎ (14,637 views)
  217. RAREFY DOWNLOAD‏‎ (14,586 views)
  218. SplitPed‏‎ (14,534 views)
  219. RelativeFinder‏‎ (14,419 views)
  220. RAREMETALWORKER SPECIAL TOPICS‏‎ (14,373 views)
  221. Dajiang Liu‏‎ (14,300 views)
  222. BamUtil: splitChromosome‏‎ (14,052 views)
  223. Computer How-Tos‏‎ (13,997 views)
  224. Mach DAC‏‎ (13,935 views)
  225. GotCloud: Source Releases‏‎ (13,934 views)
  226. 1000 Genomes Project Pilot 1 SNP Calling‏‎ (13,918 views)
  227. Understanding VerifyBamID output‏‎ (13,845 views)
  228. BamUtil: squeeze‏‎ (13,812 views)
  229. LibStatGen: general‏‎ (13,775 views)
  230. Haploxt‏‎ (13,626 views)
  231. Tutorial: Low Pass Sequence Analysis Answers‏‎ (13,453 views)
  232. RAREFY TUTORIAL‏‎ (13,385 views)
  233. ContaminationDetection‏‎ (13,283 views)
  234. Stouffer Method for Meta-Analysis‏‎ (13,280 views)
  235. GotCloud: Variant Calling Options‏‎ (13,232 views)
  236. C++ Class: SamFileHeader‏‎ (13,069 views)
  237. Samtools-hybrid‏‎ (13,044 views)
  238. Phred scale‏‎ (13,028 views)
  239. LiftMap.py‏‎ (12,968 views)
  240. CheckVCF.py‏‎ (12,923 views)
  241. Pileup‏‎ (12,751 views)
  242. Biostatistics 666: Linkage Disequilibrium‏‎ (12,751 views)
  243. BamUtil: revert‏‎ (12,565 views)
  244. Genotype Likelihood based Allele Frequency‏‎ (12,488 views)
  245. MutationFilter‏‎ (12,384 views)
  246. Test EPACTS for DIAGRAM‏‎ (12,372 views)
  247. Minimac3 - Full List of Options‏‎ (12,365 views)
  248. FastQ Validation Criteria‏‎ (12,287 views)
  249. Raremetal Incoming updates‏‎ (12,283 views)
  250. Analyses of Indels‏‎ (12,037 views)

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