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  1. Biostatistics 666: Rare Variant Burden Tests‏‎ (07:48, 30 November 2011)
  2. Biostatistics 666: Analysis of Copy Number Using Sequence Data‏‎ (09:14, 5 December 2011)
  3. Biostatistics 666: Likelihood Calculations for Large Pedigrees‏‎ (04:48, 7 December 2011)
  4. Installing MinGW & MSYS on Windows‏‎ (12:30, 18 January 2012)
  5. Vpeep‏‎ (11:48, 19 January 2012)
  6. ThunderVCF‏‎ (07:42, 23 January 2012)
  7. Vmatch‏‎ (17:11, 23 January 2012)
  8. Arf‏‎ (18:38, 2 February 2012)
  9. FTEC‏‎ (11:21, 17 February 2012)
  10. BamUtil: indelDiscordance‏‎ (16:10, 23 February 2012)
  11. Pileup‏‎ (15:06, 3 April 2012)
  12. VCF‏‎ (18:10, 18 April 2012)
  13. LibStatGen: ASP‏‎ (11:45, 30 April 2012)
  14. GlfTrio‏‎ (12:45, 1 May 2012)
  15. C++ Library: FASTQ Change Log‏‎ (12:56, 1 May 2012)
  16. C++ Library: general Change Log‏‎ (12:57, 1 May 2012)
  17. StatsTools‏‎ (17:17, 1 June 2012)
  18. LiftMap.py‏‎ (23:18, 18 June 2012)
  19. Bam read count‏‎ (15:29, 14 August 2012)
  20. Biostatistics 615/815 Fall 2011‏‎ (17:35, 31 August 2012)
  21. SNP Call Set Properties‏‎ (19:08, 10 September 2012)
  22. IMPUTE2: 1000 Genomes Imputation Cookbook‏‎ (05:19, 11 September 2012)
  23. Biostatistics 815 Term Project‏‎ (23:35, 19 September 2012)
  24. IGFPipe‏‎ (15:12, 2 November 2012)
  25. AWS Resources‏‎ (13:44, 15 November 2012)
  26. Biostatistics 666: Core Competencies‏‎ (06:56, 5 December 2012)
  27. Biostatistics 615/815: Main Page‏‎ (21:53, 18 December 2012)
  28. LibStatGen: VCF‏‎ (16:09, 23 January 2013)
  29. Mach2dat: Association with MACH output‏‎ (22:12, 5 February 2013)
  30. Vcf2geno‏‎ (17:01, 19 February 2013)
  31. GBR60vc.conf‏‎ (02:05, 25 February 2013)
  32. BAM‏‎ (23:16, 26 February 2013)
  33. BamPileup‏‎ (18:08, 28 February 2013)
  34. Understanding VerifyBamID output‏‎ (16:48, 4 March 2013)
  35. RareMetals‏‎ (22:06, 6 March 2013)
  36. HAPMIX‏‎ (14:05, 13 March 2013)
  37. Polymutt beta‏‎ (12:42, 17 March 2013)
  38. GotCloud: RedHat Package‏‎ (16:31, 18 March 2013)
  39. Rare-metal-worker‏‎ (21:31, 31 March 2013)
  40. MutationFilter‏‎ (01:06, 16 April 2013)
  41. How to use aspera‏‎ (00:56, 9 May 2013)
  42. Amazon Snapshot‏‎ (13:06, 20 May 2013)
  43. Creating a Snapshot on EC2‏‎ (13:12, 20 May 2013)
  44. Trial Enrichment‏‎ (18:28, 21 May 2013)
  45. Goncalo Abecasis: Interview with Christiana Fogg‏‎ (14:56, 7 June 2013)
  46. BAM to FASTQ‏‎ (10:45, 10 June 2013)
  47. Mary Kate Wing‏‎ (14:52, 17 June 2013)
  48. Jennifer Bragg-Gresham‏‎ (10:18, 18 June 2013)
  49. Lars Fritsche‏‎ (13:16, 27 June 2013)
  50. Sara Rashkin‏‎ (13:18, 27 June 2013)
  51. Ben Lerch‏‎ (13:21, 27 June 2013)
  52. Tom Blackwell‏‎ (17:06, 28 June 2013)
  53. SardiNIA project meeting July 15-16, 2013‏‎ (11:46, 8 July 2013)
  54. Goncalo Abecasis‏‎ (01:51, 3 August 2013)
  55. Exome Chip Design‏‎ (07:42, 6 August 2013)
  56. Tutorial: GotCloud UW CMG‏‎ (16:15, 6 August 2013)
  57. GLF‏‎ (11:22, 13 August 2013)
  58. Biostatistics 830: Core Competencies‏‎ (09:27, 4 September 2013)
  59. FamRvTest tutorial‏‎ (14:33, 10 September 2013)
  60. Ligate Minimac‏‎ (15:06, 10 September 2013)
  61. PileupBasedVariantCalling‏‎ (15:52, 10 September 2013)
  62. 830 - Haplotyper::Transpose()‏‎ (14:52, 13 September 2013)
  63. 830 - Haplotyper::SetupPrior()‏‎ (14:56, 13 September 2013)
  64. 830 - Haplotyper::ConditionOnData()‏‎ (14:58, 13 September 2013)
  65. 830 - Haplotyper::RandomSetup()‏‎ (15:56, 13 September 2013)
  66. 830 - MarkovModel::Transpose()‏‎ (14:39, 25 September 2013)
  67. 830 - MarkovModel::Condition()‏‎ (14:40, 25 September 2013)
  68. 830 - MarkovModel::WalkRight()‏‎ (14:45, 25 September 2013)
  69. 830 - MarkovModel::Impute()‏‎ (14:50, 25 September 2013)
  70. 830 - MarkovModel::CountRecombinants()‏‎ (14:54, 25 September 2013)
  71. 830 - MarkovModel::CountErrors()‏‎ (14:57, 25 September 2013)
  72. 830 - MarkovModel::CountErrorsAndRecombinants()‏‎ (15:01, 25 September 2013)
  73. GlfSingle‏‎ (11:34, 26 September 2013)
  74. 830 - Haplotyper::ScoreLeftConditional()‏‎ (13:30, 2 October 2013)
  75. 830 - Haplotyper::SampleHaplotypes()‏‎ (14:10, 2 October 2013)
  76. 830 - Haplotyper::SampleChromosomes()‏‎ (14:11, 2 October 2013)
  77. 830 - Haplotyper::ImputeGenotypes()‏‎ (14:19, 2 October 2013)
  78. 830 - Haplotyper::ScoreLeftConditional() (smart, complicated)‏‎ (14:31, 2 October 2013)
  79. 830 - MINIMAC::main()‏‎ (15:06, 2 October 2013)
  80. 830 - Haplotyper::SummarizeOptions()‏‎ (15:55, 2 October 2013)
  81. 830 - Haplotyper::SampleOneHaplotype()‏‎ (16:03, 2 October 2013)
  82. 830 - Haplotyper::ImputeGenotypes() (internal)‏‎ (16:15, 2 October 2013)
  83. 830 - Haplotyper::ImputeGenotypes() (edge)‏‎ (16:16, 2 October 2013)
  84. Rare Variant Analysis and Meta-Analysis‏‎ (11:13, 3 October 2013)
  85. Scott Vrieze‏‎ (09:16, 4 October 2013)
  86. Mount S3 Volume‏‎ (14:05, 10 October 2013)
  87. 830 - BasicMapper::main()‏‎ (13:29, 28 October 2013)
  88. 830 - MaqIndex::CompareToIndex()‏‎ (13:34, 28 October 2013)
  89. 830 - MaqIndex::BuildIndex()‏‎ (13:38, 28 October 2013)
  90. 830 - MaqIndex::GetWord()‏‎ (13:39, 28 October 2013)
  91. 830 - BestAlignment::MaqAlignment()‏‎ (13:45, 28 October 2013)
  92. 830 - BestAlignment::EvaluateAlignment() (main loop)‏‎ (13:46, 28 October 2013)
  93. 830 - BestAlignment::EvaluateAlignment() (detailed comparison)‏‎ (13:47, 28 October 2013)
  94. 830 - BestAlignment::isNewPosition()‏‎ (13:51, 28 October 2013)
  95. 830 - BestAlignment::ClearPositions()‏‎ (13:53, 28 October 2013)
  96. Biostatistics 830 - Code Snippets‏‎ (13:53, 28 October 2013)
  97. 830 - BestAlignment::IterateCache()‏‎ (13:58, 28 October 2013)
  98. 830 - MaqIndex::LookupWord()‏‎ (16:09, 28 October 2013)
  99. SEQMIX‏‎ (03:07, 4 November 2013)
  100. Code Sample: Generating QQ Plots in R‏‎ (14:14, 12 November 2013)
  101. EMADS‏‎ (23:03, 14 November 2013)
  102. EMADS Primary Analysis Plan‏‎ (23:03, 14 November 2013)
  103. Biostatistics 602: Main Page‏‎ (10:29, 26 November 2013)
  104. BamUtil: asp‏‎ (17:38, 3 January 2014)
  105. BamUtil: dumpAsp‏‎ (17:39, 3 January 2014)
  106. BamUtil: splitChromosome‏‎ (17:43, 3 January 2014)
  107. BamUtil: findCigars‏‎ (18:27, 3 January 2014)
  108. BamUtil: convert‏‎ (18:27, 3 January 2014)
  109. BamUtil: splitBam‏‎ (18:28, 3 January 2014)
  110. Tutorial: EMMAX GotCloud STOM: Lecture 2‏‎ (03:07, 6 January 2014)
  111. Tutorial: EMMAX GotCloud STOM: Lecture 6‏‎ (09:58, 6 January 2014)
  112. Tutorial: EMMAX GotCloud STOM: Lecture 5‏‎ (10:07, 6 January 2014)
  113. Tutorial: EMMAX GotCloud STOM‏‎ (10:56, 6 January 2014)
  114. BamUtil: writeRegion‏‎ (12:30, 6 January 2014)
  115. BamUtil: validate‏‎ (14:05, 6 January 2014)
  116. BamUtil: polishBam‏‎ (14:06, 6 January 2014)
  117. BamUtil: mergeBam‏‎ (14:06, 6 January 2014)
  118. BamUtil: revert‏‎ (14:07, 6 January 2014)
  119. BamUtil: filter‏‎ (14:07, 6 January 2014)
  120. PhoneHome‏‎ (16:24, 6 January 2014)
  121. BamUtil: dumpHeader‏‎ (16:50, 6 January 2014)
  122. BamUtil: diff‏‎ (17:00, 6 January 2014)
  123. BamUtil: readIndexedBam‏‎ (17:48, 6 January 2014)
  124. BamUtil: dumpRefInfo‏‎ (17:54, 6 January 2014)
  125. BamUtil: dumpIndex‏‎ (18:01, 6 January 2014)
  126. BamUtil: readReference‏‎ (18:07, 6 January 2014)
  127. BamUtil: explainFlags‏‎ (19:01, 6 January 2014)
  128. Tutorial: EMMAX GotCloud STOM: Lecture 8‏‎ (02:31, 7 January 2014)
  129. Tutorial: GotCloud‏‎ (12:35, 10 January 2014)
  130. Code Sample: Generating Manhattan Plots in R‏‎ (10:49, 14 January 2014)
  131. UMAKE-glfSingle‏‎ (12:32, 22 January 2014)
  132. Ann Arbor Travel Basics‏‎ (15:16, 25 March 2014)
  133. BamUtil: squeeze‏‎ (11:58, 26 March 2014)
  134. RAREMETALWORKER X‏‎ (19:13, 27 March 2014)
  135. VerifyIDintensity‏‎ (15:34, 24 April 2014)
  136. Polymutt‏‎ (10:12, 27 April 2014)
  137. GotCloud: Source Releases‏‎ (17:34, 15 May 2014)
  138. Analyses of Indels‏‎ (18:12, 15 June 2014)
  139. Sequencing Workshop Analysis of Indels‏‎ (16:47, 16 June 2014)
  140. Introduction to new students‏‎ (21:39, 17 June 2014)
  141. FamRvTest command‏‎ (01:48, 14 July 2014)
  142. Abecasis Group Awards‏‎ (19:01, 23 July 2014)
  143. Sean Caron‏‎ (15:11, 31 July 2014)
  144. Ancestry‏‎ (14:53, 12 August 2014)
  145. FamLDCaller‏‎ (10:05, 18 August 2014)
  146. Biostatistics 830: Fall 2013 Edition‏‎ (13:59, 2 September 2014)
  147. VcfRefGen‏‎ (15:53, 4 September 2014)
  148. Xiaowei Zhan‏‎ (18:02, 4 September 2014)
  149. BamUtil: FAQ‏‎ (13:04, 23 September 2014)
  150. Debuggers‏‎ (14:33, 23 September 2014)
  151. Examples of Read Mapping with Karma and BWA‏‎ (16:50, 23 September 2014)
  152. GotCloud: Reference Files‏‎ (13:19, 6 October 2014)
  153. Creating an AMI on EC2‏‎ (14:54, 14 October 2014)
  154. Configure GotCloud‏‎ (09:39, 16 October 2014)
  155. Amazon Single Node‏‎ (16:51, 16 October 2014)
  156. Understanding QPLOT output‏‎ (10:03, 23 October 2014)
  157. GotCloud: Configuration‏‎ (18:53, 23 October 2014)
  158. GotCloud: Filters‏‎ (10:53, 29 October 2014)
  159. AWS Credentials‏‎ (17:31, 29 October 2014)
  160. GotCloud: AMIs‏‎ (15:56, 30 October 2014)
  161. GotCloud: Amazon Demo‏‎ (12:55, 31 October 2014)
  162. Amazon Storage‏‎ (16:49, 5 November 2014)
  163. StarCluster‏‎ (10:49, 7 November 2014)
  164. SeqShop: June 2014‏‎ (14:21, 13 November 2014)
  165. SeqShop: Aligning Your Own Genome, June 2014‏‎ (14:25, 13 November 2014)
  166. SeqShop: Calling Your Own Genome, June 2014‏‎ (14:30, 13 November 2014)
  167. SeqShop: Friday - Practicing what we learned, June 2014‏‎ (14:31, 13 November 2014)
  168. SeqShop: Ancestry On Your Own Genome, June 2014‏‎ (14:32, 13 November 2014)
  169. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014‏‎ (14:36, 13 November 2014)
  170. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014‏‎ (14:37, 13 November 2014)
  171. SeqShop: Analysis of Structural Variation Practical, June 2014‏‎ (14:37, 13 November 2014)
  172. Understanding vcf-summary output‏‎ (22:31, 23 November 2014)
  173. SeqShop: Aligning Your Own Genome, December 2014‏‎ (10:23, 8 December 2014)
  174. SeqShop: Ancestry On Your Own Genome, December 2014‏‎ (12:43, 12 December 2014)
  175. SeqShop: Calling Your Own Genome, December 2014‏‎ (12:16, 15 December 2014)
  176. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014‏‎ (17:09, 17 December 2014)
  177. SeqShop: Analysis of Structural Variation Practical, December 2014‏‎ (17:09, 17 December 2014)
  178. SeqShop: December 2014‏‎ (12:17, 18 December 2014)
  179. RvTests‏‎ (22:59, 13 January 2015)
  180. Minimac: 1000 Genomes Imputation Cookbook‏‎ (03:40, 28 January 2015)
  181. Minimac Command Reference‏‎ (03:40, 28 January 2015)
  182. M3VCF Files‏‎ (20:35, 29 January 2015)
  183. Minimac3 Imputation Cookbook‏‎ (23:28, 29 January 2015)
  184. Minimac3 Cookbook : Pre-Phasing‏‎ (02:20, 30 January 2015)
  185. Minimac3 Cookbook : Converting Files to VCF‏‎ (23:32, 30 January 2015)
  186. NHLBI Informatics Resource‏‎ (01:04, 31 January 2015)
  187. Class Notes‏‎ (16:44, 4 February 2015)
  188. Screen Commands‏‎ (12:44, 6 February 2015)
  189. GotCloud: GenomeSTRiP Pipeline‏‎ (18:47, 10 February 2015)
  190. GotCloud: Variant Calling Options‏‎ (14:57, 11 February 2015)
  191. RAREFY‏‎ (20:17, 16 February 2015)
  192. Shuang Feng‏‎ (20:29, 16 February 2015)
  193. RAREFY FAQ‏‎ (03:44, 17 February 2015)
  194. RAREFY DOWNLOAD‏‎ (05:08, 17 February 2015)
  195. RAREFY DOCUMENTATION‏‎ (05:08, 17 February 2015)
  196. RAREFY COMMAND‏‎ (05:09, 17 February 2015)
  197. RAREFY TUTORIAL‏‎ (05:10, 17 February 2015)
  198. Dosage convertor‏‎ (01:13, 28 February 2015)
  199. MEAGA‏‎ (21:37, 4 March 2015)
  200. Short Workshops‏‎ (17:05, 9 March 2015)
  201. GotCloud: Alignment Sub-Pipelines‏‎ (21:37, 18 March 2015)
  202. GTDT‏‎ (08:18, 26 March 2015)
  203. GotCloud: Variant Calling Pipeline‏‎ (18:54, 30 March 2015)
  204. SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014‏‎ (19:12, 30 March 2015)
  205. GotCloud: Genetic Reference and Resource Files‏‎ (12:00, 14 May 2015)
  206. GotCloud: Versions‏‎ (12:17, 14 May 2015)
  207. SeqShop: Sequence Mapping and Assembly Practical, December 2014‏‎ (16:35, 15 May 2015)
  208. SeqShop: Aligning Your Own Genome, May 2015‏‎ (11:34, 18 May 2015)
  209. TrioCaller‏‎ (18:01, 19 May 2015)
  210. SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015‏‎ (11:22, 20 May 2015)
  211. SeqShop: Association Analysis, May 2015‏‎ (14:15, 21 May 2015)
  212. SeqShop: Ancestry On Your Own Genome, May 2015‏‎ (14:57, 21 May 2015)
  213. SeqShop: May 2015‏‎ (10:40, 22 May 2015)
  214. SeqShop: Calling Your Own Genome, May 2015‏‎ (12:10, 22 May 2015)
  215. GotCloud: FAQs‏‎ (10:54, 23 June 2015)
  216. RareMETALS2‏‎ (15:11, 29 June 2015)
  217. Biostatistics 501: Main Page‏‎ (16:10, 10 July 2015)
  218. LiftOver‏‎ (18:33, 15 July 2015)
  219. Genotype Likelihood based Hardy-Weinberg Test‏‎ (15:52, 3 August 2015)
  220. Genotype Likelihood based Inbreeding Coefficient‏‎ (15:53, 3 August 2015)
  221. Genotype Likelihood based Allele Frequency‏‎ (15:54, 3 August 2015)
  222. Dajiang Liu‏‎ (14:30, 13 August 2015)
  223. SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015‏‎ (18:35, 19 August 2015)
  224. SeqShop: Analysis of Structural Variation Practical, May 2015‏‎ (15:56, 25 August 2015)
  225. GotCloud: Amazon‏‎ (13:55, 31 August 2015)
  226. GotCloud: Creating a New Pipeline‏‎ (14:55, 31 August 2015)
  227. Git FAQs‏‎ (18:50, 8 September 2015)
  228. Minimac3 Cookbook : Chromosome X Imputation‏‎ (13:19, 10 September 2015)
  229. Minimac3 Examples‏‎ (02:15, 11 September 2015)
  230. SAM‏‎ (16:10, 11 September 2015)
  231. M3vcftools Usage‏‎ (22:04, 18 October 2015)
  232. Minimac3 Info (Older Version)‏‎ (17:51, 19 October 2015)
  233. VcfCooker‏‎ (01:51, 31 October 2015)
  234. Releasing GotCloud‏‎ (22:17, 6 November 2015)
  235. GotCloud: Binary Releases‏‎ (23:29, 7 January 2016)
  236. Using Gotcloud on Flux‏‎ (11:51, 12 January 2016)
  237. Alan Kwong‏‎ (23:45, 22 January 2016)
  238. SeqShop: Sequence Mapping and Assembly Practical, May 2015‏‎ (03:00, 28 January 2016)
  239. Imputation Server: Example‏‎ (11:14, 28 January 2016)
  240. GotCloud: Alignment Pipeline‏‎ (18:39, 28 January 2016)
  241. Tandem Repeat Concepts‏‎ (19:17, 25 February 2016)
  242. Variant classification‏‎ (21:44, 25 February 2016)
  243. BamUtil: bam2FastQ‏‎ (23:53, 5 March 2016)
  244. BamUtil: clipOverlap‏‎ (00:01, 6 March 2016)
  245. BamUtil: gapInfo‏‎ (01:45, 6 March 2016)
  246. Genezoom‏‎ (11:40, 16 March 2016)
  247. Rvtests‏‎ (00:31, 12 May 2016)
  248. Minimac3 Usage‏‎ (19:32, 6 June 2016)
  249. Minimac3 - Full List of Options‏‎ (19:34, 6 June 2016)
  250. Minimac3 ChangeLog‏‎ (22:24, 6 June 2016)

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