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  1. C++ Class Averages‏‎ (12:27, 2 August 2010)
  2. CigarRoller Proposed Update‏‎ (11:11, 4 August 2010)
  3. BaseQualityCheck‏‎ (04:35, 27 August 2010)
  4. SAM Validation Criteria‏‎ (15:51, 27 August 2010)
  5. Biostatistics 666: Introductory Lecture‏‎ (10:14, 7 September 2010)
  6. Gzip File‏‎ (23:16, 8 September 2010)
  7. Evaluating a Read Mapper on Simulated Data‏‎ (23:19, 8 September 2010)
  8. NHLBI Exome Sequencing Project‏‎ (21:44, 14 September 2010)
  9. SAM: Filtering Reads‏‎ (17:25, 21 September 2010)
  10. New Fugue‏‎ (13:35, 27 September 2010)
  11. Tramp‏‎ (23:47, 29 September 2010)
  12. Fst‏‎ (03:47, 3 October 2010)
  13. Biostatistics 666: Haplotype Association Tests‏‎ (00:34, 12 October 2010)
  14. Haploxt‏‎ (18:22, 21 October 2010)
  15. Genotype Likelihood Based Allele Balance‏‎ (15:22, 22 October 2010)
  16. Biostatistics 666: Association Tests in Structured Populations‏‎ (04:30, 26 October 2010)
  17. VcfGenomeStat‏‎ (00:35, 2 November 2010)
  18. Read Mapping‏‎ (22:53, 17 November 2010)
  19. Gzip‏‎ (22:53, 17 November 2010)
  20. RelativeFinder‏‎ (04:17, 23 November 2010)
  21. MaCH‏‎ (08:34, 26 November 2010)
  22. Biostatistics 666: Analysis of Low Pass Sequence Data‏‎ (23:32, 1 December 2010)
  23. Biostatistics 666: Copy Number Variation‏‎ (21:05, 2 December 2010)
  24. Variant Call Pipeline‏‎ (15:36, 21 December 2010)
  25. Meta Analysis of SNPxEnvironment Interaction‏‎ (12:24, 10 January 2011)
  26. Example‏‎ (15:39, 30 January 2011)
  27. Editing Sequence Analysis Practice 2011/03/10‏‎ (02:14, 10 March 2011)
  28. Sequence Analysis Practice 2011/03/09‏‎ (13:29, 10 March 2011)
  29. METAL GENOMICCONTROL‏‎ (07:34, 25 March 2011)
  30. METAL Command Reference‏‎ (07:36, 25 March 2011)
  31. METAL‏‎ (10:33, 25 March 2011)
  32. Makefile.tool‏‎ (17:20, 28 March 2011)
  33. Garlic‏‎ (15:46, 5 April 2011)
  34. Git Cheat Sheet‏‎ (19:13, 7 July 2011)
  35. Using Git Example‏‎ (17:51, 12 July 2011)
  36. Bar Harbor Statistical Genetics Workshop‏‎ (14:54, 21 July 2011)
  37. Basic Linux Intro‏‎ (15:46, 26 July 2011)
  38. Computer How-Tos‏‎ (10:51, 27 July 2011)
  39. MaCH: 1000 Genomes Imputation Cookbook‏‎ (03:08, 28 July 2011)
  40. Hardy Weinberg equilibrium‏‎ (07:12, 5 August 2011)
  41. LiftRsNumber.py‏‎ (11:33, 10 August 2011)
  42. IMPUTE2‏‎ (16:17, 10 August 2011)
  43. LibStatGen Repository‏‎ (15:24, 23 August 2011)
  44. Biostatistics 615/815 Winter 2011‏‎ (00:10, 6 September 2011)
  45. Sam Library Usage Examples‏‎ (09:07, 7 September 2011)
  46. FastQ Validation Criteria‏‎ (14:01, 7 September 2011)
  47. StatgenTools‏‎ (13:06, 9 September 2011)
  48. How To Use Git‏‎ (16:58, 9 September 2011)
  49. Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium‏‎ (07:33, 12 September 2011)
  50. Better X Sessions from Home (NX)‏‎ (12:51, 8 November 2011)
  51. Biostatistics 666: Rare Variant Burden Tests‏‎ (07:48, 30 November 2011)
  52. Biostatistics 666: Analysis of Copy Number Using Sequence Data‏‎ (09:14, 5 December 2011)
  53. Biostatistics 666: Likelihood Calculations for Large Pedigrees‏‎ (04:48, 7 December 2011)
  54. Installing MinGW & MSYS on Windows‏‎ (12:30, 18 January 2012)
  55. Vpeep‏‎ (11:48, 19 January 2012)
  56. ThunderVCF‏‎ (07:42, 23 January 2012)
  57. Vmatch‏‎ (17:11, 23 January 2012)
  58. Arf‏‎ (18:38, 2 February 2012)
  59. FTEC‏‎ (11:21, 17 February 2012)
  60. BamUtil: indelDiscordance‏‎ (16:10, 23 February 2012)
  61. Pileup‏‎ (15:06, 3 April 2012)
  62. VCF‏‎ (18:10, 18 April 2012)
  63. LibStatGen: ASP‏‎ (11:45, 30 April 2012)
  64. GlfTrio‏‎ (12:45, 1 May 2012)
  65. C++ Library: FASTQ Change Log‏‎ (12:56, 1 May 2012)
  66. C++ Library: general Change Log‏‎ (12:57, 1 May 2012)
  67. StatsTools‏‎ (17:17, 1 June 2012)
  68. LiftMap.py‏‎ (23:18, 18 June 2012)
  69. Bam read count‏‎ (15:29, 14 August 2012)
  70. Biostatistics 615/815 Fall 2011‏‎ (17:35, 31 August 2012)
  71. SNP Call Set Properties‏‎ (19:08, 10 September 2012)
  72. IMPUTE2: 1000 Genomes Imputation Cookbook‏‎ (05:19, 11 September 2012)
  73. Biostatistics 815 Term Project‏‎ (23:35, 19 September 2012)
  74. IGFPipe‏‎ (15:12, 2 November 2012)
  75. AWS Resources‏‎ (13:44, 15 November 2012)
  76. Biostatistics 666: Core Competencies‏‎ (06:56, 5 December 2012)
  77. Biostatistics 615/815: Main Page‏‎ (21:53, 18 December 2012)
  78. LibStatGen: VCF‏‎ (16:09, 23 January 2013)
  79. Mach2dat: Association with MACH output‏‎ (22:12, 5 February 2013)
  80. Vcf2geno‏‎ (17:01, 19 February 2013)
  81. GBR60vc.conf‏‎ (02:05, 25 February 2013)
  82. BAM‏‎ (23:16, 26 February 2013)
  83. BamPileup‏‎ (18:08, 28 February 2013)
  84. Understanding VerifyBamID output‏‎ (16:48, 4 March 2013)
  85. RareMetals‏‎ (22:06, 6 March 2013)
  86. HAPMIX‏‎ (14:05, 13 March 2013)
  87. Polymutt beta‏‎ (12:42, 17 March 2013)
  88. GotCloud: RedHat Package‏‎ (16:31, 18 March 2013)
  89. Rare-metal-worker‏‎ (21:31, 31 March 2013)
  90. MutationFilter‏‎ (01:06, 16 April 2013)
  91. How to use aspera‏‎ (00:56, 9 May 2013)
  92. Amazon Snapshot‏‎ (13:06, 20 May 2013)
  93. Creating a Snapshot on EC2‏‎ (13:12, 20 May 2013)
  94. Trial Enrichment‏‎ (18:28, 21 May 2013)
  95. Goncalo Abecasis: Interview with Christiana Fogg‏‎ (14:56, 7 June 2013)
  96. BAM to FASTQ‏‎ (10:45, 10 June 2013)
  97. Mary Kate Wing‏‎ (14:52, 17 June 2013)
  98. Jennifer Bragg-Gresham‏‎ (10:18, 18 June 2013)
  99. Lars Fritsche‏‎ (13:16, 27 June 2013)
  100. Sara Rashkin‏‎ (13:18, 27 June 2013)
  101. Ben Lerch‏‎ (13:21, 27 June 2013)
  102. Tom Blackwell‏‎ (17:06, 28 June 2013)
  103. SardiNIA project meeting July 15-16, 2013‏‎ (11:46, 8 July 2013)
  104. Goncalo Abecasis‏‎ (01:51, 3 August 2013)
  105. Exome Chip Design‏‎ (07:42, 6 August 2013)
  106. Tutorial: GotCloud UW CMG‏‎ (16:15, 6 August 2013)
  107. GLF‏‎ (11:22, 13 August 2013)
  108. Biostatistics 830: Core Competencies‏‎ (09:27, 4 September 2013)
  109. FamRvTest tutorial‏‎ (14:33, 10 September 2013)
  110. Ligate Minimac‏‎ (15:06, 10 September 2013)
  111. PileupBasedVariantCalling‏‎ (15:52, 10 September 2013)
  112. 830 - Haplotyper::Transpose()‏‎ (14:52, 13 September 2013)
  113. 830 - Haplotyper::SetupPrior()‏‎ (14:56, 13 September 2013)
  114. 830 - Haplotyper::ConditionOnData()‏‎ (14:58, 13 September 2013)
  115. 830 - Haplotyper::RandomSetup()‏‎ (15:56, 13 September 2013)
  116. 830 - MarkovModel::Transpose()‏‎ (14:39, 25 September 2013)
  117. 830 - MarkovModel::Condition()‏‎ (14:40, 25 September 2013)
  118. 830 - MarkovModel::WalkRight()‏‎ (14:45, 25 September 2013)
  119. 830 - MarkovModel::Impute()‏‎ (14:50, 25 September 2013)
  120. 830 - MarkovModel::CountRecombinants()‏‎ (14:54, 25 September 2013)
  121. 830 - MarkovModel::CountErrors()‏‎ (14:57, 25 September 2013)
  122. 830 - MarkovModel::CountErrorsAndRecombinants()‏‎ (15:01, 25 September 2013)
  123. GlfSingle‏‎ (11:34, 26 September 2013)
  124. 830 - Haplotyper::ScoreLeftConditional()‏‎ (13:30, 2 October 2013)
  125. 830 - Haplotyper::SampleHaplotypes()‏‎ (14:10, 2 October 2013)
  126. 830 - Haplotyper::SampleChromosomes()‏‎ (14:11, 2 October 2013)
  127. 830 - Haplotyper::ImputeGenotypes()‏‎ (14:19, 2 October 2013)
  128. 830 - Haplotyper::ScoreLeftConditional() (smart, complicated)‏‎ (14:31, 2 October 2013)
  129. 830 - MINIMAC::main()‏‎ (15:06, 2 October 2013)
  130. 830 - Haplotyper::SummarizeOptions()‏‎ (15:55, 2 October 2013)
  131. 830 - Haplotyper::SampleOneHaplotype()‏‎ (16:03, 2 October 2013)
  132. 830 - Haplotyper::ImputeGenotypes() (internal)‏‎ (16:15, 2 October 2013)
  133. 830 - Haplotyper::ImputeGenotypes() (edge)‏‎ (16:16, 2 October 2013)
  134. Rare Variant Analysis and Meta-Analysis‏‎ (11:13, 3 October 2013)
  135. Scott Vrieze‏‎ (09:16, 4 October 2013)
  136. Mount S3 Volume‏‎ (14:05, 10 October 2013)
  137. 830 - BasicMapper::main()‏‎ (13:29, 28 October 2013)
  138. 830 - MaqIndex::CompareToIndex()‏‎ (13:34, 28 October 2013)
  139. 830 - MaqIndex::BuildIndex()‏‎ (13:38, 28 October 2013)
  140. 830 - MaqIndex::GetWord()‏‎ (13:39, 28 October 2013)
  141. 830 - BestAlignment::MaqAlignment()‏‎ (13:45, 28 October 2013)
  142. 830 - BestAlignment::EvaluateAlignment() (main loop)‏‎ (13:46, 28 October 2013)
  143. 830 - BestAlignment::EvaluateAlignment() (detailed comparison)‏‎ (13:47, 28 October 2013)
  144. 830 - BestAlignment::isNewPosition()‏‎ (13:51, 28 October 2013)
  145. 830 - BestAlignment::ClearPositions()‏‎ (13:53, 28 October 2013)
  146. Biostatistics 830 - Code Snippets‏‎ (13:53, 28 October 2013)
  147. 830 - BestAlignment::IterateCache()‏‎ (13:58, 28 October 2013)
  148. 830 - MaqIndex::LookupWord()‏‎ (16:09, 28 October 2013)
  149. SEQMIX‏‎ (03:07, 4 November 2013)
  150. Code Sample: Generating QQ Plots in R‏‎ (14:14, 12 November 2013)
  151. EMADS‏‎ (23:03, 14 November 2013)
  152. EMADS Primary Analysis Plan‏‎ (23:03, 14 November 2013)
  153. Biostatistics 602: Main Page‏‎ (10:29, 26 November 2013)
  154. BamUtil: asp‏‎ (17:38, 3 January 2014)
  155. BamUtil: dumpAsp‏‎ (17:39, 3 January 2014)
  156. BamUtil: splitChromosome‏‎ (17:43, 3 January 2014)
  157. BamUtil: findCigars‏‎ (18:27, 3 January 2014)
  158. BamUtil: convert‏‎ (18:27, 3 January 2014)
  159. BamUtil: splitBam‏‎ (18:28, 3 January 2014)
  160. Tutorial: EMMAX GotCloud STOM: Lecture 2‏‎ (03:07, 6 January 2014)
  161. Tutorial: EMMAX GotCloud STOM: Lecture 6‏‎ (09:58, 6 January 2014)
  162. Tutorial: EMMAX GotCloud STOM: Lecture 5‏‎ (10:07, 6 January 2014)
  163. Tutorial: EMMAX GotCloud STOM‏‎ (10:56, 6 January 2014)
  164. BamUtil: writeRegion‏‎ (12:30, 6 January 2014)
  165. BamUtil: validate‏‎ (14:05, 6 January 2014)
  166. BamUtil: polishBam‏‎ (14:06, 6 January 2014)
  167. BamUtil: mergeBam‏‎ (14:06, 6 January 2014)
  168. BamUtil: revert‏‎ (14:07, 6 January 2014)
  169. BamUtil: filter‏‎ (14:07, 6 January 2014)
  170. PhoneHome‏‎ (16:24, 6 January 2014)
  171. BamUtil: dumpHeader‏‎ (16:50, 6 January 2014)
  172. BamUtil: diff‏‎ (17:00, 6 January 2014)
  173. BamUtil: readIndexedBam‏‎ (17:48, 6 January 2014)
  174. BamUtil: dumpRefInfo‏‎ (17:54, 6 January 2014)
  175. BamUtil: dumpIndex‏‎ (18:01, 6 January 2014)
  176. BamUtil: readReference‏‎ (18:07, 6 January 2014)
  177. BamUtil: explainFlags‏‎ (19:01, 6 January 2014)
  178. Tutorial: EMMAX GotCloud STOM: Lecture 8‏‎ (02:31, 7 January 2014)
  179. Tutorial: GotCloud‏‎ (12:35, 10 January 2014)
  180. Code Sample: Generating Manhattan Plots in R‏‎ (10:49, 14 January 2014)
  181. UMAKE-glfSingle‏‎ (12:32, 22 January 2014)
  182. Ann Arbor Travel Basics‏‎ (15:16, 25 March 2014)
  183. BamUtil: squeeze‏‎ (11:58, 26 March 2014)
  184. RAREMETALWORKER X‏‎ (19:13, 27 March 2014)
  185. VerifyIDintensity‏‎ (15:34, 24 April 2014)
  186. Polymutt‏‎ (10:12, 27 April 2014)
  187. GotCloud: Source Releases‏‎ (17:34, 15 May 2014)
  188. Analyses of Indels‏‎ (18:12, 15 June 2014)
  189. Sequencing Workshop Analysis of Indels‏‎ (16:47, 16 June 2014)
  190. Introduction to new students‏‎ (21:39, 17 June 2014)
  191. FamRvTest command‏‎ (01:48, 14 July 2014)
  192. Abecasis Group Awards‏‎ (19:01, 23 July 2014)
  193. Sean Caron‏‎ (15:11, 31 July 2014)
  194. Ancestry‏‎ (14:53, 12 August 2014)
  195. FamLDCaller‏‎ (10:05, 18 August 2014)
  196. Biostatistics 830: Fall 2013 Edition‏‎ (13:59, 2 September 2014)
  197. VcfRefGen‏‎ (15:53, 4 September 2014)
  198. Xiaowei Zhan‏‎ (18:02, 4 September 2014)
  199. BamUtil: FAQ‏‎ (13:04, 23 September 2014)
  200. Debuggers‏‎ (14:33, 23 September 2014)
  201. Examples of Read Mapping with Karma and BWA‏‎ (16:50, 23 September 2014)
  202. GotCloud: Reference Files‏‎ (13:19, 6 October 2014)
  203. Creating an AMI on EC2‏‎ (14:54, 14 October 2014)
  204. Configure GotCloud‏‎ (09:39, 16 October 2014)
  205. Amazon Single Node‏‎ (16:51, 16 October 2014)
  206. Understanding QPLOT output‏‎ (10:03, 23 October 2014)
  207. GotCloud: Configuration‏‎ (18:53, 23 October 2014)
  208. GotCloud: Filters‏‎ (10:53, 29 October 2014)
  209. AWS Credentials‏‎ (17:31, 29 October 2014)
  210. GotCloud: AMIs‏‎ (15:56, 30 October 2014)
  211. GotCloud: Amazon Demo‏‎ (12:55, 31 October 2014)
  212. Amazon Storage‏‎ (16:49, 5 November 2014)
  213. StarCluster‏‎ (10:49, 7 November 2014)
  214. SeqShop: June 2014‏‎ (14:21, 13 November 2014)
  215. SeqShop: Aligning Your Own Genome, June 2014‏‎ (14:25, 13 November 2014)
  216. SeqShop: Calling Your Own Genome, June 2014‏‎ (14:30, 13 November 2014)
  217. SeqShop: Friday - Practicing what we learned, June 2014‏‎ (14:31, 13 November 2014)
  218. SeqShop: Ancestry On Your Own Genome, June 2014‏‎ (14:32, 13 November 2014)
  219. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014‏‎ (14:36, 13 November 2014)
  220. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014‏‎ (14:37, 13 November 2014)
  221. SeqShop: Analysis of Structural Variation Practical, June 2014‏‎ (14:37, 13 November 2014)
  222. Understanding vcf-summary output‏‎ (22:31, 23 November 2014)
  223. SeqShop: Aligning Your Own Genome, December 2014‏‎ (10:23, 8 December 2014)
  224. SeqShop: Ancestry On Your Own Genome, December 2014‏‎ (12:43, 12 December 2014)
  225. SeqShop: Calling Your Own Genome, December 2014‏‎ (12:16, 15 December 2014)
  226. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014‏‎ (17:09, 17 December 2014)
  227. SeqShop: Analysis of Structural Variation Practical, December 2014‏‎ (17:09, 17 December 2014)
  228. SeqShop: December 2014‏‎ (12:17, 18 December 2014)
  229. RvTests‏‎ (22:59, 13 January 2015)
  230. Minimac: 1000 Genomes Imputation Cookbook‏‎ (03:40, 28 January 2015)
  231. Minimac Command Reference‏‎ (03:40, 28 January 2015)
  232. M3VCF Files‏‎ (20:35, 29 January 2015)
  233. Minimac3 Imputation Cookbook‏‎ (23:28, 29 January 2015)
  234. Minimac3 Cookbook : Pre-Phasing‏‎ (02:20, 30 January 2015)
  235. Minimac3 Cookbook : Converting Files to VCF‏‎ (23:32, 30 January 2015)
  236. NHLBI Informatics Resource‏‎ (01:04, 31 January 2015)
  237. Class Notes‏‎ (16:44, 4 February 2015)
  238. Screen Commands‏‎ (12:44, 6 February 2015)
  239. GotCloud: GenomeSTRiP Pipeline‏‎ (18:47, 10 February 2015)
  240. GotCloud: Variant Calling Options‏‎ (14:57, 11 February 2015)
  241. RAREFY‏‎ (20:17, 16 February 2015)
  242. Shuang Feng‏‎ (20:29, 16 February 2015)
  243. RAREFY FAQ‏‎ (03:44, 17 February 2015)
  244. RAREFY DOWNLOAD‏‎ (05:08, 17 February 2015)
  245. RAREFY DOCUMENTATION‏‎ (05:08, 17 February 2015)
  246. RAREFY COMMAND‏‎ (05:09, 17 February 2015)
  247. RAREFY TUTORIAL‏‎ (05:10, 17 February 2015)
  248. Dosage convertor‏‎ (01:13, 28 February 2015)
  249. MEAGA‏‎ (21:37, 4 March 2015)
  250. Short Workshops‏‎ (17:05, 9 March 2015)

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