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Jump to navigationJump to search- 16:00, 17 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:59, 17 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:48, 17 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 15:33, 17 December 2014 diff hist 0 File:SplitOut.png Mktrost uploaded a new version of "File:SplitOut.png" current
- 15:22, 17 December 2014 diff hist 0 File:SnpcallDiagramNew.png Mktrost uploaded a new version of "File:SnpcallDiagramNew.png" current
- 15:18, 17 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 15:17, 17 December 2014 diff hist +13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Logging Off
- 15:05, 17 December 2014 diff hist 0 File:GcConfNew.png Mktrost uploaded a new version of "File:GcConfNew.png" current
- 14:56, 17 December 2014 diff hist -113 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 14:55, 17 December 2014 diff hist +1 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 12:07, 17 December 2014 diff hist -33 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Download & Build GotCloud
- 11:09, 17 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud snpcall.pdf" current
- 20:40, 16 December 2014 diff hist +1,704 GotCloud: Versions
- 11:48, 16 December 2014 diff hist 0 File:RefDir.png Mktrost uploaded a new version of "File:RefDir.png" current
- 11:47, 16 December 2014 diff hist 0 File:RefDir.png Mktrost uploaded a new version of "File:RefDir.png"
- 10:56, 16 December 2014 diff hist +35 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 10:53, 16 December 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 12:16, 15 December 2014 diff hist -191 SeqShop: Calling Your Own Genome, December 2014 →Wednesday FEEDBACK! current
- 12:16, 15 December 2014 diff hist -175 SeqShop: Calling Your Own Genome, December 2014 →Tuesday FEEDBACK!
- 12:15, 15 December 2014 diff hist -170 SeqShop: Calling Your Own Genome, December 2014 →WORKSHOP FEEDBACK!
- 16:36, 12 December 2014 diff hist +48 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:34, 12 December 2014 diff hist +181 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:31, 12 December 2014 diff hist +18 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:25, 12 December 2014 diff hist +125 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:22, 12 December 2014 diff hist +277 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 16:09, 12 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014 →Exonic Variants NOT found by 1000G
- 15:58, 12 December 2014 diff hist +246 SeqShop: Calling Your Own Genome, December 2014 →Annotation / Lookup against dbSNP
- 15:22, 12 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014 →Annotation / Lookup against dbSNP
- 12:43, 12 December 2014 diff hist -75 SeqShop: Ancestry On Your Own Genome, December 2014 →Visualizing Ancestry current
- 12:26, 12 December 2014 diff hist -100 SeqShop: Ancestry On Your Own Genome, December 2014 →Looking at Calling results
- 22:28, 11 December 2014 diff hist -97 SeqShop: December 2014
- 22:25, 11 December 2014 diff hist -36 SeqShop: Ancestry On Your Own Genome, December 2014 →Return to Calling your own Genome
- 22:24, 11 December 2014 diff hist -34 SeqShop: Calling Your Own Genome, December 2014 →Return to SeqShop: Ancestry On Your Own Genome, December 2014
- 22:24, 11 December 2014 diff hist -625 SeqShop: Calling Your Own Genome, December 2014 →Friday
- 22:21, 11 December 2014 diff hist +164 SeqShop: Genetic Association Analysis Practical, December 2014
- 22:21, 11 December 2014 diff hist +314 SeqShop: Ancestry On Your Own Genome, December 2014 →Run
- 22:18, 11 December 2014 diff hist -1 SeqShop: Calling Your Own Genome, December 2014 →WORKSHOP FEEDBACK!
- 22:13, 11 December 2014 diff hist +22 SeqShop: Ancestry On Your Own Genome, December 2014 →Step 1: bam --> pileup
- 22:08, 11 December 2014 diff hist -16 SeqShop: Ancestry On Your Own Genome, December 2014 →Step 1: bam --> pileup
- 22:05, 11 December 2014 diff hist +718 SeqShop: Ancestry On Your Own Genome, December 2014
- 21:30, 11 December 2014 diff hist 0 SeqShop: Calling Your Own Genome, December 2014
- 12:43, 11 December 2014 diff hist +44 SeqShop: December 2014
- 12:43, 11 December 2014 diff hist 0 N File:Seqshop genetic association analysis 141211.pdf current
- 11:39, 11 December 2014 diff hist +36 SeqShop: Calling Your Own Genome, December 2014 →Checking Completion
- 22:40, 10 December 2014 diff hist +169 SeqShop: Calling Your Own Genome, December 2014 →Friday: Reviewing SNPCALL Results
- 22:34, 10 December 2014 diff hist 0 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Step 1: bam --> pileup
- 22:33, 10 December 2014 diff hist +2 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Getting started
- 22:29, 10 December 2014 diff hist +60 SeqShop: Ancestry On Your Own Genome, December 2014 →Return to Calling your own Genome
- 22:26, 10 December 2014 diff hist +200 SeqShop: Calling Your Own Genome, December 2014 →Friday
- 22:25, 10 December 2014 diff hist +217 SeqShop: Ancestry On Your Own Genome, December 2014 →Step 1: bam --> pileup
- 22:21, 10 December 2014 diff hist +1 SeqShop: Ancestry On Your Own Genome, December 2014 →Setup your terminal
- 22:21, 10 December 2014 diff hist +36 SeqShop: Ancestry On Your Own Genome, December 2014
- 22:19, 10 December 2014 diff hist +179 SeqShop: Ancestry On Your Own Genome, December 2014
- 22:17, 10 December 2014 diff hist -283 SeqShop: Ancestry On Your Own Genome, December 2014
- 22:06, 10 December 2014 diff hist -62 SeqShop: Calling Your Own Genome, December 2014
- 22:06, 10 December 2014 diff hist -67 SeqShop: Calling Your Own Genome, December 2014 →Friday
- 21:59, 10 December 2014 diff hist +118 SeqShop: Calling Your Own Genome, December 2014 →Friday
- 21:45, 10 December 2014 diff hist +208 SeqShop: Calling Your Own Genome, December 2014 →Association Analysis Tutorial
- 21:41, 10 December 2014 diff hist +348 SeqShop: Genetic Association Analysis Practical, December 2014 →Setup in person at the SeqShop Workshop
- 21:33, 10 December 2014 diff hist +114 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup your run environment
- 21:29, 10 December 2014 diff hist +3 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup in person at the SeqShop Workshop
- 21:28, 10 December 2014 diff hist -13 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup in person at the SeqShop Workshop
- 21:27, 10 December 2014 diff hist +176 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup in person at the SeqShop Workshop
- 21:23, 10 December 2014 diff hist +13 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 21:17, 10 December 2014 diff hist +2 SeqShop: Calling Your Own Genome, December 2014 →Friday: Reviewing SNPCALL Results
- 21:16, 10 December 2014 diff hist +658 SeqShop: Calling Your Own Genome, December 2014 →Friday: Reviewing Indel Results
- 21:09, 10 December 2014 diff hist +15 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 21:08, 10 December 2014 diff hist +14 SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 21:05, 10 December 2014 diff hist -15 Template:SeqShopRemoteEnv current
- 20:56, 10 December 2014 diff hist +88 SeqShop: December 2014
- 20:53, 10 December 2014 diff hist +193 SeqShop: Ancestry On Your Own Genome, December 2014 →Visualizing Ancestry
- 20:51, 10 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014 →Thursday
- 20:50, 10 December 2014 diff hist +7 SeqShop: Calling Your Own Genome, December 2014 →Checking Completion
- 20:46, 10 December 2014 diff hist -90 SeqShop: Calling Your Own Genome, December 2014 →Thursday
- 20:43, 10 December 2014 diff hist +892 SeqShop: Calling Your Own Genome, December 2014
- 20:23, 10 December 2014 diff hist -2 SeqShop: December 2014
- 20:23, 10 December 2014 diff hist -28 SeqShop: December 2014
- 20:08, 10 December 2014 diff hist +144 SeqShop: Estimates of Genetic Ancestry Practical, December 2014 →Visualizing results
- 20:07, 10 December 2014 diff hist +24 SeqShop: December 2014
- 20:06, 10 December 2014 diff hist 0 N File:DecWorshop2014-ancestry.pdf current
- 18:01, 10 December 2014 diff hist 0 SeqShop: December 2014
- 12:33, 10 December 2014 diff hist +37 SeqShop: Analysis of Structural Variation Practical, December 2014 →Setup your run environment
- 11:25, 10 December 2014 diff hist +4 SeqShop: Calling Your Own Genome, December 2014 →Looking at final INDEL VCF
- 11:18, 10 December 2014 diff hist +100 SeqShop: Calling Your Own Genome, December 2014
- 10:51, 10 December 2014 diff hist +445 SeqShop: Calling Your Own Genome, December 2014 →Configuring SnpCall
- 10:43, 10 December 2014 diff hist +2 SeqShop: Calling Your Own Genome, December 2014 →Structural Variation Tutorial
- 10:42, 10 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014
- 10:37, 10 December 2014 diff hist +458 SeqShop: Calling Your Own Genome, December 2014 →Checking if INDEL Completed
- 19:34, 9 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014 →Thursday
- 19:34, 9 December 2014 diff hist -49 SeqShop: Calling Your Own Genome, December 2014 →Log Out
- 19:34, 9 December 2014 diff hist -215 SeqShop: Calling Your Own Genome, December 2014 →Resume screen
- 19:33, 9 December 2014 diff hist -341 SeqShop: Calling Your Own Genome, December 2014
- 19:28, 9 December 2014 diff hist +398 SeqShop: Calling Your Own Genome, December 2014
- 19:25, 9 December 2014 diff hist +1,656 SeqShop: Calling Your Own Genome, December 2014
- 19:25, 9 December 2014 diff hist +139 SeqShop: Analysis of Structural Variation Practical, December 2014
- 19:24, 9 December 2014 diff hist +91 SeqShop: December 2014
- 19:23, 9 December 2014 diff hist +7 SeqShop: December 2014
- 19:02, 9 December 2014 diff hist +89 SeqShop: December 2014
- 18:52, 9 December 2014 diff hist +23 SeqShop: December 2014
- 18:52, 9 December 2014 diff hist 0 File:Mapping and assemblyDec2014.pdf Mktrost uploaded a new version of "File:Mapping and assemblyDec2014.pdf" current
- 18:50, 9 December 2014 diff hist 0 N File:Dec2014 Analysis of SV.pdf current
- 13:57, 9 December 2014 diff hist +41 SeqShop: December 2014
- 13:56, 9 December 2014 diff hist 0 File:Variant Calling and Filtering for INDELs.pdf Mktrost uploaded a new version of "File:Variant Calling and Filtering for INDELs.pdf" current
- 11:24, 9 December 2014 diff hist +102 SeqShop: December 2014
- 11:21, 9 December 2014 diff hist +79 SeqShop: Calling Your Own Genome, December 2014 →Setup
- 00:09, 9 December 2014 diff hist +1 SeqShop: Calling Your Own Genome, December 2014 →Indel Step 2 (Day 2): Checking Indel
- 00:08, 9 December 2014 diff hist +2,998 SeqShop: Calling Your Own Genome, December 2014 →Indel Step 2 (Day 2): Checking Indel
- 23:23, 8 December 2014 diff hist +208 SeqShop: Calling Your Own Genome, December 2014
- 23:22, 8 December 2014 diff hist +2,515 SeqShop: Calling Your Own Genome, December 2014
- 23:15, 8 December 2014 diff hist -1 SeqShop: Calling Your Own Genome, December 2014 →Configuration Updates
- 23:14, 8 December 2014 diff hist -2 SeqShop: Calling Your Own Genome, December 2014 →Configuration Updates
- 23:08, 8 December 2014 diff hist -1,236 SeqShop: Calling Your Own Genome, December 2014
- 22:55, 8 December 2014 diff hist +8 SeqShop: Calling Your Own Genome, December 2014
- 22:54, 8 December 2014 diff hist -85 SeqShop: Calling Your Own Genome, December 2014 →Running SnpCall
- 22:50, 8 December 2014 diff hist +2 SeqShop: Calling Your Own Genome, December 2014 →Configuring SnpCall
- 22:50, 8 December 2014 diff hist +2 SeqShop: Calling Your Own Genome, December 2014 →List of BAMs
- 22:48, 8 December 2014 diff hist +182 SeqShop: Calling Your Own Genome, December 2014 →Log Out
- 22:11, 8 December 2014 diff hist -1,473 SeqShop: Calling Your Own Genome, December 2014 →Chromosome 20
- 21:46, 8 December 2014 diff hist 0 SeqShop: Genetic Association Analysis Practical, December 2014
- 13:34, 8 December 2014 diff hist +948 SeqShop: Calling Your Own Genome, December 2014
- 12:38, 8 December 2014 diff hist -335 SeqShop: Calling Your Own Genome, December 2014 →Setup
- 12:37, 8 December 2014 diff hist -3 SeqShop: Calling Your Own Genome, December 2014 →Setup
- 11:08, 8 December 2014 diff hist +147 SeqShop: December 2014
- 10:39, 8 December 2014 diff hist 0 File:Mapping and assemblyDec2014.pdf Mktrost uploaded a new version of "File:Mapping and assemblyDec2014.pdf"
- 10:24, 8 December 2014 diff hist 0 SeqShop: December 2014
- 10:23, 8 December 2014 diff hist +294 SeqShop: Aligning Your Own Genome, December 2014 →Recalibration Comparison current
- 10:18, 8 December 2014 diff hist 0 N File:QplotComp.pdf current
- 10:14, 8 December 2014 diff hist +28 SeqShop: December 2014
- 10:13, 8 December 2014 diff hist 0 N File:Mapping and assemblyDec2014.pdf
- 00:53, 8 December 2014 diff hist +27 SeqShop: December 2014
- 00:31, 8 December 2014 diff hist 0 N File:Sequencing symposium 2014.pptx current
- 23:47, 7 December 2014 diff hist +4 SeqShop: December 2014
- 23:47, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - Linux.pdf" current
- 23:08, 7 December 2014 diff hist +799 SeqShop: Aligning Your Own Genome, December 2014 →Quality Control Output
- 22:56, 7 December 2014 diff hist +739 SeqShop: Aligning Your Own Genome, December 2014 →Quality Control Output
- 22:28, 7 December 2014 diff hist +165 SeqShop: Aligning Your Own Genome, December 2014 →Quality Control Output
- 22:27, 7 December 2014 diff hist +476 SeqShop: Aligning Your Own Genome, December 2014 →Alignment Pipeline Output
- 22:15, 7 December 2014 diff hist +85 SeqShop: Aligning Your Own Genome, December 2014 →FEEDBACK!
- 22:10, 7 December 2014 diff hist -1,437 SeqShop: Aligning Your Own Genome, December 2014
- 22:07, 7 December 2014 diff hist +1,634 SeqShop: Calling Your Own Genome, December 2014
- 22:03, 7 December 2014 diff hist +12 SeqShop: Aligning Your Own Genome, December 2014 →Created a GotCloud Configuration File
- 21:54, 7 December 2014 diff hist 0 SeqShop: Aligning Your Own Genome, December 2014 →Create your GotCloud Configuration File
- 21:54, 7 December 2014 diff hist +81 SeqShop: Aligning Your Own Genome, December 2014 →Locating your FASTQs
- 21:52, 7 December 2014 diff hist -6,504 SeqShop: Aligning Your Own Genome, December 2014 →I got sequence, how to I get my data ready to run?
- 21:39, 7 December 2014 diff hist +47 SeqShop: Aligning Your Own Genome, December 2014 →Goals of This Session
- 21:30, 7 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Running GotCloud Indel
- 21:26, 7 December 2014 diff hist -2 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Running GotCloud Indel
- 21:26, 7 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud Indel Input files
- 21:25, 7 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud Indel Input files
- 21:22, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - GotCloud indel.pdf current
- 21:21, 7 December 2014 diff hist +106 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Goals of This Session
- 21:19, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud snpcall.pdf"
- 20:30, 7 December 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Running GotCloud Genotype Refinement
- 20:24, 7 December 2014 diff hist 0 File:Vcfsout.png Mktrost uploaded a new version of "File:Vcfsout.png" current
- 20:04, 7 December 2014 diff hist -177 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 20:00, 7 December 2014 diff hist 0 File:SnpcallStartNew.png Mktrost uploaded a new version of "File:SnpcallStartNew.png" current
- 19:58, 7 December 2014 diff hist -1 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 19:58, 7 December 2014 diff hist -1 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 19:54, 7 December 2014 diff hist +108 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 19:52, 7 December 2014 diff hist 0 File:BamList2.png Mktrost uploaded a new version of "File:BamList2.png" current
- 19:46, 7 December 2014 diff hist +52 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM List File
- 19:43, 7 December 2014 diff hist +19 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM List File
- 19:43, 7 December 2014 diff hist 0 File:BamindexNew.png Mktrost uploaded a new version of "File:BamindexNew.png" current
- 19:42, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud snpcall.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud snpcall.pdf"
- 19:21, 7 December 2014 diff hist +60 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Introduction
- 19:20, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - GotCloud snpcall.pdf
- 18:26, 7 December 2014 diff hist +41 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Logging Off
- 18:02, 7 December 2014 diff hist +124 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 17:59, 7 December 2014 diff hist 0 File:GcalignStartNew.png Mktrost uploaded a new version of "File:GcalignStartNew.png" current
- 17:53, 7 December 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 17:39, 7 December 2014 diff hist +539 Template:SeqShopLogin
- 17:33, 7 December 2014 diff hist +83 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup your run environment
- 17:26, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - GotCloud Align.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - GotCloud Align.pdf" current
- 16:17, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - Linux.pdf"
- 15:24, 7 December 2014 diff hist +158 SeqShop: Aligning Your Own Genome, December 2014
- 15:22, 7 December 2014 diff hist 0 N File:Sequence Analysis Workshop-Risks viewing genetic information Dec2014.pdf current
- 14:02, 7 December 2014 diff hist +90 SeqShop: December 2014
- 14:01, 7 December 2014 diff hist 0 N File:SeqShopScheduleDec2014.pdf current
- 13:59, 7 December 2014 diff hist +53 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Introduction
- 13:56, 7 December 2014 diff hist -2 SeqShop: December 2014
- 13:55, 7 December 2014 diff hist 0 File:Dec2014 SeqShop - Linux.pdf Mktrost uploaded a new version of "File:Dec2014 SeqShop - Linux.pdf"
- 13:54, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - Linux.pdf
- 12:01, 7 December 2014 diff hist +53 SeqShop: December 2014
- 00:19, 7 December 2014 diff hist +8 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Introduction
- 00:18, 7 December 2014 diff hist 0 N File:Dec2014 SeqShop - GotCloud Align.pdf
- 23:27, 6 December 2014 diff hist +4 SeqShop: Ancestry On Your Own Genome, December 2014 →Setup
- 23:26, 6 December 2014 diff hist -136 SeqShop: Ancestry On Your Own Genome, December 2014 →Setup
- 17:57, 6 December 2014 diff hist +155 SeqShop: Calling Your Own Genome, December 2014
- 17:49, 6 December 2014 diff hist +155 SeqShop: Aligning Your Own Genome, December 2014 →Goals of This Session
- 15:47, 6 December 2014 diff hist -482 SeqShop: Aligning Your Own Genome, December 2014 →I didn't get sequenced, what can I do?
- 15:45, 6 December 2014 diff hist -3 SeqShop: Aligning Your Own Genome, December 2014 →Goals of This Session
- 15:44, 6 December 2014 diff hist +115 SeqShop: Aligning Your Own Genome, December 2014
- 15:26, 6 December 2014 diff hist +700 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:14, 6 December 2014 diff hist +121 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:11, 6 December 2014 diff hist 0 File:IndelRef.png Mktrost uploaded a new version of "File:IndelRef.png": Reverted to version as of 19:10, 6 December 2014 current
- 15:11, 6 December 2014 diff hist +101 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Comparison with other data sets
- 15:11, 6 December 2014 diff hist 0 File:IndelRef.png Mktrost uploaded a new version of "File:IndelRef.png"
- 15:10, 6 December 2014 diff hist 0 File:IndelRef.png Mktrost uploaded a new version of "File:IndelRef.png"
- 01:22, 6 December 2014 diff hist +42 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Summary
- 01:16, 6 December 2014 diff hist +2 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Records
- 01:10, 6 December 2014 diff hist +10 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Records
- 01:07, 6 December 2014 diff hist -77 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Header
- 01:03, 6 December 2014 diff hist +166 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Did I find interesting variants?
- 01:00, 6 December 2014 diff hist +6 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Did I find interesting variants?
- 00:59, 6 December 2014 diff hist +152 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud indel Ouptut
- 00:55, 6 December 2014 diff hist 0 File:IndelOut.png Mktrost uploaded a new version of "File:IndelOut.png" current
- 23:50, 5 December 2014 diff hist +38 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Setup your run environment
- 23:50, 5 December 2014 diff hist +19 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup in person at the SeqShop Workshop
- 23:49, 5 December 2014 diff hist 0 File:Setup.png Mktrost uploaded a new version of "File:Setup.png" current
- 23:38, 5 December 2014 diff hist +38 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Setup your run environment
- 13:46, 3 December 2014 diff hist +24 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Improvements
- 11:09, 2 December 2014 diff hist -54 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 18:06, 1 December 2014 diff hist +78 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud indel Ouptut
- 14:48, 1 December 2014 diff hist -22 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Improvements
- 22:44, 26 November 2014 diff hist 0 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 →Examining GotCloud Indel Input files
- 22:41, 26 November 2014 diff hist +42 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 11:43, 26 November 2014 diff hist +65 N SeqShop: Ancestry On Your Own Genome Mktrost moved page SeqShop: Ancestry On Your Own Genome to SeqShop: Ancestry On Your Own Genome, December 2014 current
- 11:43, 26 November 2014 diff hist 0 m SeqShop: Ancestry On Your Own Genome, December 2014 Mktrost moved page SeqShop: Ancestry On Your Own Genome to SeqShop: Ancestry On Your Own Genome, December 2014
- 11:43, 26 November 2014 diff hist +61 N SeqShop: Calling Your Own Genome Mktrost moved page SeqShop: Calling Your Own Genome to SeqShop: Calling Your Own Genome, December 2014 current
- 11:43, 26 November 2014 diff hist 0 m SeqShop: Calling Your Own Genome, December 2014 Mktrost moved page SeqShop: Calling Your Own Genome to SeqShop: Calling Your Own Genome, December 2014
- 11:42, 26 November 2014 diff hist 0 SeqShop: December 2014
- 11:42, 26 November 2014 diff hist -25 SeqShop: December 2014
- 11:42, 26 November 2014 diff hist +346 SeqShop: December 2014
- 11:41, 26 November 2014 diff hist +73 N SeqShop: Friday - Practicing what we learned Mktrost moved page SeqShop: Friday - Practicing what we learned to SeqShop: Friday - Practicing what we learned, December 2014 current
- 11:41, 26 November 2014 diff hist +76 N SeqShop: Genetic Association Analysis Practical Mktrost moved page SeqShop: Genetic Association Analysis Practical to SeqShop: Genetic Association Analysis Practical, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Genetic Association Analysis Practical, December 2014 Mktrost moved page SeqShop: Genetic Association Analysis Practical to SeqShop: Genetic Association Analysis Practical, December 2014
- 11:41, 26 November 2014 diff hist +77 N SeqShop: Estimates of Genetic Ancestry Practical Mktrost moved page SeqShop: Estimates of Genetic Ancestry Practical to SeqShop: Estimates of Genetic Ancestry Practical, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Estimates of Genetic Ancestry Practical, December 2014 Mktrost moved page SeqShop: Estimates of Genetic Ancestry Practical to SeqShop: Estimates of Genetic Ancestry Practical, December 2014
- 11:41, 26 November 2014 diff hist +62 N SeqShop: Aligning Your Own Genome Mktrost moved page SeqShop: Aligning Your Own Genome to SeqShop: Aligning Your Own Genome, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Aligning Your Own Genome, December 2014 Mktrost moved page SeqShop: Aligning Your Own Genome to SeqShop: Aligning Your Own Genome, December 2014
- 11:41, 26 November 2014 diff hist +80 N SeqShop: Analysis of Structural Variation Practical Mktrost moved page SeqShop: Analysis of Structural Variation Practical to SeqShop: Analysis of Structural Variation Practical, December 2014 current
- 11:41, 26 November 2014 diff hist 0 m SeqShop: Analysis of Structural Variation Practical, December 2014 Mktrost moved page SeqShop: Analysis of Structural Variation Practical to SeqShop: Analysis of Structural Variation Practical, December 2014
- 11:40, 26 November 2014 diff hist +88 N SeqShop: Variant Calling and Filtering for INDELs Practical Mktrost moved page SeqShop: Variant Calling and Filtering for INDELs Practical to SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 11:40, 26 November 2014 diff hist 0 m SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for INDELs Practical to SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 13:30, 24 November 2014 diff hist 0 N File:CampusMap.jpg current
- 23:20, 23 November 2014 diff hist -3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Improvements
- 23:13, 23 November 2014 diff hist -182 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Did I find interesting variants?
- 23:13, 23 November 2014 diff hist 0 N File:SamtoolstviewsnpNew.png current
- 23:06, 23 November 2014 diff hist +28 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Genotype Refinement Output
- 23:04, 23 November 2014 diff hist -6 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Genotype Refinement Output
- 23:02, 23 November 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Running GotCloud Genotype Refinement
- 23:01, 23 November 2014 diff hist +3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Running GotCloud Genotype Refinement
- 23:01, 23 November 2014 diff hist 0 N File:GcldrefineOutNew.png current
- 22:53, 23 November 2014 diff hist -1 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Genotype Refinement Input
- 22:50, 23 November 2014 diff hist +3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Filtered VCF
- 22:49, 23 November 2014 diff hist 0 N File:SvmFiltGLNew.png current
- 22:46, 23 November 2014 diff hist +15 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Examining GotCloud SnpCall Output
- 22:38, 23 November 2014 diff hist 0 N File:SvmFiltNew.png current
- 22:31, 23 November 2014 diff hist +6 Understanding vcf-summary output →Example output from vcf-summary current
- 22:31, 23 November 2014 diff hist +3 Understanding vcf-summary output →Example output from vcf-summary
- 22:31, 23 November 2014 diff hist 0 N File:FilterSumNew.png current
- 22:27, 23 November 2014 diff hist 0 N File:GcsnpcallOutNew.png current
- 22:19, 23 November 2014 diff hist +5 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 22:16, 23 November 2014 diff hist 0 N File:SnpcallStartNew.png
- 22:07, 23 November 2014 diff hist +3 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Run GotCloud SnpCall
- 22:07, 23 November 2014 diff hist 0 N File:SnpcallDiagramNew.png
- 21:59, 23 November 2014 diff hist -2 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM List File
- 21:59, 23 November 2014 diff hist 0 N File:BamList2.png
- 21:42, 23 November 2014 diff hist 0 N File:BamList1.png current
- 21:38, 23 November 2014 diff hist +48 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM Index File
- 21:29, 23 November 2014 diff hist 0 N File:BamindexNew.png
- 21:20, 23 November 2014 diff hist -1 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →GotCloud BAM Index File
- 21:16, 23 November 2014 diff hist +13 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 21:16, 23 November 2014 diff hist -13 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 →Setup in person at the SeqShop Workshop
- 20:54, 23 November 2014 diff hist +137 SeqShop: December 2014
- 20:53, 23 November 2014 diff hist +86 N SeqShop: Variant Calling and Filtering for SNPs Practical Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 20:53, 23 November 2014 diff hist 0 m SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 20:52, 23 November 2014 diff hist -13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Logging Off
- 20:51, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Accessing BAMs by Position
- 20:51, 23 November 2014 diff hist 0 File:TviewNew.png Mktrost uploaded a new version of "File:TviewNew.png" current
- 20:48, 23 November 2014 diff hist 0 N File:TviewNew.png
- 19:44, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →BAM Files
- 19:43, 23 November 2014 diff hist 0 N File:BamRecNew.png current
- 19:32, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →QC Metrics
- 19:32, 23 November 2014 diff hist 0 N File:QplotpdfNew.png current
- 19:25, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →QC Metrics
- 19:23, 23 November 2014 diff hist 0 N File:QplotsNew.png current
- 19:21, 23 November 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →QC Metrics
- 19:00, 23 November 2014 diff hist +6 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Examining GotCloud Align Output
- 18:59, 23 November 2014 diff hist 0 N File:Contam1New.png current
- 18:51, 23 November 2014 diff hist 0 N File:GcalignOutMNew.png current
- 18:41, 23 November 2014 diff hist +124 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 18:39, 23 November 2014 diff hist 0 N File:GcalignStartNew.png
- 18:08, 23 November 2014 diff hist 0 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud Configuration File
- 18:07, 23 November 2014 diff hist 0 N File:GcConfNew.png
- 18:07, 23 November 2014 diff hist +3 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud Configuration File
- 17:57, 23 November 2014 diff hist -9 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud FASTQ List File
- 17:56, 23 November 2014 diff hist 0 File:FqListFASTQ2.png Mktrost uploaded a new version of "File:FqListFASTQ2.png" current
- 17:55, 23 November 2014 diff hist 0 N File:FqListFASTQ2.png
- 17:01, 23 November 2014 diff hist 0 N File:FqindexNew.png current
- 16:58, 23 November 2014 diff hist +73 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →GotCloud FASTQ Index File
- 16:14, 21 November 2014 diff hist +263 Nm User talk:Kjablons Welcome! current
- 16:14, 21 November 2014 diff hist +1,093 Nm User:Kjablons Creating user page for new user. current
- 14:34, 21 November 2014 diff hist 0 File:AlignDiagram.png Mktrost uploaded a new version of "File:AlignDiagram.png" current
- 14:32, 21 November 2014 diff hist +4 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Run GotCloud Align
- 12:05, 21 November 2014 diff hist 0 File:Setup.png Mktrost uploaded a new version of "File:Setup.png"
- 11:45, 21 November 2014 diff hist +13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup when running on your own outside of the SeqShop Workshop
- 11:45, 21 November 2014 diff hist -13 SeqShop: Sequence Mapping and Assembly Practical, December 2014 →Setup in person at the SeqShop Workshop
- 10:46, 21 November 2014 diff hist +263 Nm User talk:ZhaominWu Welcome! current
- 10:46, 21 November 2014 diff hist +372 Nm User:ZhaominWu Creating user page for new user. current
- 10:45, 21 November 2014 diff hist +263 Nm User talk:Mkarhade Welcome! current
- 10:45, 21 November 2014 diff hist +390 Nm User:Mkarhade Creating user page for new user. current
- 19:30, 20 November 2014 diff hist 0 File:Bam.png Mktrost uploaded a new version of "File:Bam.png" current
- 16:33, 19 November 2014 diff hist +77 N SeqShop: Sequence Mapping and Assembly Practical Mktrost moved page SeqShop: Sequence Mapping and Assembly Practical to SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 16:33, 19 November 2014 diff hist 0 m SeqShop: Sequence Mapping and Assembly Practical, December 2014 Mktrost moved page SeqShop: Sequence Mapping and Assembly Practical to SeqShop: Sequence Mapping and Assembly Practical, December 2014
- 14:38, 13 November 2014 diff hist +22 SeqShop: Genetic Association Analysis Practical, June 2014
- 14:38, 13 November 2014 diff hist +11 SeqShop: Estimates of Genetic Ancestry Practical, June 2014
- 14:37, 13 November 2014 diff hist +44 SeqShop: Analysis of Structural Variation Practical, June 2014 current
- 14:37, 13 November 2014 diff hist +33 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 current
- 14:36, 13 November 2014 diff hist +33 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 current
- 14:35, 13 November 2014 diff hist 0 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:34, 13 November 2014 diff hist +22 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:32, 13 November 2014 diff hist +203 SeqShop: Ancestry On Your Own Genome, June 2014 current
- 14:31, 13 November 2014 diff hist +2,676 N SeqShop: Ancestry On Your Own Genome, December 2014 Created page with "{{SeqShopLogin}} == Setup == Set these values. If you used a different path for any of these, please update here. Also, be sure to specify your sample name instead of Sampl..."
- 14:31, 13 November 2014 diff hist 0 m SeqShop: Ancestry On Your Own Genome, June 2014 Mktrost moved page SeqShop: Ancestry On Your Own Genome to SeqShop: Ancestry On Your Own Genome, June 2014 without leaving a redirect
- 14:31, 13 November 2014 diff hist +234 SeqShop: Friday - Practicing what we learned, June 2014 current
- 14:30, 13 November 2014 diff hist +200 SeqShop: Calling Your Own Genome, June 2014 current
- 14:30, 13 November 2014 diff hist +4,418 N SeqShop: Calling Your Own Genome, December 2014 Created page with "{{SeqShopLogin}} == Setup == Set these values. If you used a different path for any of these, please update here. Also, be sure to specify your sample name instead of Sampl..."
- 14:29, 13 November 2014 diff hist 0 m SeqShop: Calling Your Own Genome, June 2014 Mktrost moved page SeqShop: Calling Your Own Genome to SeqShop: Calling Your Own Genome, June 2014 without leaving a redirect
- 14:28, 13 November 2014 diff hist 0 m SeqShop: Friday - Practicing what we learned, June 2014 Mktrost moved page SeqShop: Friday - Practicing what we learned to SeqShop: Friday - Practicing what we learned, June 2014 without leaving a redirect
- 14:27, 13 November 2014 diff hist +19,651 N SeqShop: Genetic Association Analysis Practical, December 2014 Created page with "== Introduction == View Lecture Slides Media:Seqshop association practice 2014 06.pdf|View Introductory Slides for Practical Sessi..."
- 14:27, 13 November 2014 diff hist +233 SeqShop: Genetic Association Analysis Practical, June 2014
- 14:26, 13 November 2014 diff hist 0 m SeqShop: Genetic Association Analysis Practical, June 2014 Mktrost moved page SeqShop: Genetic Association Analysis Practical to SeqShop: Genetic Association Analysis Practical, June 2014 without leaving a redirect
- 14:26, 13 November 2014 diff hist +9,689 SeqShop: Estimates of Genetic Ancestry Practical, December 2014
- 14:26, 13 November 2014 diff hist +215 SeqShop: Estimates of Genetic Ancestry Practical, June 2014
- 14:25, 13 November 2014 diff hist +73 N SeqShop: Estimates of Genetic Ancestry Practical, December 2014 Mktrost moved page SeqShop: Estimates of Genetic Ancestry Practical to SeqShop: Estimates of Genetic Ancestry Practical, June 2014
- 14:25, 13 November 2014 diff hist 0 m SeqShop: Estimates of Genetic Ancestry Practical, June 2014 Mktrost moved page SeqShop: Estimates of Genetic Ancestry Practical to SeqShop: Estimates of Genetic Ancestry Practical, June 2014
- 14:25, 13 November 2014 diff hist +11,475 N SeqShop: Aligning Your Own Genome, December 2014 Created page with "== First Things First == *Helpful reference to many tools: ** http://infoplatter.wordpress.com/2014/04/06/bioinformaticians-pocket-reference/ *** links to "cheat-sheets", incl..."
- 14:25, 13 November 2014 diff hist +200 SeqShop: Aligning Your Own Genome, June 2014 current
- 14:24, 13 November 2014 diff hist 0 m SeqShop: Aligning Your Own Genome, June 2014 Mktrost moved page SeqShop: Aligning Your Own Genome to SeqShop: Aligning Your Own Genome, June 2014 without leaving a redirect
- 14:24, 13 November 2014 diff hist +17,120 N SeqShop: Analysis of Structural Variation Practical, December 2014 Created page with "== Goals of This Session == * What we want to learn is calling large deletions using GenomeSTRiP implemented in GotCloud pipeline ** How to prepare metadata for running Ge..."
- 14:24, 13 November 2014 diff hist +218 SeqShop: Analysis of Structural Variation Practical, June 2014
- 14:23, 13 November 2014 diff hist 0 m SeqShop: Analysis of Structural Variation Practical, June 2014 Mktrost moved page SeqShop: Analysis of Structural Variation Practical to SeqShop: Analysis of Structural Variation Practical, June 2014 without leaving a redirect
- 14:22, 13 November 2014 diff hist +226 SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
- 14:22, 13 November 2014 diff hist +22,606 SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
- 14:22, 13 November 2014 diff hist +84 N SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for INDELs Practical to SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
- 14:22, 13 November 2014 diff hist 0 m SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for INDELs Practical to SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
- 14:21, 13 November 2014 diff hist +282 SeqShop: June 2014 current
- 14:20, 13 November 2014 diff hist +1 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:20, 13 November 2014 diff hist +8 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:15, 13 November 2014 diff hist +19,674 SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
- 14:12, 13 November 2014 diff hist +215 SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:12, 13 November 2014 diff hist +214 SeqShop: Sequence Mapping and Assembly Practical, June 2014
- 14:11, 13 November 2014 diff hist +16,464 N SeqShop: Sequence Mapping and Assembly Practical, December 2014 Created page with "== Introduction == See the introductory slides for an intro to this tutorial. == Goals of This Session == * What we want to learn ** B..."
- 14:10, 13 November 2014 diff hist 0 m SeqShop: Sequence Mapping and Assembly Practical, June 2014 Mktrost moved page SeqShop: Sequence Mapping and Assembly Practical to SeqShop: Sequence Mapping and Assembly Practical, June 2014 without leaving a redirect
- 14:09, 13 November 2014 diff hist +82 N SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:09, 13 November 2014 diff hist 0 m SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 Mktrost moved page SeqShop: Variant Calling and Filtering for SNPs Practical to SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
- 14:06, 13 November 2014 diff hist +1,543 N SeqShop: December 2014 Created page with "Sequence Analysis Workshop December 8-12, 2014: http://seqshop.sph.umich.edu/ {| class="wikitable" cellpadding=5 |- ! style="background:#ABE" | Monday Lecture !! style="back..."
- 14:04, 13 November 2014 diff hist +129 Short Workshops →Low Pass Whole Genomes
- 14:04, 13 November 2014 diff hist +32 N SeqShop Mktrost moved page SeqShop to SeqShop: June 2014: Multiple SeqShops current
- 14:04, 13 November 2014 diff hist 0 m SeqShop: June 2014 Mktrost moved page SeqShop to SeqShop: June 2014: Multiple SeqShops
- 16:01, 10 November 2014 diff hist 0 N File:Main.cpp.doc current
- 16:00, 10 November 2014 diff hist 0 N File:Goncalo'sClass 11 10 2014.pdf current
- 10:49, 7 November 2014 diff hist +95 StarCluster →Running GotCloud on StarCluster current
- 16:49, 5 November 2014 diff hist +771 Amazon Storage current
- 12:57, 31 October 2014 diff hist +146 StarCluster →Terminate the Demo Cluster
- 12:55, 31 October 2014 diff hist +179 GotCloud: Amazon Demo current
- 12:53, 31 October 2014 diff hist -359 StarCluster
- 12:53, 31 October 2014 diff hist -262 StarCluster →Running GotCloud on StarCluster
- 12:52, 31 October 2014 diff hist -560 GotCloud: Amazon Demo →Run GotCloud ldrefine
- 12:52, 31 October 2014 diff hist +1,470 GotCloud: Amazon Demo →Run GotCloud Indel
- 12:48, 31 October 2014 diff hist +1,102 GotCloud: Amazon Demo
- 12:46, 31 October 2014 diff hist +326 StarCluster →Run GotCloud Indel Demo
- 12:45, 31 October 2014 diff hist +303 StarCluster →Run GotCloud Demo Using StarCluster
- 12:14, 31 October 2014 diff hist -24 StarCluster →StarCluster Config Settings
- 12:13, 31 October 2014 diff hist +451 StarCluster →StarCluster Config Settings
- 12:08, 31 October 2014 diff hist +9 StarCluster
- 12:07, 31 October 2014 diff hist +1,708 StarCluster
- 11:22, 31 October 2014 diff hist +1,622 StarCluster →StarCluster and GotCloud
- 09:41, 31 October 2014 diff hist +1,566 StarCluster →Run GotCloud Demo Using StarCluster
- 09:37, 31 October 2014 diff hist 0 N File:Qhost.png current
- 09:34, 31 October 2014 diff hist 0 N File:Qstatf.png current
- 09:10, 31 October 2014 diff hist 0 File:Qstat.png Mktrost uploaded a new version of "File:Qstat.png" current
- 09:08, 31 October 2014 diff hist 0 N File:Qstat.png
- 08:38, 31 October 2014 diff hist +50 N GotCloud: Amazon Demo Setup Mktrost moved page GotCloud: Amazon Demo Setup to Template:GotCloud: Amazon Demo Setup current
- 08:38, 31 October 2014 diff hist 0 m Template:GotCloud: Amazon Demo Setup Mktrost moved page GotCloud: Amazon Demo Setup to Template:GotCloud: Amazon Demo Setup current
- 08:37, 31 October 2014 diff hist -1,618 GotCloud: Amazon Demo →Running the Demo on Already Running Node
- 08:37, 31 October 2014 diff hist +1,669 N Template:GotCloud: Amazon Demo Setup Created page with "{{{hdr|===}}} Examine the Setup {{{hdr|===}}} #After logging into the Amazon node as the ubuntu user, you should by default be in the ubuntu home directory: <code>/home/ubuntu..."
- 17:18, 30 October 2014 diff hist +2,798 StarCluster
- 15:56, 30 October 2014 diff hist +403 N GotCloud: AMIs Created page with " {| class="wikitable" style="margin: 1em 1em 1em 0; background-color: #f9f9f9; border: 1px #aaa solid; border-collapse: collapse;" border="1" |+ GotCloud Public AMIs ! GotClou..." current
- 12:26, 30 October 2014 diff hist +487 BamUtil: bam2FastQ
- 17:36, 29 October 2014 diff hist +358 StarCluster
- 17:35, 29 October 2014 diff hist +624 StarCluster
- 17:31, 29 October 2014 diff hist +1,556 N AWS Credentials Created page with " AWS Access Keys are required for interfacing with AWS through the command-line interface. * Different from the key pair used to validate logins If you have not setup AWS Cre..." current
- 15:31, 29 October 2014 diff hist -2 GotCloud: Amazon Demo →Examining SnpCall Output
- 10:59, 29 October 2014 diff hist +121 GotCloud: Variant Calling Pipeline →Results
- 10:56, 29 October 2014 diff hist -1,890 GotCloud: Variant Calling Pipeline
- 10:53, 29 October 2014 diff hist +149 GotCloud: Filters current
- 10:52, 29 October 2014 diff hist +69 GotCloud: Variant Calling Options →Hard Filtering Options
- 10:15, 29 October 2014 diff hist +882 GotCloud: Variant Calling Options →Hard Filtering Options
- 10:13, 29 October 2014 diff hist -10 GotCloud: Filters →Hard Filters
- 17:21, 28 October 2014 diff hist +2,502 GotCloud: Variant Calling Options →Hard Filtering Options
- 15:51, 28 October 2014 diff hist +373 GotCloud: Variant Calling Options
- 15:47, 28 October 2014 diff hist +1,357 GotCloud: Variant Calling Options →Options
- 10:35, 28 October 2014 diff hist +159 GotCloud: Variant Calling Options →Analysis Region Options
- 14:29, 24 October 2014 diff hist +294 GotCloud: Variant Calling Options →Analysis Region Options
- 14:28, 24 October 2014 diff hist +6,752 GotCloud: Variant Calling Options →Miscellaneous Options
- 12:10, 24 October 2014 diff hist +1,827 GotCloud: Variant Calling Options
- 11:56, 24 October 2014 diff hist +34 GotCloud: Variant Calling Options →Required Options
- 11:54, 24 October 2014 diff hist 0 GotCloud: Variant Calling Options
- 11:53, 24 October 2014 diff hist +3 GotCloud: Variant Calling Options →Cluster Options
- 11:53, 24 October 2014 diff hist +3 GotCloud: Variant Calling Options →Analysis Region Options
- 11:46, 24 October 2014 diff hist +1,836 GotCloud: Variant Calling Options
- 11:32, 24 October 2014 diff hist +213 GotCloud: Variant Calling Options
- 11:18, 24 October 2014 diff hist +2,366 N GotCloud: Variant Calling Options Created page with " {| class="wikitable" style="margin: 1em 1em 1em 0; background-color: #f9f9f9; border: 1px #aaa solid; border-collapse: collapse;" border="1" ! Command-line Flag !! Configura..."
- 10:17, 24 October 2014 diff hist -9 GotCloud: Variant Calling Pipeline →Additional Required User Config Files Settings
- 18:54, 23 October 2014 diff hist -1 GotCloud: Variant Calling Pipeline →Running
- 18:53, 23 October 2014 diff hist +230 GotCloud: Configuration current
- 18:49, 23 October 2014 diff hist -353 GotCloud: Variant Calling Pipeline →Example Configuration File
- 18:47, 23 October 2014 diff hist +238 GotCloud: Variant Calling Pipeline →Chromosome X Calling
- 18:45, 23 October 2014 diff hist +137 GotCloud: Variant Calling Pipeline →Chromosome X Calling
- 18:33, 23 October 2014 diff hist +151 GotCloud: Variant Calling Pipeline →Targeted/Exome Sequencing Settings
- 18:30, 23 October 2014 diff hist +161 GotCloud: Variant Calling Pipeline →Targeted/Exome Sequencing Settings
- 18:14, 23 October 2014 diff hist +280 GotCloud: Variant Calling Pipeline →Configuration File
- 18:10, 23 October 2014 diff hist +13 GotCloud: Variant Calling Pipeline →Running on a Cluster
- 18:09, 23 October 2014 diff hist -1,370 GotCloud: Variant Calling Pipeline →Running on a Cluster
- 18:08, 23 October 2014 diff hist +210 GotCloud: Configuration →Cluster Configuration
- 18:05, 23 October 2014 diff hist -1 GotCloud: Configuration
- 18:05, 23 October 2014 diff hist +4 GotCloud: Configuration
- 18:04, 23 October 2014 diff hist +32 GotCloud: Variant Calling Pipeline
- 18:02, 23 October 2014 diff hist -1,073 GotCloud: Alignment Pipeline →Configuration File
- 18:01, 23 October 2014 diff hist +1 GotCloud: Configuration
- 18:01, 23 October 2014 diff hist -665 GotCloud: Variant Calling Pipeline →Configuration File
- 17:59, 23 October 2014 diff hist +386 GotCloud: Configuration
- 17:48, 23 October 2014 diff hist +2,266 N GotCloud: Configuration Created page with "The GotCloud configuration file contains the run-time options, including software binaries and command line arguments. A default configuration file is automatically loaded. ..."
- 16:53, 23 October 2014 diff hist -14 GotCloud: Variant Calling Pipeline →BAM List File
- 16:52, 23 October 2014 diff hist +186 GotCloud: Variant Calling Pipeline →Running
- 16:49, 23 October 2014 diff hist +74 GotCloud: Variant Calling Pipeline →Input Data
- 16:47, 23 October 2014 diff hist +37 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 16:47, 23 October 2014 diff hist +96 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 14:14, 23 October 2014 diff hist +2 GotCloud: Genetic Reference and Resource Files
- 14:13, 23 October 2014 diff hist +55 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 14:12, 23 October 2014 diff hist +110 GotCloud: Genetic Reference and Resource Files →Genetic Reference and Resource Files
- 14:08, 23 October 2014 diff hist +83 GotCloud: Variant Calling Pipeline →Input Data
- 14:06, 23 October 2014 diff hist +15 GotCloud: Genetic Reference and Resource Files →INDEL VCF File(s)
- 14:05, 23 October 2014 diff hist +2 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 14:04, 23 October 2014 diff hist -360 GotCloud: Alignment Pipeline →Reference Files
- 14:04, 23 October 2014 diff hist +80 GotCloud: Genetic Reference and Resource Files →Additional files generated from the reference fasta
- 14:01, 23 October 2014 diff hist -52 GotCloud: Variant Calling Pipeline →Reference Files
- 14:00, 23 October 2014 diff hist -255 GotCloud: Variant Calling Pipeline →Input Data
- 13:59, 23 October 2014 diff hist -458 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 13:59, 23 October 2014 diff hist +59 GotCloud: Genetic Reference and Resource Files →Downloadable Reference and Resource Files
- 13:55, 23 October 2014 diff hist +2 GotCloud: Genetic Reference and Resource Files →Genetic Reference and Resource Files
- 13:55, 23 October 2014 diff hist +254 GotCloud: Genetic Reference and Resource Files →Genetic Reference and Resource Files
- 13:49, 23 October 2014 diff hist +342 GotCloud: Genetic Reference and Resource Files →INDEL VCF File(s)
- 13:47, 23 October 2014 diff hist +4 GotCloud: Genetic Reference and Resource Files
- 13:46, 23 October 2014 diff hist +3,565 GotCloud: Genetic Reference and Resource Files →Genetic Reference and Resource Files
- 12:50, 23 October 2014 diff hist +18 GotCloud: Genetic Reference and Resource Files
- 12:49, 23 October 2014 diff hist +61 GotCloud: Genetic Reference and Resource Files →Additional files generated from the reference fasta
- 12:49, 23 October 2014 diff hist -36 GotCloud: Genetic Reference and Resource Files →Using Your own Reference Files
- 12:49, 23 October 2014 diff hist -1,398 GotCloud: Genetic Reference and Resource Files →Human Reference
- 12:47, 23 October 2014 diff hist +26 GotCloud: Genetic Reference and Resource Files →Additional files generated from the reference fasta
- 12:47, 23 October 2014 diff hist +86 GotCloud: Genetic Reference and Resource Files →Human Reference Files
- 12:44, 23 October 2014 diff hist +628 GotCloud: Genetic Reference and Resource Files →Human Reference Files
- 11:51, 23 October 2014 diff hist +1,346 GotCloud: Genetic Reference and Resource Files →Required Files
- 10:35, 23 October 2014 diff hist +55 GotCloud: Alignment Pipeline →Reference Files
- 10:14, 23 October 2014 diff hist +263 GotCloud: Variant Calling Pipeline →Running the GotCloud Variant Calling Pipeline
- 10:04, 23 October 2014 diff hist +1 GotCloud: Alignment Pipeline →Alignment Pipeline Output
- 10:03, 23 October 2014 diff hist -6 Understanding QPLOT output current
- 16:50, 22 October 2014 diff hist +1,197 GotCloud: Alignment Pipeline →Alignment Pipeline Output
- 16:40, 22 October 2014 diff hist +851 GotCloud: Alignment Pipeline →Running the Alignment Pipeline
- 18:37, 19 October 2014 diff hist +140 GotCloud: Alignment Pipeline →Reference Files
- 18:34, 19 October 2014 diff hist -9 GotCloud: Alignment Pipeline →Required Settings
- 18:32, 19 October 2014 diff hist +159 GotCloud: Alignment Pipeline →Turning Off Optional Steps
- 18:30, 19 October 2014 diff hist -145 GotCloud: Alignment Pipeline →Reference Files
- 18:22, 19 October 2014 diff hist +391 GotCloud: Alignment Pipeline →FASTQ List File
- 18:16, 19 October 2014 diff hist +156 GotCloud: Alignment Pipeline →Optional Configurable Settings
- 18:13, 19 October 2014 diff hist +1,156 GotCloud: Alignment Pipeline →Command-Line Options
- 17:50, 19 October 2014 diff hist -1,950 GotCloud: Amazon Demo
- 17:49, 19 October 2014 diff hist +282 GotCloud: Alignment Pipeline →Running the GotCloud Alignment Pipeline
- 17:47, 19 October 2014 diff hist +338 GotCloud: Amazon Demo →Exit & Terminate
- 14:24, 17 October 2014 diff hist -4 GotCloud: Amazon Demo →Run GotCloud Indel
- 14:23, 17 October 2014 diff hist +1,094 GotCloud: Amazon Demo →Examining Indel Output
- 14:23, 17 October 2014 diff hist 0 N File:IndelTabix.png current
- 14:22, 17 October 2014 diff hist 0 N File:IndelLess.png current
- 14:21, 17 October 2014 diff hist 0 N File:IndelFinal.png current
- 14:13, 17 October 2014 diff hist 0 N File:IndelSnpOutput.png current
- 14:11, 17 October 2014 diff hist +171 GotCloud: Amazon Demo →Examining SnpCall Output
- 14:11, 17 October 2014 diff hist 0 N File:SnpVcfOutput.png current
- 14:10, 17 October 2014 diff hist 0 N File:SnpTabix.png current
- 14:07, 17 October 2014 diff hist 0 N File:SnpSummary.png current
- 14:06, 17 October 2014 diff hist +584 GotCloud: Amazon Demo →Run GotCloud SnpCall
- 14:06, 17 October 2014 diff hist 0 N File:IndelSuccess.png current
- 14:05, 17 October 2014 diff hist 0 N File:RunIndel.png current
- 14:03, 17 October 2014 diff hist +408 GotCloud: Amazon Demo →Examining SnpCall Output
- 12:57, 17 October 2014 diff hist +1,061 GotCloud: Amazon Demo →Examining SnpCall Output
- 12:50, 17 October 2014 diff hist 0 GotCloud: Amazon Demo →Examining SnpCall Output
- 10:59, 17 October 2014 diff hist 0 GotCloud: Amazon Demo →Examining SnpCall Output
- 10:58, 17 October 2014 diff hist +235 GotCloud: Amazon Demo →Examining SnpCall Output
- 10:57, 17 October 2014 diff hist 0 N File:SnpCallOutput2.png current
- 10:56, 17 October 2014 diff hist 0 N File:SnpCallOutput1.png current
- 10:06, 17 October 2014 diff hist +42 GotCloud: Amazon Demo →Run GotCloud SnpCall
- 10:05, 17 October 2014 diff hist +1 GotCloud: Amazon Demo →Examine the Setup
- 09:59, 17 October 2014 diff hist 0 File:RunSnpCall.png Mktrost uploaded a new version of "File:RunSnpCall.png" current
- 09:58, 17 October 2014 diff hist +680 GotCloud: Amazon Demo →Running the Demo on Already Running Node
- 09:58, 17 October 2014 diff hist 0 N File:SnpcallSuccess.png current
- 09:53, 17 October 2014 diff hist 0 N File:RunSnpCall.png
- 09:50, 17 October 2014 diff hist +2,247 GotCloud: Amazon Demo
- 09:45, 17 October 2014 diff hist 0 N File:ConfContents.png current
- 09:44, 17 October 2014 diff hist 0 N File:BedContents.png current