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  1. Minimac3 Cookbook : Pre-Phasing‏‎ (12,035 views)
  2. Genotype Likelihood Based Allele Balance‏‎ (12,009 views)
  3. Better X Sessions from Home (NX)‏‎ (11,917 views)
  4. Goncalo Abecasis: Interview with Christiana Fogg‏‎ (11,830 views)
  5. SeqShop: Association Analysis, May 2015‏‎ (11,772 views)
  6. BamUtil: asp‏‎ (11,742 views)
  7. Minimac Diagnostics‏‎ (11,734 views)
  8. BamUtil: dumpAsp‏‎ (11,731 views)
  9. C++ Class: FastQFile‏‎ (11,678 views)
  10. M3vcftools Usage‏‎ (11,675 views)
  11. Ligate Minimac‏‎ (11,656 views)
  12. LiftRsNumber.py‏‎ (11,612 views)
  13. LibStatGen Repository‏‎ (11,596 views)
  14. BamUtil: gapInfo‏‎ (11,575 views)
  15. PedScript‏‎ (11,538 views)
  16. Biostatistics 666: Hardy-Weinberg Equilibrium‏‎ (11,384 views)
  17. SAV File Format‏‎ (11,070 views)
  18. Sam Library Usage Examples‏‎ (11,011 views)
  19. METAL Glucose Example Script‏‎ (10,879 views)
  20. FamRvTest command‏‎ (10,849 views)
  21. BamUtil: findCigars‏‎ (10,807 views)
  22. Merlin‏‎ (10,705 views)
  23. Biostatistics 666: Modeling Recombination and Migration in the Coalescent‏‎ (10,591 views)
  24. FASTA‏‎ (10,488 views)
  25. BamUtil: FAQ‏‎ (10,411 views)
  26. Minimac3 Info (Older Version)‏‎ (10,311 views)
  27. Biostatistics 666: Introductory Lecture‏‎ (10,298 views)
  28. Amazon Single Node‏‎ (10,270 views)
  29. Biostatistics 666: Whole Genome Sequencing‏‎ (10,204 views)
  30. Biostatistics 666: Haplotype Estimation‏‎ (10,184 views)
  31. C++ Class: InputFile‏‎ (10,174 views)
  32. Sequencing Workshop Analysis of Indels‏‎ (10,132 views)
  33. GotCloud: Amazon‏‎ (10,118 views)
  34. Idriver‏‎ (10,034 views)
  35. Sayantan Das‏‎ (9,997 views)
  36. C++ Library: general Change Log‏‎ (9,980 views)
  37. Mount S3 Volume‏‎ (9,933 views)
  38. Biostatistics 666: Linkage Analysis in Sibling Pairs‏‎ (9,711 views)
  39. Biostatistics 615/815 Winter 2011‏‎ (9,702 views)
  40. Biostatistics 666: Maximum Likelihood Allele Frequency Estimation‏‎ (9,698 views)
  41. Fst‏‎ (9,695 views)
  42. BamUtil: dumpHeader‏‎ (9,630 views)
  43. C++ Class: SamRecord‏‎ (9,566 views)
  44. Alan Kwong‏‎ (9,563 views)
  45. Scott Vrieze‏‎ (9,535 views)
  46. Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium‏‎ (9,469 views)
  47. VcfRefGen‏‎ (9,468 views)
  48. Bayesdenovo‏‎ (9,396 views)
  49. M3vcftools‏‎ (9,339 views)
  50. PhoneHome‏‎ (9,253 views)
  51. BaseQualityCheck‏‎ (9,156 views)
  52. Screen Commands‏‎ (9,149 views)
  53. Biostatistics 666: Introduction to the E-M Algorithm‏‎ (9,128 views)
  54. Biostatistics 666: Introduction to the Coalescent‏‎ (9,111 views)
  55. VCF‏‎ (9,076 views)
  56. SAM/BAM Classes FAQs‏‎ (9,052 views)
  57. Zlib‏‎ (8,965 views)
  58. BamUtil: dumpRefInfo‏‎ (8,955 views)
  59. MaCH Options‏‎ (8,754 views)
  60. StatgenTools‏‎ (8,688 views)
  61. Meta Analysis of SNPxEnvironment Interaction‏‎ (8,643 views)
  62. LibStatGen: GLF‏‎ (8,639 views)
  63. C++ Library: FASTQ Change Log‏‎ (8,629 views)
  64. SeqShop: Estimates of Genetic Ancestry Practical, May 2015‏‎ (8,592 views)
  65. Biostatistics 666: Introduction to De Novo Assembly‏‎ (8,506 views)
  66. Gzip‏‎ (8,476 views)
  67. Genotype Likelihood based Inbreeding Coefficient‏‎ (8,463 views)
  68. FamLDCaller‏‎ (8,443 views)
  69. Configure GotCloud‏‎ (8,381 views)
  70. Tom Blackwell‏‎ (8,347 views)
  71. MappabilityScores‏‎ (8,311 views)
  72. BamUtil: indelDiscordance‏‎ (8,285 views)
  73. BamUtil: dumpIndex‏‎ (8,256 views)
  74. Biostatistics 666: Genotype Imputation‏‎ (8,157 views)
  75. Lars Fritsche‏‎ (8,110 views)
  76. Jennifer Bragg-Gresham‏‎ (8,075 views)
  77. Using Gotcloud on Flux‏‎ (7,987 views)
  78. GlfMerge‏‎ (7,960 views)
  79. GWAS‏‎ (7,923 views)
  80. Biostatistics 666: Haplotype Association Tests‏‎ (7,907 views)
  81. Biostatistics 666: Power of Genomewide Association Studies‏‎ (7,859 views)
  82. Biostatistics 666: Advanced Coalescent, Changing Population Size‏‎ (7,777 views)
  83. Tutorial: EMMAX GotCloud STOM: Lecture 8‏‎ (7,717 views)
  84. Biostatistics 666: Variance Component Analyses‏‎ (7,692 views)
  85. BamUtil: readReference‏‎ (7,667 views)
  86. Biostatistics 666: Association Tests in Structured Populations‏‎ (7,624 views)
  87. Biostatistics 666: Modeling Variation in the Coalescent‏‎ (7,577 views)
  88. Biostatistics 501: Main Page‏‎ (7,427 views)
  89. Xiaowei Zhan‏‎ (7,416 views)
  90. Vpeep‏‎ (7,403 views)
  91. Biostatistics 666: Core Competencies‏‎ (7,317 views)
  92. StatsTools‏‎ (7,269 views)
  93. Variant Call Pipeline‏‎ (7,179 views)
  94. METAL GENOMICCONTROL‏‎ (7,110 views)
  95. METAL CUSTOMVARIABLE‏‎ (7,105 views)
  96. Genotype Likelihood based Hardy-Weinberg Test‏‎ (7,073 views)
  97. BamUtil: readIndexedBam‏‎ (7,039 views)
  98. METAL ADDFILTER‏‎ (6,934 views)
  99. Biostatistics 815 Term Project‏‎ (6,898 views)
  100. Links to Sequence Analysis Tools‏‎ (6,876 views)
  101. Biostatistics 666: Multipoint Analysis in Sibling Pairs‏‎ (6,872 views)
  102. METAL SOURCE‏‎ (6,843 views)
  103. UMAKE-glfSingle‏‎ (6,822 views)
  104. Mary Kate Wing‏‎ (6,747 views)
  105. BamUtil: explainFlags‏‎ (6,719 views)
  106. SeqShop: Calling Your Own Genome, June 2014‏‎ (6,717 views)
  107. RAREFY FAQ‏‎ (6,683 views)
  108. Biostatistics 666: Advanced Coalescent, Computation with the Coalescent‏‎ (6,672 views)
  109. Biostatistics 666: Applications of the Lander-Green Algorithm‏‎ (6,671 views)
  110. Biostatistics 666: Analysis of Low Pass Sequence Data‏‎ (6,626 views)
  111. Minimac4 - Full List of Options‏‎ (6,579 views)
  112. ThunderVCF‏‎ (6,515 views)
  113. Gene Ontology‏‎ (6,504 views)
  114. BAM to FASTQ‏‎ (6,489 views)
  115. Tutorial: EMMAX GotCloud STOM: Lecture 5‏‎ (6,425 views)
  116. Kyoto Encyclopedia of Genes and Genomes‏‎ (6,396 views)
  117. Biostatistics 666: Contemporary Human Genetics‏‎ (6,392 views)
  118. METAL EFFECTLABEL‏‎ (6,361 views)
  119. Biostatistics 666: Relationship Checking‏‎ (6,350 views)
  120. METAL VERBOSE‏‎ (6,238 views)
  121. Biostatistics 666: Linkage Tests for Pairs of Individuals‏‎ (6,214 views)
  122. SplitRef‏‎ (6,152 views)
  123. IMPUTE2‏‎ (6,106 views)
  124. SeqShop: Aligning Your Own Genome, May 2015‏‎ (5,990 views)
  125. TinySimulator‏‎ (5,884 views)
  126. VcfGenomeStat‏‎ (5,868 views)
  127. Tutorial: EMMAX GotCloud STOM: Lecture 2‏‎ (5,864 views)
  128. Trial Enrichment‏‎ (5,849 views)
  129. METAL LOGPVALUE‏‎ (5,806 views)
  130. GotCloud: Filters‏‎ (5,799 views)
  131. Biostatistics 666: Analysis of Copy Number Using Sequence Data‏‎ (5,687 views)
  132. SeqShop: Aligning Your Own Genome, June 2014‏‎ (5,661 views)
  133. Biostatistics 830: Core Competencies‏‎ (5,658 views)
  134. Tandem Repeat Concepts‏‎ (5,657 views)
  135. METAL COLUMNCOUNTING‏‎ (5,655 views)
  136. SeqShop: Ancestry On Your Own Genome, June 2014‏‎ (5,630 views)
  137. Hardy Weinberg equilibrium‏‎ (5,621 views)
  138. SardiNIA project meeting July 15-16, 2013‏‎ (5,620 views)
  139. Example‏‎ (5,567 views)
  140. Biostatistics 830: Fall 2013 Edition‏‎ (5,325 views)
  141. Biostatistics 666: Advanced Haplotype Estimation‏‎ (5,237 views)
  142. Biostatistics 666: The Lander-Green Algorithm‏‎ (5,201 views)
  143. Garlic‏‎ (5,200 views)
  144. An example of using libcsg‏‎ (5,182 views)
  145. GotCloud: Reference Files‏‎ (5,129 views)
  146. Read Mapping‏‎ (5,126 views)
  147. Biostatistics 666: Copy Number Variation‏‎ (5,066 views)
  148. Biostatistics 666: The Possible Triangle Constraint‏‎ (4,912 views)
  149. 830 - MINIMAC::main()‏‎ (4,886 views)
  150. AWS Resources‏‎ (4,869 views)
  151. C++ Class: Pedigree Example‏‎ (4,855 views)
  152. Ben Lerch‏‎ (4,833 views)
  153. NHLBI Exome Sequencing Project‏‎ (4,822 views)
  154. 830 - Haplotyper::SampleHaplotypes()‏‎ (4,818 views)
  155. How to use aspera‏‎ (4,817 views)
  156. Biostatistics 666: Likelihood Calculations for Large Pedigrees‏‎ (4,717 views)
  157. Understanding QPLOT output‏‎ (4,691 views)
  158. 830 - Haplotyper::SampleOneHaplotype()‏‎ (4,594 views)
  159. GBR60vc.conf‏‎ (4,568 views)
  160. GotCloud: RedHat Package‏‎ (4,550 views)
  161. 830 - Haplotyper::ImputeGenotypes()‏‎ (4,493 views)
  162. Tutorial: EMMAX GotCloud STOM: Lecture 6‏‎ (4,462 views)
  163. TrioCaller:Archive‏‎ (4,336 views)
  164. 830 - BestAlignment::ClearPositions()‏‎ (4,321 views)
  165. RareMetals‏‎ (4,317 views)
  166. Vcf2geno‏‎ (4,220 views)
  167. Biostatistics 866: Core Competencies‏‎ (4,219 views)
  168. SAV Command Line Interface‏‎ (4,180 views)
  169. 830 - Haplotyper::ImputeGenotypes() (internal)‏‎ (4,062 views)
  170. 830 - Haplotyper::ScoreLeftConditional()‏‎ (4,052 views)
  171. 830 - MarkovModel::Condition()‏‎ (4,003 views)
  172. Savvy C++ Library‏‎ (3,994 views)
  173. 830 - Haplotyper::RandomSetup()‏‎ (3,922 views)
  174. 830 - Haplotyper::ScoreLeftConditional() (smart, complicated)‏‎ (3,895 views)
  175. SAM/BAM Convert Sequence‏‎ (3,895 views)
  176. Gzip File‏‎ (3,857 views)
  177. SeqShop: Friday - Practicing what we learned, June 2014‏‎ (3,852 views)
  178. 830 - BestAlignment::MaqAlignment()‏‎ (3,841 views)
  179. PileupBasedVariantCalling‏‎ (3,828 views)
  180. 830 - Haplotyper::SampleChromosomes()‏‎ (3,788 views)
  181. AWS Credentials‏‎ (3,717 views)
  182. Sara Rashkin‏‎ (3,717 views)
  183. 830 - Haplotyper::SummarizeOptions()‏‎ (3,661 views)
  184. FamRvTest tutorial‏‎ (3,643 views)
  185. 830 - Haplotyper::ConditionOnData()‏‎ (3,643 views)
  186. MaCH: Pedigree with Integer Allele Codes‏‎ (3,620 views)
  187. CHARGE‏‎ (3,537 views)
  188. 830 - Haplotyper::SetupPrior()‏‎ (3,513 views)
  189. 830 - Haplotyper::ImputeGenotypes() (edge)‏‎ (3,500 views)
  190. Ancestry‏‎ (3,491 views)
  191. Tramp‏‎ (3,435 views)
  192. 830 - MarkovModel::WalkLeft()‏‎ (3,404 views)
  193. Ann Arbor Travel Basics‏‎ (3,349 views)
  194. 830 - MaqIndex::CompareToIndex()‏‎ (3,345 views)
  195. 830 - MarkovModel::Transpose()‏‎ (3,340 views)
  196. Git Cheat Sheet‏‎ (3,329 views)
  197. BamPileup‏‎ (3,326 views)
  198. 830 - BestAlignment::EvaluateAlignment() (main loop)‏‎ (3,325 views)
  199. 830 - MaqIndex::LookupWord()‏‎ (3,275 views)
  200. Mantra.cpp‏‎ (3,200 views)
  201. 830 - BestAlignment::EvaluateAlignment() (detailed comparison)‏‎ (3,186 views)
  202. GotCloud: AMIs‏‎ (3,124 views)
  203. 830 - BasicMapper::main()‏‎ (3,117 views)
  204. 830 - BestAlignment::IterateCache()‏‎ (3,071 views)
  205. 830 - Haplotyper::Transpose()‏‎ (3,022 views)
  206. Makefile.tool‏‎ (2,983 views)
  207. RAREMETALWORKER X‏‎ (2,977 views)
  208. 830 - MarkovModel::CountRecombinants()‏‎ (2,938 views)
  209. 830 - MarkovModel::CountErrorsAndRecombinants()‏‎ (2,831 views)
  210. 830 - MaqIndex::BuildIndex()‏‎ (2,827 views)
  211. 830 - BestAlignment::isNewPosition()‏‎ (2,795 views)
  212. GotCloud: Configuration‏‎ (2,776 views)
  213. 830 - MarkovModel::WalkRight()‏‎ (2,773 views)
  214. CigarRoller Proposed Update‏‎ (2,753 views)
  215. 830 - MarkovModel::CountErrors()‏‎ (2,739 views)
  216. RareSimu‏‎ (2,733 views)
  217. 830 - MaqIndex::GetWord()‏‎ (2,687 views)
  218. StringMap.h‏‎ (2,670 views)
  219. 830 - MarkovModel::Impute()‏‎ (2,662 views)
  220. TOPMed Site Visit 2018‏‎ (2,644 views)
  221. Parameters.h‏‎ (2,482 views)
  222. Outcomes For Mapping A Paired End‏‎ (2,421 views)
  223. MERLIN format‏‎ (2,405 views)
  224. Editing Sequence Analysis Practice 2011/03/10‏‎ (2,250 views)
  225. HAPMIX‏‎ (2,201 views)
  226. Polymutt beta‏‎ (1,998 views)
  227. SavR‏‎ (1,963 views)
  228. Utility Library‏‎ (1,962 views)
  229. SAM: Filtering Reads‏‎ (1,909 views)
  230. IGFPipe‏‎ (1,898 views)
  231. Rare-metal-worker‏‎ (1,851 views)
  232. Imputation Server: Example‏‎ (1,833 views)
  233. C++ Class Averages‏‎ (1,817 views)
  234. MetaMinimac‏‎ (1,756 views)
  235. Dosage convertor‏‎ (1,630 views)

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