Pages with the most revisions

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  1. RAREMETAL Documentation‏‎ (444 revisions)
  2. RAREMETALWORKER‏‎ (429 revisions)
  3. Vt‏‎ (422 revisions)
  4. TrioCaller‏‎ (211 revisions)
  5. Minimac‏‎ (200 revisions)
  6. Variant Normalization‏‎ (192 revisions)
  7. Abecasis Lab‏‎ (192 revisions)
  8. Biostatistics 615/815 Fall 2011‏‎ (176 revisions)
  9. LocusZoom Standalone‏‎ (162 revisions)
  10. EPACTS for DIAGRAM‏‎ (158 revisions)
  11. RAREMETAL DOWNLOAD & BUILD‏‎ (152 revisions)
  12. RareMETALS‏‎ (147 revisions)
  13. Biostatistics 666: Main Page‏‎ (146 revisions)
  14. Tutorial: Low Pass Sequence Analysis‏‎ (145 revisions)
  15. RAREMETALWORKER METHOD‏‎ (142 revisions)
  16. Minimac3‏‎ (137 revisions)
  17. Tutorial: GotCloud‏‎ (125 revisions)
  18. Polymutt‏‎ (124 revisions)
  19. RAREMETAL METHOD‏‎ (123 revisions)
  20. Famrvtest‏‎ (122 revisions)
  21. Minimac: 1000 Genomes Imputation Cookbook‏‎ (118 revisions)
  22. EPACTS‏‎ (117 revisions)
  23. Main Page‏‎ (117 revisions)
  24. MaCH‏‎ (114 revisions)
  25. BamUtil‏‎ (111 revisions)
  26. SeqShop: Sequence Mapping and Assembly Practical, June 2014‏‎ (106 revisions)
  27. Relationship between Ploidy, Alleles and Genotypes‏‎ (103 revisions)
  28. Variant classification‏‎ (103 revisions)
  29. QPLOT‏‎ (102 revisions)
  30. GotCloud‏‎ (101 revisions)
  31. EMADS‏‎ (97 revisions)
  32. Tutorial: RAREMETAL‏‎ (95 revisions)
  33. EMADS Primary Analysis Plan‏‎ (92 revisions)
  34. GotCloud: Binary Releases‏‎ (82 revisions)
  35. VcfCodingSnps‏‎ (82 revisions)
  36. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014‏‎ (81 revisions)
  37. Software‏‎ (81 revisions)
  38. DosageConvertor‏‎ (80 revisions)
  39. VerifyBamID‏‎ (73 revisions)
  40. GotCloud: Variant Calling Pipeline‏‎ (72 revisions)
  41. GREGOR‏‎ (72 revisions)
  42. Biostatistics 602: Main Page‏‎ (71 revisions)
  43. LibStatGen: BAM‏‎ (70 revisions)
  44. SeqShop: Calling Your Own Genome, December 2014‏‎ (69 revisions)
  45. Triodenovo‏‎ (67 revisions)
  46. Exome Chip Design‏‎ (66 revisions)
  47. LocusZoom‏‎ (63 revisions)
  48. Biostatistics 615/815: Main Page‏‎ (63 revisions)
  49. Biostatistics 830: Main Page‏‎ (62 revisions)
  50. SeqShop: Estimates of Genetic Ancestry Practical, June 2014‏‎ (61 revisions)
  51. SeqShop: Analysis of Structural Variation Practical, June 2014‏‎ (61 revisions)
  52. SardiNIA‏‎ (60 revisions)
  53. METAL Documentation‏‎ (59 revisions)
  54. RAREMETAL‏‎ (57 revisions)
  55. LASER‏‎ (57 revisions)
  56. FastQValidator‏‎ (56 revisions)
  57. SeqShop: Calling Your Own Genome, May 2015‏‎ (56 revisions)
  58. RareMETALS2‏‎ (55 revisions)
  59. GotCloud: Genetic Reference and Resource Files‏‎ (55 revisions)
  60. Arf‏‎ (53 revisions)
  61. LibStatGen: FASTQ‏‎ (52 revisions)
  62. Creating an AMI on EC2‏‎ (51 revisions)
  63. C++ Library: libStatGen‏‎ (50 revisions)
  64. FTEC‏‎ (50 revisions)
  65. SeqShop: May 2015‏‎ (50 revisions)
  66. MaCH FAQ‏‎ (49 revisions)
  67. GotCloud: Alignment Pipeline‏‎ (49 revisions)
  68. Shuang Feng‏‎ (47 revisions)
  69. Minimac2‏‎ (47 revisions)
  70. Sequencing Workshop Analysis of Indels‏‎ (46 revisions)
  71. RAREMETAL Command Reference‏‎ (46 revisions)
  72. LibStatGen Download‏‎ (44 revisions)
  73. Test EPACTS for DIAGRAM‏‎ (43 revisions)
  74. Thunder‏‎ (43 revisions)
  75. RAREMETAL Change Log‏‎ (43 revisions)
  76. Karma-colorspace‏‎ (43 revisions)
  77. BamGenotypeCheck‏‎ (42 revisions)
  78. Minimac3 Usage‏‎ (42 revisions)
  79. StarCluster‏‎ (42 revisions)
  80. Minimac4‏‎ (41 revisions)
  81. C++ Class: SamFile‏‎ (40 revisions)
  82. Amazon Snapshot‏‎ (40 revisions)
  83. SeqShop: Ancestry On Your Own Genome, December 2014‏‎ (40 revisions)
  84. METAL Quick Start‏‎ (39 revisions)
  85. UMAKE‏‎ (39 revisions)
  86. GotCloud: Alignment Sub-Pipelines‏‎ (38 revisions)
  87. Sequence Analysis Practice 2011/03/09‏‎ (38 revisions)
  88. SeqShop: Analysis of Structural Variation Practical, December 2014‏‎ (37 revisions)
  89. Karma‏‎ (37 revisions)
  90. SeqShop: Sequence Mapping and Assembly Practical, December 2014‏‎ (36 revisions)
  91. Vmatch‏‎ (35 revisions)
  92. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014‏‎ (35 revisions)
  93. BamUtil: dedup‏‎ (34 revisions)
  94. Analyses of Indels‏‎ (34 revisions)
  95. RAREMETALWORKER command reference‏‎ (34 revisions)
  96. SeqShop: Estimates of Genetic Ancestry Practical, December 2014‏‎ (34 revisions)
  97. SeqShop: December 2014‏‎ (34 revisions)
  98. RAREMETALWORKER SPECIAL TOPICS‏‎ (33 revisions)
  99. Minimac3 Imputation Cookbook‏‎ (33 revisions)
  100. SAM Validation Criteria‏‎ (33 revisions)
  101. Make file tutorial‏‎ (33 revisions)
  102. SEQMIX‏‎ (33 revisions)
  103. Minimac3 Info File‏‎ (33 revisions)
  104. Biostatistics 866: Main Page‏‎ (33 revisions)
  105. SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014‏‎ (33 revisions)
  106. GTDT‏‎ (32 revisions)
  107. Releasing GotCloud‏‎ (32 revisions)
  108. RAREMETAL FAQ‏‎ (31 revisions)
  109. Abecasis Group Awards‏‎ (31 revisions)
  110. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014‏‎ (31 revisions)
  111. RAREFY COMMAND‏‎ (30 revisions)
  112. Biostatistics 830 - Code Snippets‏‎ (30 revisions)
  113. Polymutt2‏‎ (30 revisions)
  114. BamUtil: recab‏‎ (30 revisions)
  115. RAREFY DOCUMENTATION‏‎ (29 revisions)
  116. IMPUTE2: 1000 Genomes Imputation Cookbook‏‎ (29 revisions)
  117. CSG Tech Talks‏‎ (29 revisions)
  118. C++ Class: CigarRoller‏‎ (29 revisions)
  119. ExomePicks‏‎ (28 revisions)
  120. BamUtil: validate‏‎ (28 revisions)
  121. Raremetal Incoming updates‏‎ (28 revisions)
  122. SAM‏‎ (27 revisions)
  123. BamUtil: convert‏‎ (27 revisions)
  124. BAM Review Action Items‏‎ (27 revisions)
  125. Minimac3 ChangeLog‏‎ (27 revisions)
  126. SeqShop: Genetic Association Analysis Practical, June 2014‏‎ (26 revisions)
  127. BamUtil: bam2FastQ‏‎ (26 revisions)
  128. BamUtil: stats‏‎ (26 revisions)
  129. GotCloud: Amazon Demo‏‎ (26 revisions)
  130. M3vcftools Usage‏‎ (25 revisions)
  131. Using Git Example‏‎ (25 revisions)
  132. BamUtil: clipOverlap‏‎ (25 revisions)
  133. SeqShop: June 2014‏‎ (25 revisions)
  134. GotCloud: Versions‏‎ (24 revisions)
  135. EMMAX‏‎ (23 revisions)
  136. MutationFilter‏‎ (23 revisions)
  137. Bar Harbor Statistical Genetics Workshop‏‎ (22 revisions)
  138. Generic Exome Analysis Plan‏‎ (22 revisions)
  139. Minimac: Tutorial‏‎ (22 revisions)
  140. SeqShop: Genetic Association Analysis Practical, December 2014‏‎ (22 revisions)
  141. BamUtil: trimBam‏‎ (22 revisions)
  142. Introduction to new students‏‎ (21 revisions)
  143. SeqShop: Analysis of Structural Variation Practical, May 2015‏‎ (20 revisions)
  144. C++ Class: SamFileHeader‏‎ (20 revisions)
  145. Tutorial: GotCloud UW CMG‏‎ (20 revisions)
  146. C++ Library: general Change Log‏‎ (20 revisions)
  147. SeqShop: Ancestry On Your Own Genome, June 2014‏‎ (20 revisions)
  148. C++ Class: SamRecord‏‎ (20 revisions)
  149. Creating a Snapshot on EC2‏‎ (20 revisions)
  150. Amazon Storage‏‎ (20 revisions)
  151. VICES‏‎ (19 revisions)
  152. GotCloud: Source Releases‏‎ (19 revisions)
  153. Tutorial: Low Pass Sequence Analysis Answers‏‎ (19 revisions)
  154. GlfSingle‏‎ (19 revisions)
  155. VcfCooker‏‎ (19 revisions)
  156. Tutorial: EMMAX GotCloud STOM‏‎ (19 revisions)
  157. RvTests‏‎ (19 revisions)
  158. SeqShop: Aligning Your Own Genome, December 2014‏‎ (19 revisions)
  159. Tandem Repeat Concepts‏‎ (19 revisions)
  160. Bam read count‏‎ (18 revisions)
  161. SeqShop: Ancestry On Your Own Genome, May 2015‏‎ (18 revisions)
  162. GotCloud: FAQs‏‎ (18 revisions)
  163. RAREFY‏‎ (17 revisions)
  164. LibStatGen: general‏‎ (17 revisions)
  165. MEAGA‏‎ (17 revisions)
  166. Minimac Command Reference‏‎ (17 revisions)
  167. GotCloud: Variant Calling Options‏‎ (17 revisions)
  168. BamUtil: filter‏‎ (17 revisions)
  169. C++ Class: InputFile‏‎ (17 revisions)
  170. SeqShop: Sequence Mapping and Assembly Practical, May 2015‏‎ (17 revisions)
  171. LibStatGen Repository‏‎ (17 revisions)
  172. GlfTrio‏‎ (17 revisions)
  173. Evaluating a Read Mapper on Simulated Data‏‎ (17 revisions)
  174. Minimac3 Info (Older Version)‏‎ (17 revisions)
  175. FamLDCaller‏‎ (17 revisions)
  176. ChunkChromosome‏‎ (16 revisions)
  177. SeqShop: Aligning Your Own Genome, June 2014‏‎ (16 revisions)
  178. LibStatGen: ASP‏‎ (16 revisions)
  179. VcfRefGen‏‎ (16 revisions)
  180. Short Workshops‏‎ (15 revisions)
  181. LibStatGen: VCF‏‎ (15 revisions)
  182. C++ Library: FASTQ Change Log‏‎ (15 revisions)
  183. Sean Caron‏‎ (15 revisions)
  184. BamUtil: mergeBam‏‎ (15 revisions)
  185. GlfMultiples‏‎ (15 revisions)
  186. SeqShop: Calling Your Own Genome, June 2014‏‎ (15 revisions)
  187. METAL‏‎ (15 revisions)
  188. How To Use Git‏‎ (14 revisions)
  189. SardiNIA project meeting July 15-16, 2013‏‎ (14 revisions)
  190. CalcMatch‏‎ (13 revisions)
  191. MaCH: machX‏‎ (13 revisions)
  192. Minimac3 Cookbook : Chromosome X Imputation‏‎ (13 revisions)
  193. M3vcftools‏‎ (13 revisions)
  194. Genezoom‏‎ (13 revisions)
  195. Mach DAC‏‎ (13 revisions)
  196. SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015‏‎ (13 revisions)
  197. Git FAQs‏‎ (13 revisions)
  198. GotCloud: GenomeSTRiP Pipeline‏‎ (13 revisions)
  199. METAL Command Reference‏‎ (13 revisions)
  200. Base Caller Summaries‏‎ (12 revisions)
  201. BamUtil: writeRegion‏‎ (12 revisions)
  202. GLF‏‎ (12 revisions)
  203. GotCloud: Creating a New Pipeline‏‎ (12 revisions)
  204. Minimac3 Examples‏‎ (12 revisions)
  205. RAREFY DOWNLOAD‏‎ (12 revisions)
  206. RelativeFinder‏‎ (12 revisions)
  207. MaCH: Input Files‏‎ (12 revisions)
  208. SAM/BAM Classes FAQs‏‎ (12 revisions)
  209. LiftOver‏‎ (12 revisions)
  210. LibStatGen Troubleshooting‏‎ (11 revisions)
  211. RAREFY TUTORIAL‏‎ (11 revisions)
  212. Class Notes‏‎ (11 revisions)
  213. Tutorial: EMMAX GotCloud STOM: Lecture 8‏‎ (11 revisions)
  214. Verifying Sample Identities - Implementation‏‎ (11 revisions)
  215. SAV File Format‏‎ (11 revisions)
  216. BamUtil: diff‏‎ (11 revisions)
  217. SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015‏‎ (11 revisions)
  218. MaCH: 1000 Genomes Imputation Cookbook‏‎ (11 revisions)
  219. Haploxt‏‎ (10 revisions)
  220. Sam Library Usage Examples‏‎ (10 revisions)
  221. BamUtil: polishBam‏‎ (10 revisions)
  222. Biostatistics 666: Linkage Disequilibrium‏‎ (10 revisions)
  223. UMAKE-glfSingle‏‎ (10 revisions)
  224. LibStatGen: GLF‏‎ (10 revisions)
  225. Trial Enrichment‏‎ (10 revisions)
  226. Amazon Single Node‏‎ (10 revisions)
  227. 1000 Genomes Project Pilot 1 SNP Calling‏‎ (10 revisions)
  228. Minimac4 - Full List of Options‏‎ (10 revisions)
  229. C++ Class: FastQFile‏‎ (10 revisions)
  230. Summary Statistics Files Specification for RAREMETAL and rvtests‏‎ (9 revisions)
  231. Rare variant tests‏‎ (9 revisions)
  232. BAFRegress‏‎ (9 revisions)
  233. GotCloud: Amazon‏‎ (9 revisions)
  234. Dajiang Liu‏‎ (9 revisions)
  235. Goncalo Abecasis‏‎ (9 revisions)
  236. Regions of high linkage disequilibrium (LD)‏‎ (9 revisions)
  237. ContaminationDetection‏‎ (9 revisions)
  238. Using Gotcloud on Flux‏‎ (9 revisions)
  239. New Fugue‏‎ (9 revisions)
  240. FamRvTest command‏‎ (9 revisions)
  241. BamUtil: splitBam‏‎ (9 revisions)
  242. Biostatistics 666: Introductory Lecture‏‎ (8 revisions)
  243. Biostatistics 501: Main Page‏‎ (8 revisions)
  244. METAL FAQ‏‎ (8 revisions)
  245. Gzip‏‎ (8 revisions)
  246. Biostatistics 666: Modeling Recombination and Migration in the Coalescent‏‎ (8 revisions)
  247. Sayantan Das‏‎ (8 revisions)
  248. Idriver‏‎ (8 revisions)
  249. Examples of Read Mapping with Karma and BWA‏‎ (8 revisions)
  250. BaseQualityCheck‏‎ (8 revisions)

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