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- SeqShop: Analysis of Structural Variation Practical, June 2014 (61 revisions)
- SardiNIA (60 revisions)
- METAL Documentation (59 revisions)
- RAREMETAL (57 revisions)
- LASER (57 revisions)
- FastQValidator (56 revisions)
- SeqShop: Calling Your Own Genome, May 2015 (56 revisions)
- RareMETALS2 (55 revisions)
- GotCloud: Genetic Reference and Resource Files (55 revisions)
- Arf (53 revisions)
- LibStatGen: FASTQ (52 revisions)
- Creating an AMI on EC2 (51 revisions)
- C++ Library: libStatGen (50 revisions)
- FTEC (50 revisions)
- SeqShop: May 2015 (50 revisions)
- MaCH FAQ (49 revisions)
- GotCloud: Alignment Pipeline (49 revisions)
- Shuang Feng (47 revisions)
- Minimac2 (47 revisions)
- RAREMETAL Command Reference (46 revisions)
- Sequencing Workshop Analysis of Indels (46 revisions)
- LibStatGen Download (44 revisions)
- Test EPACTS for DIAGRAM (43 revisions)
- Thunder (43 revisions)
- RAREMETAL Change Log (43 revisions)
- Karma-colorspace (43 revisions)
- BamGenotypeCheck (42 revisions)
- Minimac3 Usage (42 revisions)
- StarCluster (42 revisions)
- Minimac4 (41 revisions)
- Amazon Snapshot (40 revisions)
- SeqShop: Ancestry On Your Own Genome, December 2014 (40 revisions)
- C++ Class: SamFile (40 revisions)
- METAL Quick Start (39 revisions)
- UMAKE (39 revisions)
- GotCloud: Alignment Sub-Pipelines (38 revisions)
- Sequence Analysis Practice 2011/03/09 (38 revisions)
- Karma (37 revisions)
- SeqShop: Analysis of Structural Variation Practical, December 2014 (37 revisions)
- SeqShop: Sequence Mapping and Assembly Practical, December 2014 (36 revisions)
- Vmatch (35 revisions)
- SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 (35 revisions)
- Analyses of Indels (34 revisions)
- RAREMETALWORKER command reference (34 revisions)
- SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (34 revisions)
- SeqShop: December 2014 (34 revisions)
- BamUtil: dedup (34 revisions)
- Minimac3 Imputation Cookbook (33 revisions)
- SAM Validation Criteria (33 revisions)
- Make file tutorial (33 revisions)
- SEQMIX (33 revisions)
- Minimac3 Info File (33 revisions)
- Biostatistics 866: Main Page (33 revisions)
- SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 (33 revisions)
- RAREMETALWORKER SPECIAL TOPICS (33 revisions)
- Releasing GotCloud (32 revisions)
- GTDT (32 revisions)
- SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 (31 revisions)
- RAREMETAL FAQ (31 revisions)
- Abecasis Group Awards (31 revisions)
- Polymutt2 (30 revisions)
- BamUtil: recab (30 revisions)
- RAREFY COMMAND (30 revisions)
- Biostatistics 830 - Code Snippets (30 revisions)
- RAREFY DOCUMENTATION (29 revisions)
- IMPUTE2: 1000 Genomes Imputation Cookbook (29 revisions)
- CSG Tech Talks (29 revisions)
- C++ Class: CigarRoller (29 revisions)
- ExomePicks (28 revisions)
- BamUtil: validate (28 revisions)
- Raremetal Incoming updates (28 revisions)
- BamUtil: convert (27 revisions)
- BAM Review Action Items (27 revisions)
- Minimac3 ChangeLog (27 revisions)
- SAM (27 revisions)
- BamUtil: stats (26 revisions)
- GotCloud: Amazon Demo (26 revisions)
- SeqShop: Genetic Association Analysis Practical, June 2014 (26 revisions)
- BamUtil: bam2FastQ (26 revisions)
- Using Git Example (25 revisions)
- BamUtil: clipOverlap (25 revisions)
- SeqShop: June 2014 (25 revisions)
- M3vcftools Usage (25 revisions)
- GotCloud: Versions (24 revisions)
- EMMAX (23 revisions)
- MutationFilter (23 revisions)
- Minimac: Tutorial (22 revisions)
- SeqShop: Genetic Association Analysis Practical, December 2014 (22 revisions)
- BamUtil: trimBam (22 revisions)
- Bar Harbor Statistical Genetics Workshop (22 revisions)
- Generic Exome Analysis Plan (22 revisions)
- Introduction to new students (21 revisions)
- SeqShop: Analysis of Structural Variation Practical, May 2015 (20 revisions)
- C++ Class: SamFileHeader (20 revisions)
- C++ Library: general Change Log (20 revisions)
- Tutorial: GotCloud UW CMG (20 revisions)
- SeqShop: Ancestry On Your Own Genome, June 2014 (20 revisions)
- C++ Class: SamRecord (20 revisions)
- Creating a Snapshot on EC2 (20 revisions)
- Amazon Storage (20 revisions)
- GotCloud: Source Releases (19 revisions)
- Tutorial: Low Pass Sequence Analysis Answers (19 revisions)
- GlfSingle (19 revisions)
- VcfCooker (19 revisions)
- Tutorial: EMMAX GotCloud STOM (19 revisions)
- RvTests (19 revisions)
- SeqShop: Aligning Your Own Genome, December 2014 (19 revisions)
- Tandem Repeat Concepts (19 revisions)
- VICES (19 revisions)
- Bam read count (18 revisions)
- SeqShop: Ancestry On Your Own Genome, May 2015 (18 revisions)
- GotCloud: FAQs (18 revisions)
- LibStatGen: general (17 revisions)
- MEAGA (17 revisions)
- GotCloud: Variant Calling Options (17 revisions)
- Minimac Command Reference (17 revisions)
- BamUtil: filter (17 revisions)
- C++ Class: InputFile (17 revisions)
- SeqShop: Sequence Mapping and Assembly Practical, May 2015 (17 revisions)
- LibStatGen Repository (17 revisions)
- GlfTrio (17 revisions)
- Evaluating a Read Mapper on Simulated Data (17 revisions)
- Minimac3 Info (Older Version) (17 revisions)
- FamLDCaller (17 revisions)
- RAREFY (17 revisions)
- ChunkChromosome (16 revisions)
- SeqShop: Aligning Your Own Genome, June 2014 (16 revisions)
- LibStatGen: ASP (16 revisions)
- VcfRefGen (16 revisions)
- LibStatGen: VCF (15 revisions)
- C++ Library: FASTQ Change Log (15 revisions)
- BamUtil: mergeBam (15 revisions)
- GlfMultiples (15 revisions)
- SeqShop: Calling Your Own Genome, June 2014 (15 revisions)
- METAL (15 revisions)
- Short Workshops (15 revisions)
- How To Use Git (14 revisions)
- SardiNIA project meeting July 15-16, 2013 (14 revisions)
- Minimac3 Cookbook : Chromosome X Imputation (13 revisions)
- M3vcftools (13 revisions)
- Genezoom (13 revisions)
- Mach DAC (13 revisions)
- SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 (13 revisions)
- Git FAQs (13 revisions)
- GotCloud: GenomeSTRiP Pipeline (13 revisions)
- METAL Command Reference (13 revisions)
- CalcMatch (13 revisions)
- MaCH: machX (13 revisions)
- BamUtil: writeRegion (12 revisions)
- GLF (12 revisions)
- GotCloud: Creating a New Pipeline (12 revisions)
- Minimac3 Examples (12 revisions)
- RAREFY DOWNLOAD (12 revisions)
- RelativeFinder (12 revisions)
- MaCH: Input Files (12 revisions)
- SAM/BAM Classes FAQs (12 revisions)
- LiftOver (12 revisions)
- Base Caller Summaries (12 revisions)
- LibStatGen Troubleshooting (11 revisions)
- RAREFY TUTORIAL (11 revisions)
- Sean Caron (11 revisions)
- Class Notes (11 revisions)
- Tutorial: EMMAX GotCloud STOM: Lecture 8 (11 revisions)
- Verifying Sample Identities - Implementation (11 revisions)
- SAV File Format (11 revisions)
- BamUtil: diff (11 revisions)
- MaCH: 1000 Genomes Imputation Cookbook (11 revisions)
- SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 (11 revisions)
- Sam Library Usage Examples (10 revisions)
- BamUtil: polishBam (10 revisions)
- Biostatistics 666: Linkage Disequilibrium (10 revisions)
- UMAKE-glfSingle (10 revisions)
- LibStatGen: GLF (10 revisions)
- Trial Enrichment (10 revisions)
- Amazon Single Node (10 revisions)
- 1000 Genomes Project Pilot 1 SNP Calling (10 revisions)
- Minimac4 - Full List of Options (10 revisions)
- C++ Class: FastQFile (10 revisions)
- Haploxt (10 revisions)
- Rare variant tests (9 revisions)
- BAFRegress (9 revisions)
- GotCloud: Amazon (9 revisions)
- Dajiang Liu (9 revisions)
- Goncalo Abecasis (9 revisions)
- Regions of high linkage disequilibrium (LD) (9 revisions)
- ContaminationDetection (9 revisions)
- Using Gotcloud on Flux (9 revisions)
- New Fugue (9 revisions)
- FamRvTest command (9 revisions)
- BamUtil: splitBam (9 revisions)
- Summary Statistics Files Specification for RAREMETAL and rvtests (9 revisions)
- Biostatistics 501: Main Page (8 revisions)
- METAL FAQ (8 revisions)
- Gzip (8 revisions)
- Biostatistics 666: Modeling Recombination and Migration in the Coalescent (8 revisions)
- Sayantan Das (8 revisions)
- Idriver (8 revisions)
- Examples of Read Mapping with Karma and BWA (8 revisions)
- BaseQualityCheck (8 revisions)
- Minimac3 Cookbook : Converting Files to VCF (8 revisions)
- Debuggers (8 revisions)
- Bayesdenovo (8 revisions)
- Biostatistics 666: Introductory Lecture (8 revisions)
- Biostatistics 666: Hardy-Weinberg Equilibrium (7 revisions)
- Better X Sessions from Home (NX) (7 revisions)
- GotCloud: Configuration (7 revisions)
- SeqShop: Aligning Your Own Genome, May 2015 (7 revisions)
- RAREMETALWORKER X (7 revisions)
- Jennifer Bragg-Gresham (7 revisions)
- Mount S3 Volume (7 revisions)
- SplitPed (7 revisions)
- SeqShop: Association Analysis, May 2015 (7 revisions)
- BamUtil: dumpAsp (7 revisions)
- SAM/BAM Convert Sequence (7 revisions)
- Minimac4 Documentation (7 revisions)
- SeqShop: Friday - Practicing what we learned, June 2014 (7 revisions)
- PileupBasedVariantCalling (7 revisions)
- Understanding vcf-summary output (6 revisions)
- Computer How-Tos (6 revisions)
- FastQ Validation Criteria (6 revisions)
- Genotype Likelihood Based Allele Balance (6 revisions)
- Biostatistics 666: Advanced Coalescent, Changing Population Size (6 revisions)
- BAM (6 revisions)
- Git Cheat Sheet (6 revisions)
- Biostatistics 666: Maximum Likelihood Allele Frequency Estimation (6 revisions)
- Minimac3 - Full List of Options (6 revisions)
- GotCloud: RedHat Package (6 revisions)
- GotCloud: Filters (6 revisions)
- Scott Vrieze (6 revisions)
- BamUtil: squeeze (6 revisions)
- SeqShop: Estimates of Genetic Ancestry Practical, May 2015 (6 revisions)
- Garlic (6 revisions)
- Tutorial: EMMAX GotCloud STOM: Lecture 5 (6 revisions)
- SNP Call Set Properties (6 revisions)
- Minimac3 Cookbook : Pre-Phasing (6 revisions)
- Genotype Likelihood based Allele Frequency (6 revisions)
- An example of using libcsg (6 revisions)
- Code Sample: Generating QQ Plots in R (6 revisions)
- BamUtil: indelDiscordance (6 revisions)
- StatgenTools (5 revisions)
- Vpeep (5 revisions)
- BamUtil: FAQ (5 revisions)
- Read Mapping (5 revisions)
- Biostatistics 666: Haplotype Association Tests (5 revisions)
- Mapping Quality Scores (5 revisions)
- Rvtests (5 revisions)
- Mach2dat: Association with MACH output (5 revisions)
- PedScript (5 revisions)
- BamUtil: gapInfo (5 revisions)
- Installing MinGW & MSYS on Windows (5 revisions)
