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- TrioCaller (74,259 views)
- C++ Library: libStatGen (72,439 views)
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- Thunder (57,182 views)
- SeqShop: Calling Your Own Genome, May 2015 (56,605 views)
- GotCloud: Variant Calling Pipeline (56,543 views)
- EPACTS for DIAGRAM (56,125 views)
- SEQMIX (55,102 views)
- RAREMETALWORKER METHOD (54,485 views)
- LibStatGen: BAM (53,848 views)
- GotCloud: Binary Releases (53,292 views)
- BamUtil: trimBam (52,864 views)
- BamUtil: stats (52,859 views)
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- Biostatistics 615/815 Fall 2011 (50,011 views)
- Tutorial: RAREMETAL (49,133 views)
- SeqShop: Analysis of Structural Variation Practical, June 2014 (48,689 views)
- LibStatGen: FASTQ (48,052 views)
- RvTests (47,440 views)
- LibStatGen Download (46,427 views)
- Generic Exome Analysis Plan (46,320 views)
- SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 (45,046 views)
- RAREMETAL METHOD (44,789 views)
- FTEC (44,402 views)
- GlfMultiples (44,260 views)
- GotCloud: Alignment Pipeline (44,242 views)
- SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 (42,725 views)
- BamUtil: clipOverlap (42,416 views)
- Short Workshops (42,274 views)
- SeqShop: Analysis of Structural Variation Practical, December 2014 (41,384 views)
- VcfCooker (39,794 views)
- Minimac3 Usage (39,324 views)
- Creating an AMI on EC2 (37,833 views)
- RareMETALS2 (37,508 views)
- Relationship between Ploidy, Alleles and Genotypes (37,073 views)
- GotCloud: Genetic Reference and Resource Files (36,647 views)
- Bam read count (36,566 views)
- Rare variant tests (36,095 views)
- Arf (35,886 views)
- ExomePicks (35,873 views)
- SeqShop: Sequence Mapping and Assembly Practical, June 2014 (35,860 views)
- SeqShop: Estimates of Genetic Ancestry Practical, December 2014 (35,845 views)
- SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 (35,442 views)
- BamUtil: writeRegion (35,174 views)
- RAREMETALWORKER command reference (34,852 views)
- SeqShop: Sequence Mapping and Assembly Practical, December 2014 (34,687 views)
- BamUtil: convert (34,504 views)
- Karma (34,230 views)
- SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 (34,081 views)
- GlfSingle (33,735 views)
- MEAGA (33,569 views)
- BamUtil: diff (33,347 views)
- BamUtil: filter (32,596 views)
- SeqShop: May 2015 (32,565 views)
- GTDT (32,118 views)
- METAL Command Reference (32,061 views)
- SeqShop: Sequence Mapping and Assembly Practical, May 2015 (31,820 views)
- SeqShop: Estimates of Genetic Ancestry Practical, June 2014 (31,390 views)
- StarCluster (31,335 views)
- GotCloud: Alignment Sub-Pipelines (30,467 views)
- BamUtil: recab (30,396 views)
- Shuang Feng (29,929 views)
- MaCH: 1000 Genomes Imputation Cookbook (29,678 views)
- BamGenotypeCheck (29,455 views)
- RAREFY COMMAND (28,827 views)
- BAFRegress (28,566 views)
- ChunkChromosome (28,334 views)
- Amazon Snapshot (28,131 views)
- GLF (27,303 views)
- Polymutt2 (27,259 views)
- Abecasis Group Awards (27,085 views)
- RAREFY (26,866 views)
- Minimac: Tutorial (26,513 views)
- SeqShop: Analysis of Structural Variation Practical, May 2015 (26,402 views)
- Releasing GotCloud (26,387 views)
- GotCloud: Versions (26,072 views)
- SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 (25,903 views)
- Rare Variant Analysis and Meta-Analysis (25,310 views)
- SeqShop: December 2014 (25,161 views)
- SeqShop: Ancestry On Your Own Genome, December 2014 (25,066 views)
- Bar Harbor Statistical Genetics Workshop (24,989 views)
- Evaluating a Read Mapper on Simulated Data (24,788 views)
- C++ Class: SamFile (24,745 views)
- Class Notes (24,586 views)
- SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 (24,223 views)
- CSG Tech Talks (24,132 views)
- BamUtil: mergeBam (24,102 views)
- How To Use Git (23,869 views)
- BamUtil: polishBam (23,450 views)
- SeqShop: Genetic Association Analysis Practical, December 2014 (23,282 views)
- SAM Validation Criteria (23,269 views)
- Regions of high linkage disequilibrium (LD) (23,251 views)
- Using Git Example (22,647 views)
- Vmatch (22,618 views)
- RAREMETAL FAQ (22,457 views)
- GotCloud: FAQs (21,933 views)
- RAREMETAL Change Log (21,838 views)
- RAREFY DOCUMENTATION (21,815 views)
- Base Caller Summaries (21,672 views)
- Karma-colorspace (21,315 views)
- Creating a Snapshot on EC2 (21,238 views)
- Minimac3 Cookbook : Converting Files to VCF (21,109 views)
- Power Calculations: Quantitative Traits (20,895 views)
- BamUtil: splitBam (20,565 views)
- Tutorial: GotCloud UW CMG (20,506 views)
- Biostatistics 830 - Code Snippets (20,327 views)
- BAM Review Action Items (20,253 views)
- Minimac Command Reference (20,088 views)
- SeqShop: Aligning Your Own Genome, December 2014 (20,043 views)
- Verifying Sample Identities - Implementation (19,631 views)
- GotCloud: GenomeSTRiP Pipeline (19,418 views)
- Minimac3 ChangeLog (19,280 views)
- Minimac4 Documentation (19,244 views)
- Make file tutorial (19,227 views)
- SeqShop: Ancestry On Your Own Genome, May 2015 (19,187 views)
- SeqShop: June 2014 (19,044 views)
- Git FAQs (19,030 views)
- New Fugue (19,008 views)
- METAL FAQ (18,872 views)
- RAREMETAL Command Reference (18,685 views)
- Genezoom (18,681 views)
- Indel (18,516 views)
- Minimac3 Cookbook : Chromosome X Imputation (18,087 views)
- GotCloud: Creating a New Pipeline (17,999 views)
- Introduction to new students (17,929 views)
- Sequence Analysis Practice 2011/03/09 (17,908 views)
- LibStatGen: VCF (17,566 views)
- Goncalo Abecasis (17,525 views)
- Amazon Storage (17,420 views)
- Mach2dat: Association with MACH output (17,417 views)
- Minimac3 Examples (17,412 views)
- SeqShop: Genetic Association Analysis Practical, June 2014 (17,385 views)
- Biostatistics 666: Rare Variant Burden Tests (17,180 views)
- GlfTrio (17,115 views)
- Tutorial: EMMAX GotCloud STOM (17,082 views)
- VerifyIDintensity (16,971 views)
- GotCloud: Amazon Demo (16,909 views)
- Summary Statistics Files Specification for RAREMETAL and rvtests (16,780 views)
- Debuggers (16,474 views)
- Basic Linux Intro (16,324 views)
- VICES (16,161 views)
- LibStatGen Troubleshooting (16,151 views)
- NHLBI Informatics Resource (15,963 views)
- Sean Caron (15,788 views)
- MaCH: Input Files (15,653 views)
- Understanding vcf-summary output (15,406 views)
- C++ Class: CigarRoller (15,329 views)
- LibStatGen: ASP (15,143 views)
- Examples of Read Mapping with Karma and BWA (15,057 views)
- M3VCF Files (15,004 views)
- TabAnno (14,904 views)
- MaCH: machX (14,875 views)
- CalcMatch (14,660 views)
- RAREFY DOWNLOAD (14,608 views)
- SplitPed (14,550 views)
- RelativeFinder (14,430 views)
- RAREMETALWORKER SPECIAL TOPICS (14,406 views)
- Dajiang Liu (14,315 views)
- BamUtil: splitChromosome (14,057 views)
- Computer How-Tos (14,005 views)
- Mach DAC (13,962 views)
- GotCloud: Source Releases (13,958 views)
- 1000 Genomes Project Pilot 1 SNP Calling (13,936 views)
- Understanding VerifyBamID output (13,858 views)
- BamUtil: squeeze (13,817 views)
- LibStatGen: general (13,787 views)
- Haploxt (13,643 views)
- Tutorial: Low Pass Sequence Analysis Answers (13,457 views)
- RAREFY TUTORIAL (13,414 views)
- ContaminationDetection (13,299 views)
- Stouffer Method for Meta-Analysis (13,286 views)
- GotCloud: Variant Calling Options (13,241 views)
- C++ Class: SamFileHeader (13,082 views)
- Samtools-hybrid (13,053 views)
- Phred scale (13,034 views)
- LiftMap.py (12,973 views)
- CheckVCF.py (12,932 views)
- Pileup (12,763 views)
- Biostatistics 666: Linkage Disequilibrium (12,762 views)
- BamUtil: revert (12,573 views)
- Genotype Likelihood based Allele Frequency (12,496 views)
- Test EPACTS for DIAGRAM (12,416 views)
- MutationFilter (12,415 views)
- Minimac3 - Full List of Options (12,377 views)
- Raremetal Incoming updates (12,306 views)
- FastQ Validation Criteria (12,304 views)
- Analyses of Indels (12,071 views)
- Minimac3 Cookbook : Pre-Phasing (12,036 views)
- Genotype Likelihood Based Allele Balance (12,010 views)
- Better X Sessions from Home (NX) (11,923 views)
- Goncalo Abecasis: Interview with Christiana Fogg (11,831 views)
- SeqShop: Association Analysis, May 2015 (11,782 views)
- BamUtil: asp (11,749 views)
- Minimac Diagnostics (11,740 views)
- BamUtil: dumpAsp (11,731 views)
- C++ Class: FastQFile (11,694 views)
- M3vcftools Usage (11,675 views)
- Ligate Minimac (11,659 views)
- LiftRsNumber.py (11,615 views)
- LibStatGen Repository (11,612 views)
- BamUtil: gapInfo (11,580 views)
- PedScript (11,542 views)
- Biostatistics 666: Hardy-Weinberg Equilibrium (11,405 views)
- SAV File Format (11,070 views)
- Sam Library Usage Examples (11,019 views)
- METAL Glucose Example Script (10,884 views)
- FamRvTest command (10,853 views)
- BamUtil: findCigars (10,808 views)
- Merlin (10,709 views)
- Biostatistics 666: Modeling Recombination and Migration in the Coalescent (10,594 views)
- FASTA (10,496 views)
- BamUtil: FAQ (10,413 views)
- Minimac3 Info (Older Version) (10,329 views)
- Biostatistics 666: Introductory Lecture (10,298 views)
- Amazon Single Node (10,283 views)
- Biostatistics 666: Whole Genome Sequencing (10,210 views)
- C++ Class: InputFile (10,192 views)
- Biostatistics 666: Haplotype Estimation (10,187 views)
- Sequencing Workshop Analysis of Indels (10,133 views)
- GotCloud: Amazon (10,123 views)
- Idriver (10,039 views)
- C++ Library: general Change Log (10,013 views)
- Sayantan Das (9,999 views)
- Mount S3 Volume (9,947 views)
- Biostatistics 666: Linkage Analysis in Sibling Pairs (9,715 views)
- Biostatistics 666: Maximum Likelihood Allele Frequency Estimation (9,706 views)
- Biostatistics 615/815 Winter 2011 (9,703 views)
- Fst (9,697 views)
- BamUtil: dumpHeader (9,635 views)
- C++ Class: SamRecord (9,584 views)
- Alan Kwong (9,571 views)
- Scott Vrieze (9,546 views)
- VcfRefGen (9,484 views)
- Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium (9,469 views)
- Bayesdenovo (9,407 views)
- M3vcftools (9,346 views)
- PhoneHome (9,253 views)
