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- (hist) 830 - Haplotyper::ImputeGenotypes() [722 bytes]
- (hist) BAM [731 bytes]
- (hist) Biostatistics 666: Maximum Likelihood Allele Frequency Estimation [757 bytes]
- (hist) Biostatistics 666: Haplotype Estimation [782 bytes]
- (hist) 830 - Haplotyper::SampleHaplotypes() [788 bytes]
- (hist) Fst [799 bytes]
- (hist) METAL SOURCE [820 bytes]
- (hist) METAL CUSTOMVARIABLE [834 bytes]
- (hist) Hardy Weinberg equilibrium [841 bytes]
- (hist) FASTA [843 bytes]
- (hist) 830 - Haplotyper::ImputeGenotypes() (internal) [860 bytes]
- (hist) Short Workshops [878 bytes]
- (hist) RAREFY [882 bytes]
- (hist) Biostatistics 666: Hardy-Weinberg Equilibrium [885 bytes]
- (hist) Biostatistics 666: Modeling Recombination and Migration in the Coalescent [889 bytes]
- (hist) Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium [901 bytes]
- (hist) Zlib [905 bytes]
- (hist) Example [905 bytes]
- (hist) GotCloud: Amazon [916 bytes]
- (hist) NHLBI Exome Sequencing Project [918 bytes]
- (hist) How to use aspera [953 bytes]
- (hist) Links to Sequence Analysis Tools [964 bytes]
- (hist) 830 - Haplotyper::ScoreLeftConditional() (smart, complicated) [966 bytes]
- (hist) 830 - MarkovModel::WalkRight() [974 bytes]
- (hist) Biostatistics 666: Contemporary Human Genetics [988 bytes]
- (hist) Raremetal Incoming updates [1,004 bytes]
- (hist) Parameters.h [1,078 bytes]
- (hist) 830 - MaqIndex::LookupWord() [1,085 bytes]
- (hist) VcfGenomeStat [1,093 bytes]
- (hist) StatgenTools [1,109 bytes]
- (hist) Biostatistics 666: Haplotype Association Tests [1,119 bytes]
- (hist) Mach2dat: Association with MACH output [1,151 bytes]
- (hist) 830 - Haplotyper::SummarizeOptions() [1,151 bytes]
- (hist) MaCH [1,154 bytes]
- (hist) BamUtil: dumpHeader [1,167 bytes]
- (hist) Goncalo Abecasis [1,193 bytes]
- (hist) Screen Commands [1,225 bytes]
- (hist) Gene Ontology [1,226 bytes]
- (hist) Outcomes For Mapping A Paired End [1,228 bytes]
- (hist) Biostatistics 666: Association Tests in Structured Populations [1,232 bytes]
- (hist) 830 - BestAlignment::MaqAlignment() [1,256 bytes]
- (hist) 830 - MarkovModel::CountErrorsAndRecombinants() [1,257 bytes]
- (hist) RAREMETAL DOWNLOAD & BUILD [1,267 bytes]
- (hist) Stouffer Method for Meta-Analysis [1,268 bytes]
- (hist) BamUtil: readIndexedBam [1,288 bytes]
- (hist) METAL FAQ [1,309 bytes]
- (hist) 830 - MarkovModel::Impute() [1,345 bytes]
- (hist) BamUtil: dumpIndex [1,366 bytes]
- (hist) 830 - Haplotyper::SampleChromosomes() [1,380 bytes]
- (hist) Tutorial: EMMAX GotCloud STOM [1,388 bytes]
- (hist) Minimac3 Cookbook : Converting Files to VCF [1,399 bytes]
- (hist) LibStatGen: GLF [1,512 bytes]
- (hist) Makefile.tool [1,517 bytes]
- (hist) Ligate Minimac [1,520 bytes]
- (hist) METAL [1,522 bytes]
- (hist) Evaluating a Read Mapper on Simulated Data [1,532 bytes]
- (hist) METAL GENOMICCONTROL [1,553 bytes]
- (hist) AWS Credentials [1,556 bytes]
- (hist) RAREMETAL [1,609 bytes]
- (hist) BamUtil: explainFlags [1,614 bytes]
- (hist) BamUtil: readReference [1,686 bytes]
- (hist) LibStatGen: general [1,687 bytes]
- (hist) Mapping Quality Scores [1,705 bytes]
- (hist) Biostatistics 666: Linkage Disequilibrium [1,710 bytes]
- (hist) Class Notes [1,724 bytes]
- (hist) 830 - Haplotyper::RandomSetup() [1,765 bytes]
- (hist) Configure GotCloud [1,771 bytes]
- (hist) SAV Command Line Interface [1,778 bytes]
- (hist) SAV File Format [1,786 bytes]
- (hist) SAM/BAM Classes FAQs [1,811 bytes]
- (hist) LiftRsNumber.py [1,812 bytes]
- (hist) METAL Glucose Example Script [1,825 bytes]
- (hist) C++ Class: SamRecord [1,839 bytes]
- (hist) C++ Class: Pedigree Example [1,853 bytes]
- (hist) BamUtil: splitBam [1,891 bytes]
- (hist) MaCH: machX [1,917 bytes]
- (hist) Tramp [1,922 bytes]
- (hist) 830 - Haplotyper::Transpose() [1,947 bytes]
- (hist) Genotype Likelihood based Hardy-Weinberg Test [1,957 bytes]
- (hist) How To Use Git [1,974 bytes]
- (hist) Samtools-hybrid [1,999 bytes]
- (hist) C++ Class: SamFileHeader [2,009 bytes]
- (hist) Mach DAC [2,010 bytes]
- (hist) Trial Enrichment [2,027 bytes]
- (hist) CSG Tech Talks [2,042 bytes]
- (hist) SeqShop: June 2014 [2,051 bytes]
- (hist) Biostatistics 666: Introduction to the Coalescent [2,060 bytes]
- (hist) Tutorial: EMMAX GotCloud STOM: Lecture 5 [2,070 bytes]
- (hist) C++ Class Averages [2,075 bytes]
- (hist) PhoneHome [2,095 bytes]
- (hist) Introduction to new students [2,134 bytes]
- (hist) Biostatistics 830 - Code Snippets [2,161 bytes]
- (hist) VerifyIDintensity [2,169 bytes]
- (hist) BamUtil: splitChromosome [2,173 bytes]
- (hist) RAREFY TUTORIAL [2,211 bytes]
- (hist) Shuang Feng [2,225 bytes]
- (hist) BamUtil: dumpRefInfo [2,261 bytes]
- (hist) BaseQualityCheck [2,266 bytes]
- (hist) BamUtil: findCigars [2,279 bytes]
- (hist) 830 - BasicMapper::main() [2,285 bytes]
- (hist) Genotype Likelihood based Inbreeding Coefficient [2,305 bytes]
- (hist) NHLBI Informatics Resource [2,314 bytes]
- (hist) LibStatGen: FASTQ [2,324 bytes]
- (hist) RareSimu [2,334 bytes]
- (hist) SEQMIX [2,349 bytes]
- (hist) VcfRefGen [2,396 bytes]
- (hist) Biostatistics 666: Core Competencies [2,396 bytes]
- (hist) Biostatistics 830: Core Competencies [2,396 bytes]
- (hist) Biostatistics 866: Core Competencies [2,396 bytes]
- (hist) Releasing GotCloud [2,443 bytes]
- (hist) Vpeep [2,451 bytes]
- (hist) Minimac Diagnostics [2,465 bytes]
- (hist) PedScript [2,477 bytes]
- (hist) RAREMETALWORKER X [2,532 bytes]
- (hist) Tutorial: EMMAX GotCloud STOM: Lecture 8 [2,543 bytes]
- (hist) C++ Class: InputFile [2,553 bytes]
- (hist) FTEC [2,563 bytes]
- (hist) Mantra.cpp [2,570 bytes]
- (hist) BAM to FASTQ [2,638 bytes]
- (hist) ContaminationDetection [2,664 bytes]
- (hist) Editing Sequence Analysis Practice 2011/03/10 [2,681 bytes]
- (hist) METAL Command Reference [2,690 bytes]
- (hist) FamRvTest command [2,692 bytes]
- (hist) Power Calculations: Quantitative Traits [2,699 bytes]
- (hist) Biostatistics 666: Introductory Lecture [2,702 bytes]
- (hist) Vcf2geno [2,723 bytes]
- (hist) SplitRef [2,732 bytes]
- (hist) C++ Library: FASTQ Change Log [2,744 bytes]
- (hist) Understanding QPLOT output [2,779 bytes]
- (hist) Basic Linux Intro [2,788 bytes]
- (hist) Git Cheat Sheet [2,799 bytes]
- (hist) Main Page [2,838 bytes]
- (hist) GotCloud: Reference Files [2,853 bytes]
- (hist) Abecasis Group Awards [2,862 bytes]
- (hist) RAREMETAL Command Reference [2,876 bytes]
- (hist) SeqShop: Ancestry On Your Own Genome, June 2014 [2,879 bytes]
- (hist) New Fugue [2,898 bytes]
- (hist) Genotype Likelihood based Allele Frequency [2,912 bytes]
- (hist) Creating a Snapshot on EC2 [2,944 bytes]
- (hist) RAREMETALWORKER SPECIAL TOPICS [2,950 bytes]
- (hist) TinySimulator [2,957 bytes]
- (hist) LibStatGen Troubleshooting [2,966 bytes]
- (hist) Pileup [2,975 bytes]
- (hist) GlfSingle [3,005 bytes]
- (hist) GotCloud: Configuration [3,096 bytes]
- (hist) UMAKE-glfSingle [3,105 bytes]
- (hist) ChunkChromosome [3,106 bytes]
- (hist) Mount S3 Volume [3,106 bytes]
- (hist) Tutorial: EMMAX GotCloud STOM: Lecture 6 [3,130 bytes]
- (hist) BamUtil: revert [3,158 bytes]
- (hist) SeqShop: May 2015 [3,209 bytes]
- (hist) MappabilityScores [3,236 bytes]
- (hist) SNP Call Set Properties [3,258 bytes]
- (hist) FamLDCaller [3,270 bytes]
- (hist) SeqShop: December 2014 [3,406 bytes]
- (hist) RAREFY COMMAND [3,494 bytes]
- (hist) Software [3,495 bytes]
- (hist) Biostatistics 501: Main Page [3,495 bytes]
- (hist) BamGenotypeCheck [3,529 bytes]
- (hist) RAREFY DOCUMENTATION [3,545 bytes]
- (hist) FastQ Validation Criteria [3,548 bytes]
- (hist) M3vcftools [3,571 bytes]
- (hist) BamUtil: mergeBam [3,601 bytes]
- (hist) SplitPed [3,614 bytes]
- (hist) GotCloud: RedHat Package [3,633 bytes]
- (hist) SAM: Filtering Reads [3,662 bytes]
- (hist) GlfMultiples [3,724 bytes]
- (hist) GlfTrio [3,739 bytes]
- (hist) Minimac3 Cookbook : Pre-Phasing [3,739 bytes]
- (hist) Debuggers [3,820 bytes]
- (hist) C++ Class: FastQFile [3,837 bytes]
- (hist) Haploxt [3,849 bytes]
- (hist) LibStatGen: BAM [3,857 bytes]
- (hist) Tutorial: EMMAX GotCloud STOM: Lecture 2 [3,906 bytes]
- (hist) BamUtil: FAQ [3,933 bytes]
- (hist) Ancestry [3,974 bytes]
- (hist) Minimac Command Reference [4,022 bytes]
- (hist) GBR60vc.conf [4,052 bytes]
- (hist) Thunder [4,073 bytes]
- (hist) Amazon Snapshot [4,077 bytes]
- (hist) Amazon Single Node [4,078 bytes]
- (hist) Bam read count [4,083 bytes]
- (hist) Regions of high linkage disequilibrium (LD) [4,095 bytes]
- (hist) CheckVCF.py [4,096 bytes]
- (hist) LiftMap.py [4,134 bytes]
- (hist) BamUtil: asp [4,184 bytes]
- (hist) Biostatistics 815 Term Project [4,204 bytes]
- (hist) C++ Class: SamFile [4,217 bytes]
- (hist) BamUtil: indelDiscordance [4,231 bytes]
- (hist) Polymutt2 [4,231 bytes]
- (hist) GotCloud: Source Releases [4,253 bytes]
- (hist) Better X Sessions from Home (NX) [4,258 bytes]
- (hist) Arf [4,318 bytes]
- (hist) SardiNIA project meeting July 15-16, 2013 [4,443 bytes]
- (hist) RvTests [4,498 bytes]
- (hist) Verifying Sample Identities - Implementation [4,546 bytes]
- (hist) GotCloud: Filters [4,563 bytes]
- (hist) StatsTools [4,596 bytes]
- (hist) SeqShop: Calling Your Own Genome, June 2014 [4,618 bytes]
- (hist) Garlic [4,629 bytes]
- (hist) Meta Analysis of SNPxEnvironment Interaction [4,679 bytes]
- (hist) SeqShop: Ancestry On Your Own Genome, May 2015 [4,819 bytes]
- (hist) An example of using libcsg [4,824 bytes]
- (hist) CalcMatch [4,883 bytes]
- (hist) CigarRoller Proposed Update [4,960 bytes]
- (hist) Vmatch [4,975 bytes]
- (hist) Understanding vcf-summary output [5,050 bytes]
- (hist) Minimac3 Cookbook : Chromosome X Imputation [5,141 bytes]
- (hist) BamUtil: gapInfo [5,230 bytes]
- (hist) BamUtil: convert [5,265 bytes]
- (hist) Minimac3 Examples [5,298 bytes]
- (hist) C++ Library: general Change Log [5,357 bytes]
- (hist) SeqShop: Ancestry On Your Own Genome, December 2014 [5,460 bytes]
- (hist) BamUtil: dumpAsp [5,510 bytes]
- (hist) C++ Class: CigarRoller [5,541 bytes]
- (hist) Using Gotcloud on Flux [5,632 bytes]
- (hist) MaCH: 1000 Genomes Imputation Cookbook [5,646 bytes]
- (hist) GotCloud: Amazon Demo [5,646 bytes]
- (hist) Sequence Analysis Practice 2011/03/09 [5,675 bytes]
- (hist) M3VCF Files [5,766 bytes]
- (hist) VICES [5,784 bytes]
- (hist) BamUtil: writeRegion [5,807 bytes]
- (hist) Tutorial: Low Pass Sequence Analysis Answers [5,822 bytes]
- (hist) Minimac3 Imputation Cookbook [5,905 bytes]
- (hist) SeqShop: Aligning Your Own Genome, May 2015 [5,922 bytes]
- (hist) RAREMETALWORKER METHOD [5,949 bytes]
- (hist) Installing MinGW & MSYS on Windows [6,107 bytes]
- (hist) Minimac3 - Full List of Options [6,159 bytes]
- (hist) RelativeFinder [6,175 bytes]
- (hist) SeqShop: Aligning Your Own Genome, December 2014 [6,175 bytes]
- (hist) BamUtil: squeeze [6,177 bytes]
- (hist) RAREMETAL METHOD [6,333 bytes]
- (hist) Minimac3 Info (Older Version) [6,431 bytes]
- (hist) Bayesdenovo [6,453 bytes]
- (hist) Amazon Storage [6,462 bytes]
- (hist) M3vcftools Usage [6,472 bytes]
- (hist) Base Caller Summaries [6,473 bytes]
- (hist) GTDT [6,661 bytes]
- (hist) Rare variant tests [6,767 bytes]
- (hist) BamUtil: polishBam [6,775 bytes]
- (hist) RAREMETAL FAQ [6,819 bytes]
- (hist) ExomePicks [6,843 bytes]
- (hist) Genezoom [6,873 bytes]
- (hist) EMMAX [6,887 bytes]
- (hist) Variant Call Pipeline [6,909 bytes]
- (hist) Understanding VerifyBamID output [6,980 bytes]
- (hist) Minimac3 [7,147 bytes]
- (hist) 1000 Genomes Project Pilot 1 SNP Calling [7,158 bytes]
- (hist) Karma-colorspace [7,165 bytes]
- (hist) Tutorial: RAREMETAL [7,185 bytes]