Uploads by Goncalo
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| Date | Name | Thumbnail | Size | Description | Versions |
|---|---|---|---|---|---|
| 15:20, 9 January 2013 | Sample-manhattan-plot-A.png (file) |  |
7 KB | 1 | |
| 15:20, 9 January 2013 | Sample-manhattan-plot-B.png (file) |  |
9 KB | 1 | |
| 08:10, 23 October 2017 | 666.Worksheet 4.pdf (file) |  |
10 KB | 1 | |
| 07:08, 4 October 2017 | 666.Worksheet 3.pdf (file) | |
10 KB | 1 | |
| 08:23, 27 September 2017 | 666.Worksheet 2.pdf (file) | |
14 KB | 2 | |
| 09:08, 20 November 2017 | 666.Worksheet 5.pdf (file) | |
15 KB | 1 | |
| 16:40, 31 October 2011 | Pval-qq-sample.png (file) |  |
28 KB | Sample QQ Plot | 1 |
| 10:15, 10 December 2017 | 666.Worksheet 4.Solution.pdf (file) | |
31 KB | 1 | |
| 09:09, 22 July 2010 | QQ-plot-null.png (file) |  |
37 KB | QQ plot for a null study; from McCarthy et al (2008). | 1 |
| 19:10, 19 March 2017 | Question Sheet - 2017 - Kang et al (2010) Nature Genetics .pdf (file) | |
40 KB | Introduction to linear mixed models for GWAS. | 1 |
| 09:09, 22 July 2010 | QQ-plot-ideal.png (file) |  |
42 KB | QQ plot for an ideal study; from McCarthy et al (2008). | 1 |
| 15:20, 12 June 2013 | Scott Vrieze.jpg (file) |  |
45 KB | 1 | |
| 09:10, 22 July 2010 | QQ-plot-problem.png (file) |  |
46 KB | QQ plot for a problematic study; from McCarthy et al (2008). | 1 |
| 00:09, 14 April 2010 | LocusZoomSmall.png (file) |  |
47 KB | 1 | |
| 15:19, 9 January 2013 | Sample-manhattan-plot.png (file) |  |
49 KB | 1 | |
| 08:03, 23 October 2017 | 666.Worksheet 3.Solution.pdf (file) | |
76 KB | 1 | |
| 14:32, 25 September 2013 | Question Sheet - Howie et al (2012) Nat Genet.pdf (file) | |
77 KB | 1 | |
| 04:00, 7 November 2013 | Question Sheet - Zerbino and Birney (2008) Bioinformatics.pdf (file) | |
77 KB | Removed unnecessary second page. | 2 |
| 05:16, 8 December 2014 | Question Sheet - Kang et al (2010) Nature Genetics.pdf (file) | |
79 KB | 1 | |
| 14:33, 25 September 2013 | Question Sheet - Li et al (2010) Gen Epid.pdf (file) | |
80 KB | 1 | |
| 03:41, 1 December 2014 | Question Sheet - Liu et al (2013) Nature Genetics.pdf (file) | |
80 KB | Update with volume and page numbers. | 2 |
| 13:29, 4 December 2013 | Question Sheet - Wu et al (2011) American Journal of Human Genetics.pdf (file) | |
81 KB | 1 | |
| 19:29, 26 October 2014 | Question Sheet - Iqbal et al (2012) Nature Genetics.pdf (file) | |
81 KB | Removed dependency on Zerbino and Birney (Velvet) paper, so as to allow more flexibility in scheduling. | 2 |
| 16:08, 6 December 2013 | Question Sheet - Jun et al (2012) American Journal of Human Genetics.pdf (file) | |
82 KB | 1 | |
| 14:29, 25 September 2013 | Question Sheet - Browing and Browning (2012) Am J Hum Genet.pdf (file) | |
83 KB | 1 | |
| 09:04, 19 January 2017 | Question Sheet - Delaneau et al (2013) Nature Methods.pdf (file) | |
95 KB | 1 | |
| 08:10, 25 March 2017 | Question Sheet - 2017 - Liu et al (2013) Nature Genetics.pdf (file) | |
95 KB | 1 | |
| 05:10, 11 October 2013 | Question Sheet - Li et al (2008) Genome Research.pdf (file) | |
101 KB | 1 | |
| 21:09, 18 September 2014 | Question Sheet - Menelaou et al (2013) Bioinformatics.pdf (file) | |
103 KB | 1 | |
| 02:25, 26 September 2012 | 666.10.pdf (file) | |
103 KB | Minor tweaks. Now explicitly mentions use of the E-M algorithm to estimate subpopulations and their frequencies or for calling genotype clusters. | 3 |
| 01:31, 11 December 2017 | 666.Worksheet 5.Solution.pdf (file) | |
112 KB | 2 | |
| 08:07, 25 March 2017 | Question Sheet - 2017 - Wu et al (2011) American Journal of Human Genetics.pdf (file) | |
116 KB | 1 | |
| 09:19, 5 December 2012 | 666.24.pdf (file) | |
124 KB | Minor tweaks | 2 |
| 03:58, 7 November 2013 | Question Sheet - Li and Durbin (2009) Bioinformatics.pdf (file) | |
126 KB | Fixed typos in code example. | 2 |
| 16:01, 25 November 2013 | Question Sheet - Li and Durbin (2011) Nature.pdf (file) | |
129 KB | 1 | |
| 07:57, 13 September 2017 | 666.Worksheet 1.pdf (file) | |
130 KB | 1 | |
| 08:33, 4 October 2017 | 666.SampleMidterm.pdf (file) | |
132 KB | 1 | |
| 08:02, 23 October 2017 | 666.Worksheet 1.Solution.pdf (file) | |
138 KB | 1 | |
| 03:56, 4 December 2017 | 666.SampleMidterm02.pdf (file) | |
148 KB | 1 | |
| 08:03, 23 October 2017 | 666.Worksheet 2.Solution.pdf (file) | |
200 KB | 1 | |
| 03:33, 31 October 2012 | 666.17.pdf (file) | |
208 KB | 5 | |
| 08:34, 28 September 2011 | 666.05.pdf (file) | |
210 KB | Added frequency spectrum from 12,000 individuals. | 2 |
| 07:10, 4 October 2017 | 666.2017.08 - The E-M Algorithm.pdf (file) | |
212 KB | 1 | |
| 06:16, 3 October 2012 | 666.12.pdf (file) | |
224 KB | Minor edits. | 5 |
| 08:35, 28 September 2011 | 666.04.pdf (file) | |
230 KB | Minor typo corrections. | 4 |
| 05:46, 7 September 2010 | 666.01.pdf (file) | |
242 KB | Biostatistics 666 Introductory Lecture as of 2010/09/07 | 2 |
| 04:27, 24 November 2014 | Question Sheet - Albers et al (2010) Genome Research.pdf (file) | |
325 KB | 1 | |
| 04:28, 24 November 2014 | Question Sheet - Kircher et al (2014) Nature Genetics.pdf (file) | |
327 KB | 1 | |
| 09:36, 13 November 2017 | 666.2017.12 - Kinship Coefficients.pdf (file) | |
329 KB | 2 | |
| 01:51, 5 October 2010 | 666.09.pdf (file) | |
344 KB | Fixes several typos. | 4 |
