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  1. 830 - BasicMapper::main()‏‎ (1 revision)
  2. IGFPipe‏‎ (1 revision)
  3. Phred scale‏‎ (1 revision)
  4. How to use aspera‏‎ (1 revision)
  5. RareMetals‏‎ (1 revision)
  6. METAL COLUMNCOUNTING‏‎ (1 revision)
  7. 830 - BestAlignment::EvaluateAlignment() (main loop)‏‎ (1 revision)
  8. MERLIN format‏‎ (1 revision)
  9. Indel‏‎ (1 revision)
  10. METAL SOURCE‏‎ (1 revision)
  11. Outcomes For Mapping A Paired End‏‎ (1 revision)
  12. METAL EFFECTLABEL‏‎ (1 revision)
  13. 830 - MarkovModel::WalkRight()‏‎ (1 revision)
  14. METAL Glucose Example Script‏‎ (1 revision)
  15. SavR‏‎ (1 revision)
  16. Biostatistics 666: Copy Number Variation‏‎ (1 revision)
  17. 830 - MarkovModel::CountRecombinants()‏‎ (1 revision)
  18. Hardy Weinberg equilibrium‏‎ (1 revision)
  19. C++ Class Averages‏‎ (1 revision)
  20. METAL LOGPVALUE‏‎ (1 revision)
  21. Biostatistics 666: The Lander-Green Algorithm‏‎ (1 revision)
  22. 830 - MaqIndex::GetWord()‏‎ (1 revision)
  23. 830 - MarkovModel::CountErrorsAndRecombinants()‏‎ (1 revision)
  24. AWS Credentials‏‎ (1 revision)
  25. PhoneHome‏‎ (1 revision)
  26. Biostatistics 666: Likelihood Calculations for Large Pedigrees‏‎ (1 revision)
  27. ThunderVCF‏‎ (1 revision)
  28. 830 - MaqIndex::BuildIndex()‏‎ (1 revision)
  29. Biostatistics 666: The Possible Triangle Constraint‏‎ (1 revision)
  30. 830 - MarkovModel::CountErrors()‏‎ (1 revision)
  31. BamUtil: explainFlags‏‎ (1 revision)
  32. Biostatistics 830: Core Competencies‏‎ (1 revision)
  33. 830 - BestAlignment::isNewPosition()‏‎ (1 revision)
  34. Biostatistics 866: Core Competencies‏‎ (1 revision)
  35. Dosage convertor‏‎ (1 revision)
  36. GotCloud: AMIs‏‎ (1 revision)
  37. METAL VERBOSE‏‎ (1 revision)
  38. 830 - Haplotyper::Transpose()‏‎ (1 revision)
  39. Vcf2geno‏‎ (1 revision)
  40. FamRvTest tutorial‏‎ (1 revision)
  41. Tutorial: EMMAX GotCloud STOM: Lecture 2‏‎ (1 revision)
  42. 830 - BestAlignment::IterateCache()‏‎ (1 revision)
  43. 830 - MarkovModel::Impute()‏‎ (1 revision)
  44. MetaMinimac‏‎ (1 revision)
  45. Biostatistics 666: Analysis of Low Pass Sequence Data‏‎ (1 revision)
  46. Ancestry‏‎ (1 revision)
  47. Biostatistics 615/815 Winter 2011‏‎ (1 revision)
  48. HAPMIX‏‎ (1 revision)
  49. Imputation Server: Example‏‎ (1 revision)
  50. Biostatistics 830: Fall 2013 Edition‏‎ (1 revision)
  51. Rare-metal-worker‏‎ (1 revision)
  52. Utility Library‏‎ (1 revision)
  53. NHLBI Exome Sequencing Project‏‎ (2 revisions)
  54. Makefile.tool‏‎ (2 revisions)
  55. GotCloud: Reference Files‏‎ (2 revisions)
  56. Tom Blackwell‏‎ (2 revisions)
  57. MaCH: Pedigree with Integer Allele Codes‏‎ (2 revisions)
  58. Gene Ontology‏‎ (2 revisions)
  59. Goncalo Abecasis: Interview with Christiana Fogg‏‎ (2 revisions)
  60. Mantra.cpp‏‎ (2 revisions)
  61. SAM: Filtering Reads‏‎ (2 revisions)
  62. StringMap.h‏‎ (2 revisions)
  63. Biostatistics 666: Rare Variant Burden Tests‏‎ (2 revisions)
  64. 830 - Haplotyper::ScoreLeftConditional() (smart, complicated)‏‎ (2 revisions)
  65. LiftRsNumber.py‏‎ (2 revisions)
  66. 830 - MarkovModel::Transpose()‏‎ (2 revisions)
  67. RareSimu‏‎ (2 revisions)
  68. 830 - MarkovModel::WalkLeft()‏‎ (2 revisions)
  69. Biostatistics 666: Contemporary Human Genetics‏‎ (2 revisions)
  70. 830 - BestAlignment::MaqAlignment()‏‎ (2 revisions)
  71. METAL GENOMICCONTROL‏‎ (2 revisions)
  72. Editing Sequence Analysis Practice 2011/03/10‏‎ (2 revisions)
  73. GlfMerge‏‎ (2 revisions)
  74. LiftMap.py‏‎ (2 revisions)
  75. Polymutt beta‏‎ (2 revisions)
  76. Parameters.h‏‎ (2 revisions)
  77. Biostatistics 666: Core Competencies‏‎ (2 revisions)
  78. 830 - BestAlignment::ClearPositions()‏‎ (2 revisions)
  79. Biostatistics 815 Term Project‏‎ (2 revisions)
  80. 830 - BestAlignment::EvaluateAlignment() (detailed comparison)‏‎ (2 revisions)
  81. 830 - Haplotyper::ConditionOnData()‏‎ (2 revisions)
  82. 830 - MaqIndex::LookupWord()‏‎ (2 revisions)
  83. Stouffer Method for Meta-Analysis‏‎ (2 revisions)
  84. IMPUTE2‏‎ (2 revisions)
  85. Biostatistics 666: Advanced Haplotype Estimation‏‎ (2 revisions)
  86. 830 - Haplotyper::ImputeGenotypes() (edge)‏‎ (2 revisions)
  87. VcfGenomeStat‏‎ (2 revisions)
  88. BamUtil: readIndexedBam‏‎ (2 revisions)
  89. BamUtil: readReference‏‎ (2 revisions)
  90. Gzip File‏‎ (2 revisions)
  91. VCF‏‎ (2 revisions)
  92. Biostatistics 666: Genotype Imputation‏‎ (2 revisions)
  93. Merlin‏‎ (2 revisions)
  94. METAL ADDFILTER‏‎ (2 revisions)
  95. Genotype Likelihood based Hardy-Weinberg Test‏‎ (2 revisions)
  96. SplitRef‏‎ (2 revisions)
  97. Biostatistics 666: Multipoint Analysis in Sibling Pairs‏‎ (2 revisions)
  98. Biostatistics 666: Relationship Checking‏‎ (2 revisions)
  99. 830 - Haplotyper::SampleChromosomes()‏‎ (2 revisions)
  100. 830 - Haplotyper::SetupPrior()‏‎ (2 revisions)
  101. Example‏‎ (2 revisions)
  102. 830 - MarkovModel::Condition()‏‎ (2 revisions)
  103. Biostatistics 666: Analysis of Copy Number Using Sequence Data‏‎ (2 revisions)
  104. MaCH Options‏‎ (2 revisions)
  105. 830 - MaqIndex::CompareToIndex()‏‎ (2 revisions)
  106. Mary Kate Wing‏‎ (2 revisions)
  107. CHARGE‏‎ (3 revisions)
  108. Screen Commands‏‎ (3 revisions)
  109. Lars Fritsche‏‎ (3 revisions)
  110. Ligate Minimac‏‎ (3 revisions)
  111. TOPMed Site Visit 2018‏‎ (3 revisions)
  112. BAM to FASTQ‏‎ (3 revisions)
  113. Xiaowei Zhan‏‎ (3 revisions)
  114. Rare Variant Analysis and Meta-Analysis‏‎ (3 revisions)
  115. METAL CUSTOMVARIABLE‏‎ (3 revisions)
  116. Biostatistics 666: Association Tests in Structured Populations‏‎ (3 revisions)
  117. MappabilityScores‏‎ (3 revisions)
  118. Biostatistics 666: Power of Genomewide Association Studies‏‎ (3 revisions)
  119. FASTA‏‎ (3 revisions)
  120. Code Sample: Generating Manhattan Plots in R‏‎ (3 revisions)
  121. 830 - Haplotyper::ImputeGenotypes() (internal)‏‎ (3 revisions)
  122. Ann Arbor Travel Basics‏‎ (3 revisions)
  123. Biostatistics 666: Variance Component Analyses‏‎ (3 revisions)
  124. TinySimulator‏‎ (3 revisions)
  125. GWAS‏‎ (3 revisions)
  126. Biostatistics 666: Applications of the Lander-Green Algorithm‏‎ (3 revisions)
  127. BamUtil: dumpIndex‏‎ (3 revisions)
  128. Kyoto Encyclopedia of Genes and Genomes‏‎ (3 revisions)
  129. Sara Rashkin‏‎ (3 revisions)
  130. 830 - Haplotyper::ImputeGenotypes()‏‎ (3 revisions)
  131. Zlib‏‎ (3 revisions)
  132. 830 - Haplotyper::SummarizeOptions()‏‎ (3 revisions)
  133. BamUtil: dumpRefInfo‏‎ (3 revisions)
  134. Understanding QPLOT output‏‎ (3 revisions)
  135. 830 - Haplotyper::RandomSetup()‏‎ (3 revisions)
  136. GBR60vc.conf‏‎ (3 revisions)
  137. BamUtil: findCigars‏‎ (3 revisions)
  138. Biostatistics 666: Haplotype Estimation‏‎ (4 revisions)
  139. SAV Command Line Interface‏‎ (4 revisions)
  140. RAREFY FAQ‏‎ (4 revisions)
  141. Variant Call Pipeline‏‎ (4 revisions)
  142. 830 - Haplotyper::SampleHaplotypes()‏‎ (4 revisions)
  143. Genotype Likelihood based Inbreeding Coefficient‏‎ (4 revisions)
  144. Tutorial: EMMAX GotCloud STOM: Lecture 6‏‎ (4 revisions)
  145. Links to Sequence Analysis Tools‏‎ (4 revisions)
  146. BamUtil: revert‏‎ (4 revisions)
  147. StatsTools‏‎ (4 revisions)
  148. 830 - Haplotyper::ScoreLeftConditional()‏‎ (4 revisions)
  149. 830 - MINIMAC::main()‏‎ (4 revisions)
  150. Biostatistics 666: Introduction to the Coalescent‏‎ (4 revisions)
  151. TabAnno‏‎ (4 revisions)
  152. CheckVCF.py‏‎ (4 revisions)
  153. Biostatistics 666: Whole Genome Sequencing‏‎ (4 revisions)
  154. Biostatistics 666: Advanced Coalescent, Computation with the Coalescent‏‎ (4 revisions)
  155. C++ Class: Pedigree Example‏‎ (4 revisions)
  156. Alan Kwong‏‎ (4 revisions)
  157. Power Calculations: Quantitative Traits‏‎ (4 revisions)
  158. 830 - Haplotyper::SampleOneHaplotype()‏‎ (4 revisions)
  159. Tramp‏‎ (4 revisions)
  160. VerifyIDintensity‏‎ (4 revisions)
  161. CigarRoller Proposed Update‏‎ (4 revisions)
  162. Biostatistics 666: Linkage Tests for Pairs of Individuals‏‎ (4 revisions)
  163. BamUtil: splitChromosome‏‎ (4 revisions)
  164. Biostatistics 666: Linkage Analysis in Sibling Pairs‏‎ (4 revisions)
  165. Pileup‏‎ (4 revisions)
  166. TrioCaller:Archive‏‎ (4 revisions)
  167. Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium‏‎ (4 revisions)
  168. Minimac Diagnostics‏‎ (4 revisions)
  169. Savvy C++ Library‏‎ (4 revisions)
  170. Samtools-hybrid‏‎ (4 revisions)
  171. Basic Linux Intro‏‎ (4 revisions)
  172. Ben Lerch‏‎ (4 revisions)
  173. BamUtil: dumpHeader‏‎ (4 revisions)
  174. AWS Resources‏‎ (4 revisions)
  175. Biostatistics 666: Introduction to the E-M Algorithm‏‎ (4 revisions)
  176. Understanding VerifyBamID output‏‎ (5 revisions)
  177. Fst‏‎ (5 revisions)
  178. NHLBI Informatics Resource‏‎ (5 revisions)
  179. Biostatistics 666: Introduction to De Novo Assembly‏‎ (5 revisions)
  180. Meta Analysis of SNPxEnvironment Interaction‏‎ (5 revisions)
  181. BamUtil: asp‏‎ (5 revisions)
  182. BamPileup‏‎ (5 revisions)
  183. Biostatistics 666: Modeling Variation in the Coalescent‏‎ (5 revisions)
  184. M3VCF Files‏‎ (5 revisions)
  185. StatgenTools‏‎ (5 revisions)
  186. Read Mapping‏‎ (5 revisions)
  187. Biostatistics 666: Haplotype Association Tests‏‎ (5 revisions)
  188. Mapping Quality Scores‏‎ (5 revisions)
  189. Vpeep‏‎ (5 revisions)
  190. BamUtil: FAQ‏‎ (5 revisions)
  191. Rvtests‏‎ (5 revisions)
  192. Mach2dat: Association with MACH output‏‎ (5 revisions)
  193. PedScript‏‎ (5 revisions)
  194. BamUtil: gapInfo‏‎ (5 revisions)
  195. Installing MinGW & MSYS on Windows‏‎ (5 revisions)
  196. Configure GotCloud‏‎ (5 revisions)
  197. Minimac3 - Full List of Options‏‎ (6 revisions)
  198. Scott Vrieze‏‎ (6 revisions)
  199. GotCloud: RedHat Package‏‎ (6 revisions)
  200. GotCloud: Filters‏‎ (6 revisions)
  201. BamUtil: squeeze‏‎ (6 revisions)
  202. SeqShop: Estimates of Genetic Ancestry Practical, May 2015‏‎ (6 revisions)
  203. Tutorial: EMMAX GotCloud STOM: Lecture 5‏‎ (6 revisions)
  204. Garlic‏‎ (6 revisions)
  205. SNP Call Set Properties‏‎ (6 revisions)
  206. Minimac3 Cookbook : Pre-Phasing‏‎ (6 revisions)
  207. Genotype Likelihood based Allele Frequency‏‎ (6 revisions)
  208. Code Sample: Generating QQ Plots in R‏‎ (6 revisions)
  209. An example of using libcsg‏‎ (6 revisions)
  210. BamUtil: indelDiscordance‏‎ (6 revisions)
  211. Understanding vcf-summary output‏‎ (6 revisions)
  212. Computer How-Tos‏‎ (6 revisions)
  213. Genotype Likelihood Based Allele Balance‏‎ (6 revisions)
  214. FastQ Validation Criteria‏‎ (6 revisions)
  215. BAM‏‎ (6 revisions)
  216. Biostatistics 666: Advanced Coalescent, Changing Population Size‏‎ (6 revisions)
  217. Biostatistics 666: Maximum Likelihood Allele Frequency Estimation‏‎ (6 revisions)
  218. Git Cheat Sheet‏‎ (6 revisions)
  219. Mount S3 Volume‏‎ (7 revisions)
  220. SplitPed‏‎ (7 revisions)
  221. SeqShop: Association Analysis, May 2015‏‎ (7 revisions)
  222. BamUtil: dumpAsp‏‎ (7 revisions)
  223. SAM/BAM Convert Sequence‏‎ (7 revisions)
  224. Minimac4 Documentation‏‎ (7 revisions)
  225. SeqShop: Friday - Practicing what we learned, June 2014‏‎ (7 revisions)
  226. PileupBasedVariantCalling‏‎ (7 revisions)
  227. Biostatistics 666: Hardy-Weinberg Equilibrium‏‎ (7 revisions)
  228. Better X Sessions from Home (NX)‏‎ (7 revisions)
  229. SeqShop: Aligning Your Own Genome, May 2015‏‎ (7 revisions)
  230. GotCloud: Configuration‏‎ (7 revisions)
  231. Jennifer Bragg-Gresham‏‎ (7 revisions)
  232. RAREMETALWORKER X‏‎ (7 revisions)
  233. Bayesdenovo‏‎ (8 revisions)
  234. Debuggers‏‎ (8 revisions)
  235. Biostatistics 666: Introductory Lecture‏‎ (8 revisions)
  236. METAL FAQ‏‎ (8 revisions)
  237. Biostatistics 501: Main Page‏‎ (8 revisions)
  238. Biostatistics 666: Modeling Recombination and Migration in the Coalescent‏‎ (8 revisions)
  239. Gzip‏‎ (8 revisions)
  240. Sayantan Das‏‎ (8 revisions)
  241. Examples of Read Mapping with Karma and BWA‏‎ (8 revisions)
  242. Idriver‏‎ (8 revisions)
  243. BaseQualityCheck‏‎ (8 revisions)
  244. Minimac3 Cookbook : Converting Files to VCF‏‎ (8 revisions)
  245. Goncalo Abecasis‏‎ (9 revisions)
  246. Dajiang Liu‏‎ (9 revisions)
  247. Regions of high linkage disequilibrium (LD)‏‎ (9 revisions)
  248. ContaminationDetection‏‎ (9 revisions)
  249. Using Gotcloud on Flux‏‎ (9 revisions)
  250. New Fugue‏‎ (9 revisions)

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