Pages with the fewest revisions

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  1. Rare-metal-worker‏‎ (1 revision)
  2. Biostatistics 615/815 Winter 2011‏‎ (1 revision)
  3. Biostatistics 830: Fall 2013 Edition‏‎ (1 revision)
  4. Utility Library‏‎ (1 revision)
  5. IGFPipe‏‎ (1 revision)
  6. Phred scale‏‎ (1 revision)
  7. 830 - BasicMapper::main()‏‎ (1 revision)
  8. RareMetals‏‎ (1 revision)
  9. METAL COLUMNCOUNTING‏‎ (1 revision)
  10. 830 - BestAlignment::EvaluateAlignment() (main loop)‏‎ (1 revision)
  11. How to use aspera‏‎ (1 revision)
  12. MERLIN format‏‎ (1 revision)
  13. METAL EFFECTLABEL‏‎ (1 revision)
  14. Indel‏‎ (1 revision)
  15. METAL SOURCE‏‎ (1 revision)
  16. Outcomes For Mapping A Paired End‏‎ (1 revision)
  17. SavR‏‎ (1 revision)
  18. Biostatistics 666: Copy Number Variation‏‎ (1 revision)
  19. 830 - MarkovModel::CountRecombinants()‏‎ (1 revision)
  20. 830 - MarkovModel::WalkRight()‏‎ (1 revision)
  21. METAL Glucose Example Script‏‎ (1 revision)
  22. METAL LOGPVALUE‏‎ (1 revision)
  23. Biostatistics 666: The Lander-Green Algorithm‏‎ (1 revision)
  24. 830 - MaqIndex::GetWord()‏‎ (1 revision)
  25. Hardy Weinberg equilibrium‏‎ (1 revision)
  26. C++ Class Averages‏‎ (1 revision)
  27. Biostatistics 666: Likelihood Calculations for Large Pedigrees‏‎ (1 revision)
  28. ThunderVCF‏‎ (1 revision)
  29. 830 - MarkovModel::CountErrorsAndRecombinants()‏‎ (1 revision)
  30. AWS Credentials‏‎ (1 revision)
  31. PhoneHome‏‎ (1 revision)
  32. Biostatistics 666: The Possible Triangle Constraint‏‎ (1 revision)
  33. 830 - MarkovModel::CountErrors()‏‎ (1 revision)
  34. 830 - MaqIndex::BuildIndex()‏‎ (1 revision)
  35. 830 - BestAlignment::isNewPosition()‏‎ (1 revision)
  36. BamUtil: explainFlags‏‎ (1 revision)
  37. Biostatistics 830: Core Competencies‏‎ (1 revision)
  38. Dosage convertor‏‎ (1 revision)
  39. GotCloud: AMIs‏‎ (1 revision)
  40. Biostatistics 866: Core Competencies‏‎ (1 revision)
  41. Vcf2geno‏‎ (1 revision)
  42. FamRvTest tutorial‏‎ (1 revision)
  43. Tutorial: EMMAX GotCloud STOM: Lecture 2‏‎ (1 revision)
  44. 830 - BestAlignment::IterateCache()‏‎ (1 revision)
  45. METAL VERBOSE‏‎ (1 revision)
  46. 830 - Haplotyper::Transpose()‏‎ (1 revision)
  47. MetaMinimac‏‎ (1 revision)
  48. 830 - MarkovModel::Impute()‏‎ (1 revision)
  49. Ancestry‏‎ (1 revision)
  50. Biostatistics 666: Analysis of Low Pass Sequence Data‏‎ (1 revision)
  51. HAPMIX‏‎ (1 revision)
  52. Imputation Server: Example‏‎ (1 revision)
  53. 830 - MarkovModel::Condition()‏‎ (2 revisions)
  54. Biostatistics 666: Analysis of Copy Number Using Sequence Data‏‎ (2 revisions)
  55. Example‏‎ (2 revisions)
  56. 830 - MaqIndex::CompareToIndex()‏‎ (2 revisions)
  57. Mary Kate Wing‏‎ (2 revisions)
  58. MaCH Options‏‎ (2 revisions)
  59. NHLBI Exome Sequencing Project‏‎ (2 revisions)
  60. GotCloud: Reference Files‏‎ (2 revisions)
  61. Tom Blackwell‏‎ (2 revisions)
  62. Makefile.tool‏‎ (2 revisions)
  63. Goncalo Abecasis: Interview with Christiana Fogg‏‎ (2 revisions)
  64. Mantra.cpp‏‎ (2 revisions)
  65. SAM: Filtering Reads‏‎ (2 revisions)
  66. StringMap.h‏‎ (2 revisions)
  67. Biostatistics 666: Rare Variant Burden Tests‏‎ (2 revisions)
  68. MaCH: Pedigree with Integer Allele Codes‏‎ (2 revisions)
  69. Gene Ontology‏‎ (2 revisions)
  70. 830 - MarkovModel::Transpose()‏‎ (2 revisions)
  71. 830 - Haplotyper::ScoreLeftConditional() (smart, complicated)‏‎ (2 revisions)
  72. LiftRsNumber.py‏‎ (2 revisions)
  73. RareSimu‏‎ (2 revisions)
  74. Editing Sequence Analysis Practice 2011/03/10‏‎ (2 revisions)
  75. GlfMerge‏‎ (2 revisions)
  76. LiftMap.py‏‎ (2 revisions)
  77. 830 - MarkovModel::WalkLeft()‏‎ (2 revisions)
  78. Biostatistics 666: Contemporary Human Genetics‏‎ (2 revisions)
  79. 830 - BestAlignment::MaqAlignment()‏‎ (2 revisions)
  80. METAL GENOMICCONTROL‏‎ (2 revisions)
  81. Polymutt beta‏‎ (2 revisions)
  82. 830 - BestAlignment::ClearPositions()‏‎ (2 revisions)
  83. Biostatistics 815 Term Project‏‎ (2 revisions)
  84. Parameters.h‏‎ (2 revisions)
  85. Biostatistics 666: Core Competencies‏‎ (2 revisions)
  86. IMPUTE2‏‎ (2 revisions)
  87. 830 - BestAlignment::EvaluateAlignment() (detailed comparison)‏‎ (2 revisions)
  88. 830 - Haplotyper::ConditionOnData()‏‎ (2 revisions)
  89. 830 - MaqIndex::LookupWord()‏‎ (2 revisions)
  90. Stouffer Method for Meta-Analysis‏‎ (2 revisions)
  91. Gzip File‏‎ (2 revisions)
  92. VCF‏‎ (2 revisions)
  93. Biostatistics 666: Advanced Haplotype Estimation‏‎ (2 revisions)
  94. 830 - Haplotyper::ImputeGenotypes() (edge)‏‎ (2 revisions)
  95. VcfGenomeStat‏‎ (2 revisions)
  96. BamUtil: readIndexedBam‏‎ (2 revisions)
  97. BamUtil: readReference‏‎ (2 revisions)
  98. Merlin‏‎ (2 revisions)
  99. METAL ADDFILTER‏‎ (2 revisions)
  100. Biostatistics 666: Genotype Imputation‏‎ (2 revisions)
  101. SplitRef‏‎ (2 revisions)
  102. Biostatistics 666: Multipoint Analysis in Sibling Pairs‏‎ (2 revisions)
  103. Genotype Likelihood based Hardy-Weinberg Test‏‎ (2 revisions)
  104. Biostatistics 666: Relationship Checking‏‎ (2 revisions)
  105. 830 - Haplotyper::SetupPrior()‏‎ (2 revisions)
  106. 830 - Haplotyper::SampleChromosomes()‏‎ (2 revisions)
  107. GBR60vc.conf‏‎ (3 revisions)
  108. 830 - Haplotyper::RandomSetup()‏‎ (3 revisions)
  109. BamUtil: findCigars‏‎ (3 revisions)
  110. CHARGE‏‎ (3 revisions)
  111. Lars Fritsche‏‎ (3 revisions)
  112. Screen Commands‏‎ (3 revisions)
  113. TOPMed Site Visit 2018‏‎ (3 revisions)
  114. Ligate Minimac‏‎ (3 revisions)
  115. BAM to FASTQ‏‎ (3 revisions)
  116. Xiaowei Zhan‏‎ (3 revisions)
  117. Rare Variant Analysis and Meta-Analysis‏‎ (3 revisions)
  118. MappabilityScores‏‎ (3 revisions)
  119. METAL CUSTOMVARIABLE‏‎ (3 revisions)
  120. Biostatistics 666: Association Tests in Structured Populations‏‎ (3 revisions)
  121. Biostatistics 666: Power of Genomewide Association Studies‏‎ (3 revisions)
  122. Code Sample: Generating Manhattan Plots in R‏‎ (3 revisions)
  123. FASTA‏‎ (3 revisions)
  124. Ann Arbor Travel Basics‏‎ (3 revisions)
  125. 830 - Haplotyper::ImputeGenotypes() (internal)‏‎ (3 revisions)
  126. Biostatistics 666: Variance Component Analyses‏‎ (3 revisions)
  127. TinySimulator‏‎ (3 revisions)
  128. GWAS‏‎ (3 revisions)
  129. Kyoto Encyclopedia of Genes and Genomes‏‎ (3 revisions)
  130. Sara Rashkin‏‎ (3 revisions)
  131. Biostatistics 666: Applications of the Lander-Green Algorithm‏‎ (3 revisions)
  132. BamUtil: dumpIndex‏‎ (3 revisions)
  133. Understanding QPLOT output‏‎ (3 revisions)
  134. 830 - Haplotyper::ImputeGenotypes()‏‎ (3 revisions)
  135. Zlib‏‎ (3 revisions)
  136. 830 - Haplotyper::SummarizeOptions()‏‎ (3 revisions)
  137. BamUtil: dumpRefInfo‏‎ (3 revisions)
  138. Basic Linux Intro‏‎ (4 revisions)
  139. Ben Lerch‏‎ (4 revisions)
  140. AWS Resources‏‎ (4 revisions)
  141. Biostatistics 666: Introduction to the E-M Algorithm‏‎ (4 revisions)
  142. BamUtil: dumpHeader‏‎ (4 revisions)
  143. RAREFY FAQ‏‎ (4 revisions)
  144. Biostatistics 666: Haplotype Estimation‏‎ (4 revisions)
  145. SAV Command Line Interface‏‎ (4 revisions)
  146. Tutorial: EMMAX GotCloud STOM: Lecture 6‏‎ (4 revisions)
  147. Variant Call Pipeline‏‎ (4 revisions)
  148. 830 - Haplotyper::SampleHaplotypes()‏‎ (4 revisions)
  149. Genotype Likelihood based Inbreeding Coefficient‏‎ (4 revisions)
  150. BamUtil: revert‏‎ (4 revisions)
  151. StatsTools‏‎ (4 revisions)
  152. 830 - Haplotyper::ScoreLeftConditional()‏‎ (4 revisions)
  153. Links to Sequence Analysis Tools‏‎ (4 revisions)
  154. 830 - MINIMAC::main()‏‎ (4 revisions)
  155. Biostatistics 666: Introduction to the Coalescent‏‎ (4 revisions)
  156. CheckVCF.py‏‎ (4 revisions)
  157. Biostatistics 666: Whole Genome Sequencing‏‎ (4 revisions)
  158. Biostatistics 666: Advanced Coalescent, Computation with the Coalescent‏‎ (4 revisions)
  159. TabAnno‏‎ (4 revisions)
  160. Alan Kwong‏‎ (4 revisions)
  161. C++ Class: Pedigree Example‏‎ (4 revisions)
  162. Power Calculations: Quantitative Traits‏‎ (4 revisions)
  163. 830 - Haplotyper::SampleOneHaplotype()‏‎ (4 revisions)
  164. CigarRoller Proposed Update‏‎ (4 revisions)
  165. Biostatistics 666: Linkage Tests for Pairs of Individuals‏‎ (4 revisions)
  166. Tramp‏‎ (4 revisions)
  167. VerifyIDintensity‏‎ (4 revisions)
  168. BamUtil: splitChromosome‏‎ (4 revisions)
  169. Pileup‏‎ (4 revisions)
  170. TrioCaller:Archive‏‎ (4 revisions)
  171. Biostatistics 666: Linkage Analysis in Sibling Pairs‏‎ (4 revisions)
  172. Savvy C++ Library‏‎ (4 revisions)
  173. Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium‏‎ (4 revisions)
  174. Minimac Diagnostics‏‎ (4 revisions)
  175. Samtools-hybrid‏‎ (4 revisions)
  176. Installing MinGW & MSYS on Windows‏‎ (5 revisions)
  177. Configure GotCloud‏‎ (5 revisions)
  178. Understanding VerifyBamID output‏‎ (5 revisions)
  179. Fst‏‎ (5 revisions)
  180. NHLBI Informatics Resource‏‎ (5 revisions)
  181. Biostatistics 666: Introduction to De Novo Assembly‏‎ (5 revisions)
  182. Meta Analysis of SNPxEnvironment Interaction‏‎ (5 revisions)
  183. BamUtil: asp‏‎ (5 revisions)
  184. BamPileup‏‎ (5 revisions)
  185. Biostatistics 666: Modeling Variation in the Coalescent‏‎ (5 revisions)
  186. M3VCF Files‏‎ (5 revisions)
  187. StatgenTools‏‎ (5 revisions)
  188. BamUtil: FAQ‏‎ (5 revisions)
  189. Read Mapping‏‎ (5 revisions)
  190. Biostatistics 666: Haplotype Association Tests‏‎ (5 revisions)
  191. Mapping Quality Scores‏‎ (5 revisions)
  192. Vpeep‏‎ (5 revisions)
  193. Mach2dat: Association with MACH output‏‎ (5 revisions)
  194. BamUtil: gapInfo‏‎ (5 revisions)
  195. Rvtests‏‎ (5 revisions)
  196. PedScript‏‎ (5 revisions)
  197. Biostatistics 666: Advanced Coalescent, Changing Population Size‏‎ (6 revisions)
  198. BAM‏‎ (6 revisions)
  199. Git Cheat Sheet‏‎ (6 revisions)
  200. Biostatistics 666: Maximum Likelihood Allele Frequency Estimation‏‎ (6 revisions)
  201. Minimac3 - Full List of Options‏‎ (6 revisions)
  202. GotCloud: RedHat Package‏‎ (6 revisions)
  203. GotCloud: Filters‏‎ (6 revisions)
  204. Scott Vrieze‏‎ (6 revisions)
  205. BamUtil: squeeze‏‎ (6 revisions)
  206. SeqShop: Estimates of Genetic Ancestry Practical, May 2015‏‎ (6 revisions)
  207. Garlic‏‎ (6 revisions)
  208. Tutorial: EMMAX GotCloud STOM: Lecture 5‏‎ (6 revisions)
  209. SNP Call Set Properties‏‎ (6 revisions)
  210. Minimac3 Cookbook : Pre-Phasing‏‎ (6 revisions)
  211. Genotype Likelihood based Allele Frequency‏‎ (6 revisions)
  212. An example of using libcsg‏‎ (6 revisions)
  213. Code Sample: Generating QQ Plots in R‏‎ (6 revisions)
  214. BamUtil: indelDiscordance‏‎ (6 revisions)
  215. Understanding vcf-summary output‏‎ (6 revisions)
  216. Computer How-Tos‏‎ (6 revisions)
  217. FastQ Validation Criteria‏‎ (6 revisions)
  218. Genotype Likelihood Based Allele Balance‏‎ (6 revisions)
  219. Jennifer Bragg-Gresham‏‎ (7 revisions)
  220. RAREMETALWORKER X‏‎ (7 revisions)
  221. Mount S3 Volume‏‎ (7 revisions)
  222. SplitPed‏‎ (7 revisions)
  223. BamUtil: dumpAsp‏‎ (7 revisions)
  224. SeqShop: Association Analysis, May 2015‏‎ (7 revisions)
  225. SAM/BAM Convert Sequence‏‎ (7 revisions)
  226. Minimac4 Documentation‏‎ (7 revisions)
  227. SeqShop: Friday - Practicing what we learned, June 2014‏‎ (7 revisions)
  228. PileupBasedVariantCalling‏‎ (7 revisions)
  229. Biostatistics 666: Hardy-Weinberg Equilibrium‏‎ (7 revisions)
  230. Better X Sessions from Home (NX)‏‎ (7 revisions)
  231. GotCloud: Configuration‏‎ (7 revisions)
  232. SeqShop: Aligning Your Own Genome, May 2015‏‎ (7 revisions)
  233. BaseQualityCheck‏‎ (8 revisions)
  234. Minimac3 Cookbook : Converting Files to VCF‏‎ (8 revisions)
  235. Debuggers‏‎ (8 revisions)
  236. Bayesdenovo‏‎ (8 revisions)
  237. Biostatistics 666: Introductory Lecture‏‎ (8 revisions)
  238. Biostatistics 501: Main Page‏‎ (8 revisions)
  239. METAL FAQ‏‎ (8 revisions)
  240. Gzip‏‎ (8 revisions)
  241. Biostatistics 666: Modeling Recombination and Migration in the Coalescent‏‎ (8 revisions)
  242. Sayantan Das‏‎ (8 revisions)
  243. Idriver‏‎ (8 revisions)
  244. Examples of Read Mapping with Karma and BWA‏‎ (8 revisions)
  245. BAFRegress‏‎ (9 revisions)
  246. GotCloud: Amazon‏‎ (9 revisions)
  247. Dajiang Liu‏‎ (9 revisions)
  248. Goncalo Abecasis‏‎ (9 revisions)
  249. Regions of high linkage disequilibrium (LD)‏‎ (9 revisions)
  250. ContaminationDetection‏‎ (9 revisions)

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