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  1. Biostatistics 666: Analysis of Low Pass Sequence Data
  2. Biostatistics 666: Applications of the Lander-Green Algorithm
  3. Biostatistics 666: Association Tests in Structured Populations
  4. Biostatistics 666: Contemporary Human Genetics
  5. Biostatistics 666: Copy Number Variation
  6. Biostatistics 666: Core Competencies
  7. Biostatistics 666: Course Introduction and Hardy Weinberg Equilibrium
  8. Biostatistics 666: Genotype Imputation
  9. Biostatistics 666: Haplotype Association Tests
  10. Biostatistics 666: Haplotype Estimation
  11. Biostatistics 666: Hardy-Weinberg Equilibrium
  12. Biostatistics 666: Introduction to De Novo Assembly
  13. Biostatistics 666: Introduction to the Coalescent
  14. Biostatistics 666: Introduction to the E-M Algorithm
  15. Biostatistics 666: Introductory Lecture
  16. Biostatistics 666: Likelihood Calculations for Large Pedigrees
  17. Biostatistics 666: Linkage Analysis in Sibling Pairs
  18. Biostatistics 666: Linkage Disequilibrium
  19. Biostatistics 666: Linkage Tests for Pairs of Individuals
  20. Biostatistics 666: Main Page
  21. Biostatistics 666: Maximum Likelihood Allele Frequency Estimation
  22. Biostatistics 666: Modeling Recombination and Migration in the Coalescent
  23. Biostatistics 666: Modeling Variation in the Coalescent
  24. Biostatistics 666: Multipoint Analysis in Sibling Pairs
  25. Biostatistics 666: Power of Genomewide Association Studies
  26. Biostatistics 666: Rare Variant Burden Tests
  27. Biostatistics 666: Relationship Checking
  28. Biostatistics 666: The Lander-Green Algorithm
  29. Biostatistics 666: The Possible Triangle Constraint
  30. Biostatistics 666: Variance Component Analyses
  31. Biostatistics 666: Whole Genome Sequencing
  32. Biostatistics 815 Term Project
  33. Biostatistics 830: Core Competencies
  34. Biostatistics 830: Fall 2013 Edition
  35. Biostatistics 830: Main Page
  36. Biostatistics 830 - Code Snippets
  37. Biostatistics 866: Core Competencies
  38. Biostatistics 866: Main Page
  39. C++ Class: CigarRoller
  40. C++ Class: FastQFile
  41. C++ Class: InputFile
  42. C++ Class: Pedigree Example
  43. C++ Class: SamFile
  44. C++ Class: SamFileHeader
  45. C++ Class: SamRecord
  46. C++ Class Averages
  47. C++ Library: FASTQ Change Log
  48. C++ Library: general Change Log
  49. C++ Library: libStatGen
  50. CHARGE
  51. CSG Tech Talks
  52. CalcMatch
  53. CheckVCF.py
  54. ChunkChromosome
  55. CigarRoller Proposed Update
  56. Class Notes
  57. Code Sample: Generating Manhattan Plots in R
  58. Code Sample: Generating QQ Plots in R
  59. Computer How-Tos
  60. Configure GotCloud
  61. ContaminationDetection
  62. Creating a Snapshot on EC2
  63. Creating an AMI on EC2
  64. Dajiang Liu
  65. Debuggers
  66. DosageConvertor
  67. Dosage convertor
  68. EMADS
  69. EMADS Primary Analysis Plan
  70. EMMAX
  71. EPACTS
  72. EPACTS for DIAGRAM
  73. Editing Sequence Analysis Practice 2011/03/10
  74. Evaluating a Read Mapper on Simulated Data
  75. Example
  76. Examples of Read Mapping with Karma and BWA
  77. ExomePicks
  78. Exome Chip Design
  79. FASTA
  80. FTEC
  81. FamLDCaller
  82. FamRvTest command
  83. FamRvTest tutorial
  84. Famrvtest
  85. FastQValidator
  86. FastQ Validation Criteria
  87. Fst
  88. GBR60vc.conf
  89. GLF
  90. GREGOR
  91. GTDT
  92. GWAS
  93. Garlic
  94. Gene Ontology
  95. Generic Exome Analysis Plan
  96. Genezoom
  97. Genotype Likelihood Based Allele Balance
  98. Genotype Likelihood based Allele Frequency
  99. Genotype Likelihood based Hardy-Weinberg Test
  100. Genotype Likelihood based Inbreeding Coefficient
  101. Git Cheat Sheet
  102. Git FAQs
  103. GlfMerge
  104. GlfMultiples
  105. GlfSingle
  106. GlfTrio
  107. Goncalo Abecasis
  108. Goncalo Abecasis: Interview with Christiana Fogg
  109. GotCloud
  110. GotCloud: AMIs
  111. GotCloud: Alignment Pipeline
  112. GotCloud: Alignment Sub-Pipelines
  113. GotCloud: Amazon
  114. GotCloud: Amazon Demo
  115. GotCloud: Binary Releases
  116. GotCloud: Configuration
  117. GotCloud: Creating a New Pipeline
  118. GotCloud: FAQs
  119. GotCloud: Filters
  120. GotCloud: Genetic Reference and Resource Files
  121. GotCloud: GenomeSTRiP Pipeline
  122. GotCloud: RedHat Package
  123. GotCloud: Reference Files
  124. GotCloud: Source Releases
  125. GotCloud: Variant Calling Options
  126. GotCloud: Variant Calling Pipeline
  127. GotCloud: Versions
  128. Gzip
  129. Gzip File
  130. HAPMIX
  131. Haploxt
  132. Hardy Weinberg equilibrium
  133. How To Use Git
  134. How to use aspera
  135. IGFPipe
  136. IMPUTE2
  137. IMPUTE2: 1000 Genomes Imputation Cookbook
  138. Idriver
  139. Imputation Server: Example
  140. Indel
  141. Installing MinGW & MSYS on Windows
  142. Introduction to new students
  143. Jennifer Bragg-Gresham
  144. Karma
  145. Karma-colorspace
  146. Kyoto Encyclopedia of Genes and Genomes
  147. LASER
  148. Lars Fritsche
  149. LibStatGen: ASP
  150. LibStatGen: BAM
  151. LibStatGen: FASTQ
  152. LibStatGen: GLF
  153. LibStatGen: VCF
  154. LibStatGen: general
  155. LibStatGen Download
  156. LibStatGen Repository
  157. LibStatGen Troubleshooting
  158. LiftMap.py
  159. LiftOver
  160. LiftRsNumber.py
  161. Ligate Minimac
  162. Links to Sequence Analysis Tools
  163. LocusZoom
  164. LocusZoom Standalone
  165. M3VCF Files
  166. M3vcftools
  167. M3vcftools Usage
  168. MEAGA
  169. MERLIN format
  170. METAL
  171. METAL ADDFILTER
  172. METAL COLUMNCOUNTING
  173. METAL CUSTOMVARIABLE
  174. METAL Command Reference
  175. METAL Documentation
  176. METAL EFFECTLABEL
  177. METAL FAQ
  178. METAL GENOMICCONTROL
  179. METAL Glucose Example Script
  180. METAL LOGPVALUE
  181. METAL Quick Start
  182. METAL SOURCE
  183. METAL VERBOSE
  184. MaCH
  185. MaCH: 1000 Genomes Imputation Cookbook
  186. MaCH: Input Files
  187. MaCH: Pedigree with Integer Allele Codes
  188. MaCH: machX
  189. MaCH FAQ
  190. MaCH Options
  191. Mach2dat: Association with MACH output
  192. Mach DAC
  193. Main Page
  194. Make file tutorial
  195. Makefile.tool
  196. Mantra.cpp
  197. MappabilityScores
  198. Mapping Quality Scores
  199. Mary Kate Wing
  200. Merlin
  201. MetaMinimac
  202. Meta Analysis of SNPxEnvironment Interaction
  203. Minimac
  204. Minimac2
  205. Minimac3
  206. Minimac3 - Full List of Options
  207. Minimac3 ChangeLog
  208. Minimac3 Cookbook : Chromosome X Imputation
  209. Minimac3 Cookbook : Converting Files to VCF
  210. Minimac3 Cookbook : Pre-Phasing
  211. Minimac3 Examples
  212. Minimac3 Imputation Cookbook
  213. Minimac3 Info (Older Version)
  214. Minimac3 Info File
  215. Minimac3 Usage
  216. Minimac4
  217. Minimac4 - Full List of Options
  218. Minimac4 Documentation
  219. Minimac: 1000 Genomes Imputation Cookbook
  220. Minimac: Tutorial
  221. Minimac Command Reference
  222. Minimac Diagnostics
  223. Mount S3 Volume
  224. MutationFilter
  225. NHLBI Exome Sequencing Project
  226. NHLBI Informatics Resource
  227. New Fugue
  228. Outcomes For Mapping A Paired End
  229. Parameters.h
  230. PedScript
  231. PhoneHome
  232. Phred scale
  233. Pileup
  234. PileupBasedVariantCalling
  235. Polymutt
  236. Polymutt2
  237. Polymutt beta
  238. Power Calculations: Quantitative Traits
  239. QPLOT
  240. RAREFY
  241. RAREFY COMMAND
  242. RAREFY DOCUMENTATION
  243. RAREFY DOWNLOAD
  244. RAREFY FAQ
  245. RAREFY TUTORIAL
  246. RAREMETAL
  247. RAREMETALWORKER
  248. RAREMETALWORKER METHOD
  249. RAREMETALWORKER SPECIAL TOPICS
  250. RAREMETALWORKER X
  251. RAREMETALWORKER command reference
  252. RAREMETAL Change Log
  253. RAREMETAL Command Reference
  254. RAREMETAL DOWNLOAD & BUILD
  255. RAREMETAL Documentation
  256. RAREMETAL FAQ
  257. RAREMETAL METHOD
  258. Rare-metal-worker
  259. RareMETALS
  260. RareMETALS2
  261. RareMetals
  262. RareSimu
  263. Rare Variant Analysis and Meta-Analysis
  264. Rare variant tests
  265. Raremetal Incoming updates
  266. Read Mapping
  267. Regions of high linkage disequilibrium (LD)
  268. Relationship between Ploidy, Alleles and Genotypes
  269. RelativeFinder
  270. Releasing GotCloud
  271. RvTests
  272. Rvtests
  273. SAM
  274. SAM/BAM Classes FAQs
  275. SAM/BAM Convert Sequence
  276. SAM: Filtering Reads
  277. SAM Validation Criteria
  278. SAV Command Line Interface
  279. SAV File Format
  280. SEQMIX
  281. SNP Call Set Properties
  282. Sam Library Usage Examples
  283. Samtools-hybrid
  284. Sara Rashkin
  285. SardiNIA
  286. SardiNIA project meeting July 15-16, 2013
  287. SavR
  288. Savvy C++ Library
  289. Sayantan Das
  290. Scott Vrieze
  291. Screen Commands
  292. Sean Caron
  293. SeqShop: Aligning Your Own Genome, December 2014
  294. SeqShop: Aligning Your Own Genome, June 2014
  295. SeqShop: Aligning Your Own Genome, May 2015
  296. SeqShop: Analysis of Structural Variation Practical, December 2014
  297. SeqShop: Analysis of Structural Variation Practical, June 2014
  298. SeqShop: Analysis of Structural Variation Practical, May 2015
  299. SeqShop: Ancestry On Your Own Genome, December 2014
  300. SeqShop: Ancestry On Your Own Genome, June 2014
  301. SeqShop: Ancestry On Your Own Genome, May 2015
  302. SeqShop: Association Analysis, May 2015
  303. SeqShop: Calling Your Own Genome, December 2014
  304. SeqShop: Calling Your Own Genome, June 2014
  305. SeqShop: Calling Your Own Genome, May 2015
  306. SeqShop: December 2014
  307. SeqShop: Estimates of Genetic Ancestry Practical, December 2014
  308. SeqShop: Estimates of Genetic Ancestry Practical, June 2014
  309. SeqShop: Estimates of Genetic Ancestry Practical, May 2015
  310. SeqShop: Friday - Practicing what we learned, June 2014
  311. SeqShop: Genetic Association Analysis Practical, December 2014
  312. SeqShop: Genetic Association Analysis Practical, June 2014
  313. SeqShop: June 2014
  314. SeqShop: May 2015
  315. SeqShop: Sequence Mapping and Assembly Practical, December 2014
  316. SeqShop: Sequence Mapping and Assembly Practical, June 2014
  317. SeqShop: Sequence Mapping and Assembly Practical, May 2015
  318. SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014
  319. SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014
  320. SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015
  321. SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014
  322. SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014
  323. SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015
  324. Sequence Analysis Practice 2011/03/09
  325. Sequencing Workshop Analysis of Indels
  326. Short Workshops
  327. Shuang Feng
  328. Software
  329. SplitPed
  330. SplitRef
  331. StarCluster
  332. StatgenTools
  333. StatsTools
  334. Stouffer Method for Meta-Analysis
  335. StringMap.h
  336. Summary Statistics Files Specification for RAREMETAL and rvtests
  337. TOPMed Site Visit 2018
  338. TabAnno
  339. Tandem Repeat Concepts
  340. Test EPACTS for DIAGRAM
  341. Thunder
  342. ThunderVCF
  343. TinySimulator
  344. Tom Blackwell
  345. Tramp
  346. Trial Enrichment
  347. TrioCaller
  348. TrioCaller:Archive
  349. Triodenovo
  350. Tutorial: EMMAX GotCloud STOM
  351. Tutorial: EMMAX GotCloud STOM: Lecture 2
  352. Tutorial: EMMAX GotCloud STOM: Lecture 5
  353. Tutorial: EMMAX GotCloud STOM: Lecture 6
  354. Tutorial: EMMAX GotCloud STOM: Lecture 8
  355. Tutorial: GotCloud
  356. Tutorial: GotCloud UW CMG
  357. Tutorial: Low Pass Sequence Analysis
  358. Tutorial: Low Pass Sequence Analysis Answers
  359. Tutorial: RAREMETAL
  360. UMAKE
  361. UMAKE-glfSingle
  362. Understanding QPLOT output
  363. Understanding VerifyBamID output
  364. Understanding vcf-summary output
  365. Using Git Example
  366. Using Gotcloud on Flux
  367. Utility Library
  368. VCF
  369. VICES
  370. Variant Call Pipeline
  371. Variant Normalization
  372. Variant classification
  373. Vcf2geno
  374. VcfCodingSnps
  375. VcfCooker
  376. VcfGenomeStat
  377. VcfRefGen
  378. VerifyBamID
  379. VerifyIDintensity
  380. Verifying Sample Identities - Implementation
  381. Vmatch
  382. Vpeep
  383. Vt
  384. Xiaowei Zhan
  385. Zlib

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